IVF0006841 (gene) Melon (IVF77) v1

Overview


Name	IVF0006841
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LYR motif-containing protein 2
Location	chr04: 3376063 .. 3377028 (+)
RNA-Seq Expression	IVF0006841
Synteny	IVF0006841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCATTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTCATCATTAAGGTAATTTCCTACATTCTCGAAGAAATTTACATTGTGCCCTAGTTTTTTTTTTTTTTTTTAATTAGTTCATACAACTCTTCAAAGAATTATTTCGATAATAAATCCTAATCTGCCTATGATTTCTGCACTGAACTGTTTGAATTTGTGATTATGAATGATTGGTTTTGGCATAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAATAGCTCGGAAAGCACCTGTTGATGGTCGAGGTAAAGCTTTGTTTAATGGGATTTTATAATGACTTTGTGTTGTGATTGTGGAAATTTCATGAATTGGATTTGATGATAAGAGTGTTTTGGAACAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAACTAGAGATCTTTCTTTTCTTTCTTTTTTATTAATTTTGATTATTGGGAGTTAAGTTTTTCTCCAATCATTTTGGAGTGTCTCATAGAAAGGAATGTTGTTTTAGGGGAAGGATATGAGTTTGGTTTAGGGCTTATCTTCAAGTTATTGTAATCAAATTGTGATTAAGGTACAAAGGAGTTATTAATTCCACTTCCCACATTATTTGTATCAGTTTGATTTTTATGTTAGGTTTTGAAATAAGAAACTGAAATCATCTAAAATTGAGATGAATATGTGGGATTATTGACTGAGA

mRNA sequence

CAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCATTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTCATCATTAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAATAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAACTAGAGATCTTTCTTTTCTTTCTTTTTTATTAATTTTGATTATTGGGAGTTAAGTTTTTCTCCAATCATTTTGGAGTGTCTCATAGAAAGGAATGTTGTTTTAGGGGAAGGATATGAGTTTGGTTTAGGGCTTATCTTCAAGTTATTGTAATCAAATTGTGATTAAGGTACAAAGGAGTTATTAATTCCACTTCCCACATTATTTGTATCAGTTTGATTTTTATGTTAGGTTTTGAAATAAGAAACTGAAATCATCTAAAATTGAGATGAATATGTGGGATTATTGACTGAGA

Coding sequence (CDS)

ATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAATAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAA

Protein sequence

MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH

Homology

[Close]

BLAST of IVF0006841 vs. ExPASy TrEMBL
Match: A0A1S3CRB8 (LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLKQLDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. ExPASy TrEMBL
Match: A0A5D3E7B8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007760 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLKQLDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. ExPASy TrEMBL
Match: A0A5A7V7X8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001390 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLKQLDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LR  RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. ExPASy TrEMBL
Match: A0A0A0LGK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G874410 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.3e-25
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 68

[Close]

BLAST of IVF0006841 vs. NCBI nr
Match: XP_008466455.1 (PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >TYK31461.1 LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 4.49e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 81
          LLSEGIERLKQLDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. NCBI nr
Match: KAA0063314.1 (LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 2.60e-47
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 81
          LLSEGIERLKQLDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. NCBI nr
Match: XP_004136367.1 (LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-containing protein 2 [Cucumis sativus] >KAE8651352.1 hypothetical protein Csa_000719 [Cucumis sativus])

HSP 1 Score: 153 bits (387), Expect = 1.06e-46
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 81
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122 bits (307), Expect = 1.75e-34
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LR  RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 81
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 122 bits (305), Expect = 3.54e-34
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LR  RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 81
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of IVF0006841 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 110.2 bits (274), Expect = 8.1e-25
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 6  DLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 65
          DL+ FILRARVLKLYRQ L+IA +APV  R EL+  +R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5  DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 66 IERLKQLDEMLDMQGH 82
          +ER+K LDEMLDMQGH
Sbjct: 65 LERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:

BLAST of IVF0006841 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRB8	1.4e-35	100.00	LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1	[more]
A0A5D3E7B8	1.4e-35	100.00	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7V7X8	5.1e-35	98.77	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1F8N3	4.8e-25	77.78	uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A0A0LGK2	6.3e-25	82.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G874410 PE=4 SV=1	[more]

BLAST of IVF0006841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466455.1	4.49e-48	100.00	PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICT...	[more]
KAA0063314.1	2.60e-47	98.77	LYR motif-containing protein 2 [Cucumis melo var. makuwa]	[more]
XP_004136367.1	1.06e-46	97.53	LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-conta...	[more]
XP_023535371.1	1.75e-34	77.78	uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372....	[more]
XP_022936861.1	3.54e-34	77.78	uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar...	[more]

BLAST of IVF0006841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76065.1	8.1e-25	72.37	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..71 e-value: 2.9E-15 score: 56.1
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006841.3	IVF0006841.3	mRNA