IVF0007100 (gene) Melon (IVF77) v1

Overview


Name	IVF0007100
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr04: 17165097 .. 17166329 (-)
RNA-Seq Expression	IVF0007100
Synteny	IVF0007100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAGACTGAAAAAGAACCCGAAGCCATGGACGGATGAGCATACTCGAGCAGTCCAATCAATCAAATCTTTGGCCAAAAGCGTCACATGCTTATCTCTTGTAGATGAACAGGCCAAACTCATTATTGATATAGATGCATCCGATATTGGTTACGGAGGCATTCTCATACAAGAGCTTGACGGAAAAATCTCCATTGTCCGTTATCATTCGGGAATATGGAATAGTGCACAAAAAAACTATTCCACAGTCAAAAAGGAAGTTTTAGCAATAGTACTCTCCGTTCAAAAATTTCAAGGAGATCTCATCAACAAAGATTTCCTTGTTCGTACTGATTCAAAAGCAAGCAAATTCATCTTTGAAAAAGATGTCAAGAATCTTATCTCAAAGCAAATCTTTGCAAGATGGCAAGCAATCTTATCTTGCTTTGATTTCAAAATTGAGCCTATAAAAGACAGTGAGAATTCACTTGCTGATTACTTCTCAAGAGAACATCTCTTGAAGACTACTTCTCCAACCTTGAATTCTCCTTCAGATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTTCTTCCTCAAGGTCTTCAATTCCAAGGAATCCTTCCTCTTATTCTCAAATTGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG

mRNA sequence

GACAGACTGAAAAAGAACCCGAAGCCATGGACGGATGAGCATACTCGAGCAGTCCAATCAATCAAATCTTTGGCCAAAAGCGTCACATGCTTATCTCTTGTAGATGAACAGGCCAAACTCATTATTGATATAGATGCATCCGATATTGGTTACGGAGGCATTCTCATACAAGAGCTTGACGGAAAAATCTCCATTGTCCGTTATCATTCGGGAATATGGAATAGTGCACAAAAAAACTATTCCACAGTCAAAAAGGAAGTTTTAGCAATAGTACTCTCCGTTCAAAAATTTCAAGGAGATCTCATCAACAAAGATTTCCTTGTTCGTACTGATTCAAAAGCAAGCAAATTCATCTTTGAAAAAGATGTCAAGAATCTTATCTCAAAGCAAATCTTTGCAAGATGGCAAGCAATCTTATCTTGCTTTGATTTCAAAATTGAGCCTATAAAAGACAGTGAGAATTCACTTGCTGATTACTTCTCAAGAGAACATCTCTTGAAGACTACTTCTCCAACCTTGAATTCTCCTTCAGATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTTCTTCCTCAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG

Coding sequence (CDS)

ATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTCCCCGACCGCTTCTTCCTCAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG

Protein sequence

MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVAPRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY

Homology

[Close]

BLAST of IVF0007100 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 190/233 (81.55%), Postives = 194/233 (83.26%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP GRQ P NQRQSPQSNQNNSPQRPPQTI SSS T PS+GKPSTQSSAPS MSAENY
Sbjct: 1   MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRR QG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK  A        
Sbjct: 61  AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P+VFQPRP INGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE 
Sbjct: 121 SAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
           NFLP+DL  T TFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. ExPASy TrEMBL
Match: A0A5A7U7T9 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 189/233 (81.12%), Postives = 195/233 (83.69%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP GRQR PNQRQSPQSNQNNSPQR PQT+ASSS T PSRGKPS QSSA SPMSAENY
Sbjct: 1   MEPPPGRQRSPNQRQSPQSNQNNSPQR-PQTVASSSETTPSRGKPSAQSSAHSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK VA        
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSR 120

Query: 121 ----------PRPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
                      + +  +VFQPRPPINGYFTKTTMVDLTIEPEFDGP VHEVCNQIFPHE 
Sbjct: 121 SAISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
           NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSK RIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSY 232

[Close]

BLAST of IVF0007100 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.4e-87
Identity = 179/233 (76.82%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPSTALL PSGPTTPNK  A        
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
           NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. ExPASy TrEMBL
Match: A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.3e-87
Identity = 178/233 (76.39%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPST LL PSGPTTPNK  A        
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
           NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.4e-86
Identity = 178/233 (76.39%), Postives = 190/233 (81.55%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP GRQRP NQRQ  Q++QN++PQRPPQ++A+SSGT PSR K   QSSAPSPMSAENY
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIP TALL PSGPT PNK  A        
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVCNQIFPH  
Sbjct: 121 SAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHGF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 216
           NFLP+DL+ TRTFYEYILVDS SA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. NCBI nr
Match: KAA0050447.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (878), Expect = 7.90e-115
Identity = 189/233 (81.12%), Postives = 195/233 (83.69%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP GRQR PNQRQSPQSNQNNSPQRP QT+ASSS T PSRGKPS QSSA SPMSAENY
Sbjct: 1   MEPPPGRQRSPNQRQSPQSNQNNSPQRP-QTVASSSETTPSRGKPSAQSSAHSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVAP------- 120
           AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK VA        
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSR 120

Query: 121 -----------RPLLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
                      + +  +VFQPRPPINGYFTKTTMVDLTIEPEFDGP VHEVCNQIFPHE 
Sbjct: 121 SAISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
           NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSK RIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSY 232

[Close]

BLAST of IVF0007100 vs. NCBI nr
Match: KAA0050443.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 345 bits (886), Expect = 9.62e-115
Identity = 190/233 (81.55%), Postives = 194/233 (83.26%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP GRQ P NQRQSPQSNQNNSPQRPPQTI SSS T PS+GKPSTQSSAPS MSAENY
Sbjct: 1   MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRR QG AQRTLTIQSDSSSLPPIPSTALL PSGPTTPNK  A        
Sbjct: 61  AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P+VFQPRP INGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE 
Sbjct: 121 SAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
           NFLP+DL  T TFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. NCBI nr
Match: KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 329 bits (844), Expect = 2.16e-108
Identity = 179/233 (76.82%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPSTALL PSGPTTPNK  A        
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
           NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (839), Expect = 1.23e-107
Identity = 178/233 (76.39%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP  RQRPPN+RQ P +NQNNS  +PPQ++ASSSGT PSR +  +QSSAPSPMSAENY
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG A+RTLTIQSDSSSLPPIPST LL PSGPTTPNK  A        
Sbjct: 61  AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P++FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC+QIFPH  
Sbjct: 121 SAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
           NFLP+DL+ TRTFYEYILVDS SAEITHVPDKNDPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSY 233

[Close]

BLAST of IVF0007100 vs. NCBI nr
Match: TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (832), Expect = 1.41e-106
Identity = 178/233 (76.39%), Postives = 190/233 (81.55%), Query Frame = 0


Query: 1   MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENY 60
           MEPP GRQRP NQRQ  Q++QN++PQRPPQ++A+SSGT PSR K   QSSAPSPMSAENY
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61  AMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVA-------- 120
           AMDLQFEQVSRRRQG AQRTLTIQSDSSSLPPIP TALL PSGPT PNK  A        
Sbjct: 61  AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSSR 120

Query: 121 ---PRP-------LLPQVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHEL 180
              PR        + P +FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVCNQIFPH  
Sbjct: 121 SAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHGF 180

Query: 181 NFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY 215
           NFLP+DL+ TRTFYEYILVDS SA+ITHVPDK DPSKIIYSKLRIFRVLT SY
Sbjct: 181 NFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSY 233

The following BLAST results are available for this feature:

BLAST of IVF0007100 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3G5	1.9e-92	81.55	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]
A0A5A7U7T9	1.6e-91	81.12	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE...	[more]
A0A5A7SQU5	1.4e-87	76.82	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DX32	5.3e-87	76.39	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3D2Q6	3.4e-86	76.39	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0007100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050447.1	7.90e-115	81.12	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050443.1	9.62e-115	81.55	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032918.1	2.16e-108	76.82	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28082.1	1.23e-107	76.39	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK17808.1	1.41e-106	76.39	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007100 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007100.1	IVF0007100.1	mRNA