Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAGACTGAAAAAGAACCCGAAGCCATGGACGGATGAGCATACTCGAGCAGTCCAATCAATCAAATCTTTGGCCAAAAGCGTCACATGCTTATCTCTTGTAGATGAACAGGCCAAACTCATTATTGATATAGATGCATCCGATATTGGTTACGGAGGCATTCTCATACAAGAGCTTGACGGAAAAATCTCCATTGTCCGTTATCATTCGGGAATATGGAATAGTGCACAAAAAAACTATTCCACAGTCAAAAAGGAAGTTTTAGCAATAGTACTCTCCGTTCAAAAATTTCAAGGAGATCTCATCAACAAAGATTTCCTTGTTCGTACTGATTCAAAAGCAAGCAAATTCATCTTTGAAAAAGATGTCAAGAATCTTATCTCAAAGCAAATCTTTGCAAGATGGCAAGCAATCTTATCTTGCTTTGATTTCAAAATTGAGCCTATAAAAGACAGTGAGAATTCACTTGCTGATTACTTCTCAAGAGAACATCTCTTGAAGACTACTTCTCCAACCTTGAATTCTCCTTCAGATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTTCTTCCTCAAGGTCTTCAATTCCAAGGAATCCTTCCTCTTATTCTCAAATTGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG
mRNA sequence
GACAGACTGAAAAAGAACCCGAAGCCATGGACGGATGAGCATACTCGAGCAGTCCAATCAATCAAATCTTTGGCCAAAAGCGTCACATGCTTATCTCTTGTAGATGAACAGGCCAAACTCATTATTGATATAGATGCATCCGATATTGGTTACGGAGGCATTCTCATACAAGAGCTTGACGGAAAAATCTCCATTGTCCGTTATCATTCGGGAATATGGAATAGTGCACAAAAAAACTATTCCACAGTCAAAAAGGAAGTTTTAGCAATAGTACTCTCCGTTCAAAAATTTCAAGGAGATCTCATCAACAAAGATTTCCTTGTTCGTACTGATTCAAAAGCAAGCAAATTCATCTTTGAAAAAGATGTCAAGAATCTTATCTCAAAGCAAATCTTTGCAAGATGGCAAGCAATCTTATCTTGCTTTGATTTCAAAATTGAGCCTATAAAAGACAGTGAGAATTCACTTGCTGATTACTTCTCAAGAGAACATCTCTTGAAGACTACTTCTCCAACCTTGAATTCTCCTTCAGATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTTCTTCCTCAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG
Coding sequence (CDS)
ATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTTCTTCCTCAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG
Protein sequence
MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVAPRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY
Homology
BLAST of IVF0007100 vs. ExPASy TrEMBL
Match:
A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)
HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 190/233 (81.55%), Postives = 194/233 (83.26%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP GRQ P NQRQSPQSNQNNSPQRPPQTI SSS T PS+GKPSTQSSAPS MSAENY
Sbjct: 1 MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRR QG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK A
Sbjct: 61 AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P+VFQPRP INGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE
Sbjct: 121 SAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
NFLP+DL T TFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. ExPASy TrEMBL
Match:
A0A5A7U7T9 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE=4 SV=1)
HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 189/233 (81.12%), Postives = 195/233 (83.69%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP GRQR PNQRQSPQSNQNNSPQR PQT+ASSS T PSRGKPS QSSA SPMSAENY
Sbjct: 1 MEPPPGRQRSPNQRQSPQSNQNNSPQR-PQTVASSSETTPSRGKPSAQSSAHSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK VA
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSR 120
Query: 121 ----------PRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
+ + +VFQPRPPINGYFTKTTMVDLTIEPEFDGP VHEVCNQIFPHE
Sbjct: 121 SAISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSK RIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSY 232
BLAST of IVF0007100 vs. ExPASy TrEMBL
Match:
A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)
HSP 1 Score: 332.4 bits (851), Expect = 1.4e-87
Identity = 179/233 (76.82%), Postives = 193/233 (82.83%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP RQRPPN+RQ P +NQNNS +PPQ++ASSSGT PSR + +QSSAPSPMSAENY
Sbjct: 1 MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPSTALL PSGPTTPNK A
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. ExPASy TrEMBL
Match:
A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)
HSP 1 Score: 330.5 bits (846), Expect = 5.3e-87
Identity = 178/233 (76.39%), Postives = 192/233 (82.40%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP RQRPPN+RQ P +NQNNS +PPQ++ASSSGT PSR + +QSSAPSPMSAENY
Sbjct: 1 MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPST LL PSGPTTPNK A
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. ExPASy TrEMBL
Match:
A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)
HSP 1 Score: 327.8 bits (839), Expect = 3.4e-86
Identity = 178/233 (76.39%), Postives = 190/233 (81.55%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP GRQRP NQRQ Q++QN++PQRPPQ++A+SSGT PSR K QSSAPSPMSAENY
Sbjct: 1 MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIP TALL PSGPT PNK A
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVCNQIFPH
Sbjct: 121 SAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHGF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
NFLP+DL+ TRTFYEYILVDS SA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. NCBI nr
Match:
KAA0050447.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 342 bits (878), Expect = 7.90e-115
Identity = 189/233 (81.12%), Postives = 195/233 (83.69%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP GRQR PNQRQSPQSNQNNSPQRP QT+ASSS T PSRGKPS QSSA SPMSAENY
Sbjct: 1 MEPPPGRQRSPNQRQSPQSNQNNSPQRP-QTVASSSETTPSRGKPSAQSSAHSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVAP------- 120
AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK VA
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSR 120
Query: 121 -----------RPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
+ + +VFQPRPPINGYFTKTTMVDLTIEPEFDGP VHEVCNQIFPHE
Sbjct: 121 SAISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSK RIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSY 232
BLAST of IVF0007100 vs. NCBI nr
Match:
KAA0050443.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 345 bits (886), Expect = 9.62e-115
Identity = 190/233 (81.55%), Postives = 194/233 (83.26%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP GRQ P NQRQSPQSNQNNSPQRPPQTI SSS T PS+GKPSTQSSAPS MSAENY
Sbjct: 1 MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRR QG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK A
Sbjct: 61 AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P+VFQPRP INGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE
Sbjct: 121 SAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
NFLP+DL T TFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. NCBI nr
Match:
KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 329 bits (844), Expect = 2.16e-108
Identity = 179/233 (76.82%), Postives = 193/233 (82.83%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP RQRPPN+RQ P +NQNNS +PPQ++ASSSGT PSR + +QSSAPSPMSAENY
Sbjct: 1 MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPSTALL PSGPTTPNK A
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. NCBI nr
Match:
TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 327 bits (839), Expect = 1.23e-107
Identity = 178/233 (76.39%), Postives = 192/233 (82.40%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP RQRPPN+RQ P +NQNNS +PPQ++ASSSGT PSR + +QSSAPSPMSAENY
Sbjct: 1 MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPST LL PSGPTTPNK A
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233
BLAST of IVF0007100 vs. NCBI nr
Match:
TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 325 bits (832), Expect = 1.41e-106
Identity = 178/233 (76.39%), Postives = 190/233 (81.55%), Query Frame = 0
Query: 1 MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
MEPP GRQRP NQRQ Q++QN++PQRPPQ++A+SSGT PSR K QSSAPSPMSAENY
Sbjct: 1 MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60
Query: 61 AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIP TALL PSGPT PNK A
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSSR 120
Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
PR + P +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVCNQIFPH
Sbjct: 121 SAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHGF 180
Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
NFLP+DL+ TRTFYEYILVDS SA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSY 233
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U3G5 | 1.9e-92 | 81.55 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE... | [more] |
A0A5A7U7T9 | 1.6e-91 | 81.12 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE... | [more] |
A0A5A7SQU5 | 1.4e-87 | 76.82 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5D3DX32 | 5.3e-87 | 76.39 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5D3D2Q6 | 3.4e-86 | 76.39 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
Match Name | E-value | Identity | Description | |
KAA0050447.1 | 7.90e-115 | 81.12 | polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0050443.1 | 9.62e-115 | 81.55 | polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0032918.1 | 2.16e-108 | 76.82 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
TYK28082.1 | 1.23e-107 | 76.39 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
TYK17808.1 | 1.41e-106 | 76.39 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |