IVF0007815 (gene) Melon (IVF77) v1

Overview
NameIVF0007815
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr09: 439895 .. 440068 (-)
RNA-Seq ExpressionIVF0007815
SyntenyIVF0007815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCGACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA

mRNA sequence

ATGCACAAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCGACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA

Coding sequence (CDS)

ATGCACAAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCGACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA

Protein sequence

MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSPTK
Homology
BLAST of IVF0007815 vs. ExPASy TrEMBL
Match: A0A5A7TBZ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00370 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.8e-09
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1  MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS 54
          MHKNV  SGKD+GK I ++E  + K VGRN LG+ FP  HQQ IGNNLL T S
Sbjct: 1  MHKNVSESGKDIGKGIPNVESYIIKVVGRNVLGERFPMPHQQGIGNNLLPTSS 53

BLAST of IVF0007815 vs. ExPASy TrEMBL
Match: A0A5A7T7S7 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2967G00080 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 1   MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSP 56
           MHK VD SGKDVG  I D E +V  T+ RN   D FPT HQQ + N  L T S P
Sbjct: 172 MHKYVDESGKDVGNQILDAERDVRTTIERNTSRDRFPTCHQQGVENTFLPTSSLP 226

BLAST of IVF0007815 vs. NCBI nr
Match: KAA0039107.1 (hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa] >TYK25976.1 hypothetical protein E5676_scaffold1441G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 5.51e-13
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 1  MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS 53
          MHKNV  SGKD+GK I ++E  + K VGRN LG+ FP  HQQ IGNNLL T S
Sbjct: 1  MHKNVSESGKDIGKGIPNVESYIIKVVGRNVLGERFPMPHQQGIGNNLLPTSS 53

BLAST of IVF0007815 vs. NCBI nr
Match: KAA0038928.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.19e-07
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 1   MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSP 55
           MHK VD SGKDVG  I D E +V  T+ RN   D FPT HQQ + N  L T S P
Sbjct: 172 MHKYVDESGKDVGNQILDAERDVRTTIERNTSRDRFPTCHQQGVENTFLPTSSLP 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBZ35.8e-0962.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T7S71.8e-0554.55Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
KAA0039107.15.51e-1362.26hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa] >TYK2597... [more]
KAA0038928.12.19e-0754.55retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0007815.1IVF0007815.1mRNA