IVF0006906 (gene) Melon (IVF77) v1

Overview
NameIVF0006906
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr06: 22687116 .. 22687397 (+)
RNA-Seq ExpressionIVF0006906
SyntenyIVF0006906
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAGAAGAAAAAGAAACTATGAAAAATGCGGCCTATGATGCCAAAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGCCATTGGTGAAGAAATAACTTATGGAATGTGAAAGAAATTGGAAGAACTTTATCAGTCTACAGACTTACCTAACCGTGCATACGTGAGGGAGAGGTTATTTACCTTCAAGATGGATGGCAACAAATCTTTGACAGAGAATCTTGAAGAATTCAAGAAGTTGTCTTCAGATTTCAGAGAATGGGAGACAAATTGGTGA

mRNA sequence

ATGACTCAAGAAGAAAAAGAAACTATGAAAAATGCGGCCTATGATGCCAAAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGCCATTGAACTTTATCAGTCTACAGACTTACCTAACCGTGCATACGTGAGGGAGAGGTTATTTACCTTCAAGATGGATGGCAACAAATCTTTGACAGAGAATCTTGAAGAATTCAAGAAGTTGTCTTCAGATTTCAGAGAATGGGAGACAAATTGGTGA

Coding sequence (CDS)

ATGACTCAAGAAGAAAAAGAAACTATGAAAAATGCGGCCTATGATGCCAAAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGCCATTGAACTTTATCAGTCTACAGACTTACCTAACCGTGCATACGTGAGGGAGAGGTTATTTACCTTCAAGATGGATGGCAACAAATCTTTGACAGAGAATCTTGAAGAATTCAAGAAGTTGTCTTCAGATTTCAGAGAATGGGAGACAAATTGGTGA

Protein sequence

MTQEEKETMKNAAYDAKVLNLSDNVLREAIELYQSTDLPNRAYVRERLFTFKMDGNKSLTENLEEFKKLSSDFREWETNW
Homology
BLAST of IVF0006906 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-23
Identity = 66/88 (75.00%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MTQEEKETMKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRER 60
          MT EEKETM+NA Y A VLNLSDNVLRE I             ELYQS DLPNRAYVRER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 LFTFKMDGNKSLTENLEEFKKLSSDFRE 76
           FTFKMDGNKSLTENL EFKKLSSDFRE
Sbjct: 61 FFTFKMDGNKSLTENLGEFKKLSSDFRE 88

BLAST of IVF0006906 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-20
Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1  MTQEEKETMKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRER 60
          MTQEEKETM+N AY A VLNLSDNVL+E I             ELYQS DLPNRAY+RER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 LFTFKMDGNKSLTENLEEFKKLSSDFRE 76
            T+KMD NKSL ENL EFKKLS DFRE
Sbjct: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRE 88

BLAST of IVF0006906 vs. ExPASy TrEMBL
Match: A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 58/87 (66.67%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MTQEEKETMKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRER 60
          MTQE+KETM+ AAY A VLNLSDNV+RE I             ELYQS DL N AYVRER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 LFTFKMDGNKSLTENLEEFKKLSSDFR 75
           FTFKMD N SL ENL EFKKLSSDF+
Sbjct: 61 FFTFKMDDNNSLIENLGEFKKLSSDFK 87

BLAST of IVF0006906 vs. ExPASy TrEMBL
Match: A0A5D3DXZ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00130 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-16
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 9  MKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRERLFTFKMDG 68
          M+NA Y A VLNLSDNVLRE I             ELYQ  DLPNRA+VRER FTFKMD 
Sbjct: 1  MENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDD 60

Query: 69 NKSLTENLEEFKKLSSDFRE 76
          NK + ENLEEFKKLSS+F+E
Sbjct: 61 NKLVIENLEEFKKLSSEFKE 80

BLAST of IVF0006906 vs. ExPASy TrEMBL
Match: A0A5D3CAI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00330 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.9e-12
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 31 ELYQSTDLPNRAYVRERLFTFKMDGNKSLTENLEEFKKLSSDFRE 76
          ELYQS DLPNRAYVRER FTFKMD NKSL ENL EFKKLSSDF+E
Sbjct: 7  ELYQSKDLPNRAYVRERFFTFKMDDNKSLIENLGEFKKLSSDFKE 51

BLAST of IVF0006906 vs. NCBI nr
Match: KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 2.17e-32
Identity = 66/88 (75.00%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MTQEEKETMKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRER 60
          MT EEKETM+NA Y A VLNLSDNVLRE I             ELYQS DLPNRAYVRER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 LFTFKMDGNKSLTENLEEFKKLSSDFRE 75
           FTFKMDGNKSLTENL EFKKLSSDFRE
Sbjct: 61 FFTFKMDGNKSLTENLGEFKKLSSDFRE 88

BLAST of IVF0006906 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 1.17e-28
Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1  MTQEEKETMKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRER 60
          MTQEEKETM+N AY A VLNLSDNVL+E I             ELYQS DLPNRAY+RER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 LFTFKMDGNKSLTENLEEFKKLSSDFRE 75
            T+KMD NKSL ENL EFKKLS DFRE
Sbjct: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRE 88

BLAST of IVF0006906 vs. NCBI nr
Match: KAA0059755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99769.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 1.16e-26
Identity = 58/87 (66.67%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MTQEEKETMKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRER 60
          MTQE+KETM+ AAY A VLNLSDNV+RE I             ELYQS DL N AYVRER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 LFTFKMDGNKSLTENLEEFKKLSSDFR 74
           FTFKMD N SL ENL EFKKLSSDF+
Sbjct: 61 FFTFKMDDNNSLIENLGEFKKLSSDFK 87

BLAST of IVF0006906 vs. NCBI nr
Match: TYK28110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.49e-23
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 9  MKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRERLFTFKMDG 68
          M+NA Y A VLNLSDNVLRE I             ELYQ  DLPNRA+VRER FTFKMD 
Sbjct: 1  MENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDD 60

Query: 69 NKSLTENLEEFKKLSSDFRE 75
          NK + ENLEEFKKLSS+F+E
Sbjct: 61 NKLVIENLEEFKKLSSEFKE 80

BLAST of IVF0006906 vs. NCBI nr
Match: KAA0049584.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15944.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.47e-18
Identity = 47/79 (59.49%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 9  MKNAAYDAKVLNLSDNVLREAI-------------ELYQSTDLPNRAYVRERLFTFKMDG 68
          M+NA Y A VLNLSD+VLRE I             ELY+S DL NRAY RER FTFKMD 
Sbjct: 1  MENAGYGAIVLNLSDSVLREFIGEERAYEMWKKLEELYKSKDLLNRAYGRERFFTFKMDD 60

Query: 69 NKSLTENLEEFKKLSSDFR 74
          NK LT +L EFK+LSS+F+
Sbjct: 61 NKYLTGDLGEFKQLSSNFK 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V6Z91.5e-2375.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BAU22.7e-2068.18Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7V1L81.5e-1866.67Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DXZ12.4e-1665.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CAI47.9e-1286.67Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
KAA0063883.12.17e-3275.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYJ96960.11.17e-2868.18Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0059755.11.16e-2666.67Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK28110.12.49e-2365.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0049584.19.47e-1859.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006906.2IVF0006906.2mRNA