IVF0007324 (gene) Melon (IVF77) v1

Overview


Name	IVF0007324
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr05: 7538116 .. 7538289 (-)
RNA-Seq Expression	IVF0007324
Synteny	IVF0007324

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACAGAGGGCGGCTGGGTGTCGGCAGACACGGTCGAACGAAGGACGCACGACGGCGACTGGGATGAAGGAGATGAAGGCGGAGGTAGGGTGGTCGGCAGTCGACTGGTTGCGTGAGACTGAGAGGAAGATCGAAAATGGGGCGACCGCGACGGTTGTTCGTTGGCGTTGA

mRNA sequence

ATGCGACAGAGGGCGGCTGGGTGTCGGCAGACACGGTCGAACGAAGGACGCACGACGGCGACTGGGATGAAGGAGATGAAGGCGGAGGTAGGGTGGTCGGCAGTCGACTGGTTGCGTGAGACTGAGAGGAAGATCGAAAATGGGGCGACCGCGACGGTTGTTCGTTGGCGTTGA

Coding sequence (CDS)

ATGCGACAGAGGGCGGCTGGGTGTCGGCAGACACGGTCGAACGAAGGACGCACGACGGCGACTGGGATGAAGGAGATGAAGGCGGAGGTAGGGTGGTCGGCAGTCGACTGGTTGCGTGAGACTGAGAGGAAGATCGAAAATGGGGCGACCGCGACGGTTGTTCGTTGGCGTTGA

Protein sequence

MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR

Homology

[Close]

BLAST of IVF0007324 vs. ExPASy TrEMBL
Match: A0A5A7SQR1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00560 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR 58
           MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR
Sbjct: 748 MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR 804

[Close]

BLAST of IVF0007324 vs. ExPASy TrEMBL
Match: A0A5D3C4M4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00440 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVR 56
           MR RAAG +QTRSNEGR T TGMKEMK EVGWSAVDWL ETER+ ENGA AT VR
Sbjct: 76  MRWRAAGHQQTRSNEGRMTVTGMKEMKVEVGWSAVDWLHETERRTENGAAATAVR 130

[Close]

BLAST of IVF0007324 vs. ExPASy TrEMBL
Match: A0A5A7UWN8 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1661G00090 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1   MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVD 37
           MR+RAA  RQTRS+E RT ATGMKEMKAEVGWSAVD
Sbjct: 126 MRRRAARRRQTRSDEERTVATGMKEMKAEVGWSAVD 161

[Close]

BLAST of IVF0007324 vs. NCBI nr
Match: KAA0033260.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 8.28e-29
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR 57
           MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR
Sbjct: 748 MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR 804

[Close]

BLAST of IVF0007324 vs. NCBI nr
Match: KAA0061216.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK06264.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 6.27e-21
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVR 55
           MR RAAG +QTRSNEGR T TGMKEMK EVGWSAVDWL ETER+ ENGA AT VR
Sbjct: 76  MRWRAAGHQQTRSNEGRMTVTGMKEMKVEVGWSAVDWLHETERRTENGAAATAVR 130

[Close]

BLAST of IVF0007324 vs. NCBI nr
Match: KAA0060262.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYJ95993.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.36e-08
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1   MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVD 36
           MR+RAA  RQTRS+E RT ATGMKEMKAEVGWSAVD
Sbjct: 126 MRRRAARRRQTRSDEERTVATGMKEMKAEVGWSAVD 161

The following BLAST results are available for this feature:

BLAST of IVF0007324 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007324 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQR1	4.1e-23	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0056...	[more]
A0A5D3C4M4	1.6e-14	80.00	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UWN8	2.3e-05	83.33	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0007324 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033260.1	8.28e-29	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061216.1	6.27e-21	80.00	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK06264.1 NBS-LRR t...	[more]
KAA0060262.1	1.36e-08	83.33	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYJ95993.1 NBS-LRR t...	[more]

BLAST of IVF0007324 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007324.1	IVF0007324.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding