IVF0006817 (gene) Melon (IVF77) v1

Overview


Name	IVF0006817
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Peptide chain release factor 1
Location	chr09: 1044157 .. 1046966 (-)
RNA-Seq Expression	IVF0006817
Synteny	IVF0006817

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCCAACCTCAATCGGTCTACGTTGTTATGTTTATAAATATTTTGAGCCAAAAACAATTTTTTTAAATAAATATGCGACATAAAGTAAGCGATTTCCCAAATCGTTTTGTGAAGTGAGAAAATGGCAAACGCAAATATGCTCTGGAATTCCGCTAAGATTCTTGGATTTCCTGCTCCGATAGCAAGCAACGTCCGATGGGCAAGGTTCGGTTATAAGTTTCGGTTTCGGCATCATCCATTCGAGGGCTCTTTCTTCTTCTTCAACTCCTTGCGTTTCAATTGCAGCTCCAGTAATGCAAATTCAGTATGTAGTGGCAAAGAGTACTTAGTTTTGTCCGACGAAGAGCTGATGAAACAGTGCGAAATGGGCACGTTCAAGGCGTCAGGTCCCGGCGGTCAGCACCGCAACAAGCGCGAGTCTGCTGTTCGTTTGAAGCACATTCCCACTGGTATCATTGCTCAGGTTCATATTTGTTTCATACTTACAATCAATTTCATTGATATACTTCTGTTTCTTTTGCTCTGAAGTTAAATTCTTTGGCCCTTTATTGCCAAGGCTGTTGAGGATCGATCCCAGCATAAGAATCGATCCAGTGCCTTAGCTCGTCTACGTGCTCTCTTGGCCCTAAAAGGTGCGGTGGTTTATTTATTAGATGTTTGTTTTTTTATATCTCATTTCTCATTTCATGTGTTGCTGTATTGAATTCAGTTAGGAACCCTGTGGATCTTGAAGATTATTCGCCTCCTCCAGAGCTTCTTCAAATTCTTCCTCCTAAGTCCACTGTTAGGCCACCGGAATGTGGCCCTCAAATTGGTCCTAACAATTCTAAGTTTCTGCCGGTATCTCACTTTTCTAGTTCTTTCTATATGTCTATGTGTGCATATGAGTGTGCGTTTATGATTTGATTTTCTTGATGATATATAAAATTCTTTTTTGAAATGGAAACAAGATTTATTGAAATAATGAATGAGTCTAATGCTCAAACTACATGAGATGAAACAAAAATAAAAATAAAAACTGCAAATTTGCCAAAACAAGGCAAGAATCATAATATAAAACATAGACTAAACTTCTGATGAAGCACCAAAAACATTCGAGTTTAAACAAATAACTTGAGTTGAATAATCAGCAAAGTGTTTAAATAGAATATATATTTATACACACACACACACGAGACGATTATGAATGATAGCTGAATTGCTTAATTTTCAGGGCATGCAAGCTCTACTGGATCTAATTTCCACACTAGATGGTTCTGTATCAGACACAGCTAAGCTTTTAGGGTATGTATGCTATTCATGTGTTATCCTTTGTTTCTTTTTACTTTGTTTCCAACATGACATAGCATTCACAGTTAAATGTAGAGAATGGGAGTGTTTCAATTATGTGAGAAGATTGGGCTTTTATCAAGAAATTGAAACTACTGATGTGTGGATGTTATGATGGTTGATGTGGAGATTAGTGGAAGGGGTATCATTGGTAGGTTTATGGTTTTTGTGGAATGAAGAAGAATGAAGTGACTAATGAGTTTGGACCTCTGGAAGATGTTGGAGGATAATTTTCTCAGGAAATGTCTAGTTGAAGGCAGAAGCCTTGCCTTGTGTGTCTTGAAGAAGGCTTCTTTCATGGGATCACTATGAGTAGGAGGAAGGAGCTTTTACATTTCTTTTATTACTTTTGACGATGGTATCACTTTCATTAATTAAAAGAGTGGACTTAAGAATTTGATTGGCCACTGACTAAGGACGCAGACCAAATTTGGTTAGAGAGAGCTTCTTAGTTTGATGACTAGCTCAGTCGAAGGACATTCCTTTCGAGCTCCATTCCTTCTCGCATCTTGTATGTTGCATTATGTCTAGTGTTTTCCATTATGTCTCAAAATGAGATAAGCCCGTGATAGTATTATTATAAATACTAAAGTAAGTTGGAGATATTAAATGTTGAGAGGTCGATTAATTGATGCAATCAGAACTCTTGAATTACAATTTGGATCAATCGTCCAAAAACGATTCTTCACCTTTCCCTTTTTTAATATGTCAGTGATATGTATTAGTTGCAACCTCTAATAGTTATTTTAACGCTTAAAAATTTAGGTTAACTACCGGTGCTCTTTCAAGGTTAATCCTATCCGATGATGCTCTTAGAATGGCTGTAAATGATATCAGGATGTCCAAGGTAACGCCATACTGTTTTTGAGATCATGATAGTTACCATTTTTTATTTTCTTTCAAAAAAATTTATTAGCACCATTCACATAATAATTTTTAAACATCAGACAATTTACGTGCATCATGTCTTCATATCAGTTTCTATATTATATAATCAATTTTGAAATTTACAGGGTATGAAGCCGCTCAAGTAGATTGGCAATCAAAACAAGCATAACTTAAGCAGTAATTGACATGTACTACTTCTTTCGAGATCCTAAGTTTAAATCTTCATCACCACATGTTAGCCATTAAGTACAATGTGGGAAGCTCAATGAACTTGTAACCGGAGAGATACTACGCAAGCAACTATCTTTCTTACTGTCGTGCTTAGCTCAACCGCTCAGGGCATTACTTACAGAATGACTGAAGGTTTGAATCTCCAATCTCGTTTTTTAATGCATGACGGTTAAAAACACTTGCTCTTGTTCCCTATTACTGAATCTGCTTTATCAACAAAGAGTTCTACTTTGTTCTCTCAACTGTTGTCAATTCTCTTGTATGTCTTGTGCTGGAAAGAGGCCGAGCTTTTACCTTTAGATAAAATGGGGGAAAAAGTTTACTTTTACTATGGCCTATAGGTAAGAGGTTTATGTTGCTG

mRNA sequence

GTTCCAACCTCAATCGGTCTACGTTGTTATGTTTATAAATATTTTGAGCCAAAAACAATTTTTTTAAATAAATATGCGACATAAAGTAAGCGATTTCCCAAATCGTTTTGTGAAGTGAGAAAATGGCAAACGCAAATATGCTCTGGAATTCCGCTAAGATTCTTGGATTTCCTGCTCCGATAGCAAGCAACGTCCGATGGGCAAGGTTCGGTTATAAGTTTCGGTTTCGGCATCATCCATTCGAGGGCTCTTTCTTCTTCTTCAACTCCTTGCGTTTCAATTGCAGCTCCAGTAATGCAAATTCAGTATGTAGTGGCAAAGAGTACTTAGTTTTGTCCGACGAAGAGCTGATGAAACAGTGCGAAATGGGCACGTTCAAGGCGTCAGGTCCCGGCGGTCAGCACCGCAACAAGCGCGAGTCTGCTGTTCGTTTGAAGCACATTCCCACTGGTATCATTGCTCAGGCTGTTGAGGATCGATCCCAGCATAAGAATCGATCCAGTGCCTTAGCTCGTCTACGTGCTCTCTTGGCCCTAAAAGTTAGGAACCCTGTGGATCTTGAAGATTATTCGCCTCCTCCAGAGCTTCTTCAAATTCTTCCTCCTAAGTCCACTGTTAGGCCACCGGAATGTGGCCCTCAAATTGGTCCTAACAATTCTAAGTTTCTGCCGGGCATGCAAGCTCTACTGGATCTAATTTCCACACTAGATGGTTCTGTATCAGACACAGCTAAGCTTTTAGGGTTAACTACCGGTGCTCTTTCAAGGTTAATCCTATCCGATGATGCTCTTAGAATGGCTGTAAATGATATCAGGATGTCCAAGGGTATGAAGCCGCTCAAGTAGATTGGCAATCAAAACAAGCATAACTTAAGCAGTAATTGACATGTACTACTTCTTTCGAGATCCTAAGTTTAAATCTTCATCACCACATGTTAGCCATTAAGTACAATGTGGGAAGCTCAATGAACTTGTAACCGGAGAGATACTACGCAAGCAACTATCTTTCTTACTGTCGTGCTTAGCTCAACCGCTCAGGGCATTACTTACAGAATGACTGAAGGTTTGAATCTCCAATCTCGTTTTTTAATGCATGACGGTTAAAAACACTTGCTCTTGTTCCCTATTACTGAATCTGCTTTATCAACAAAGAGTTCTACTTTGTTCTCTCAACTGTTGTCAATTCTCTTGTATGTCTTGTGCTGGAAAGAGGCCGAGCTTTTACCTTTAGATAAAATGGGGGAAAAAGTTTACTTTTACTATGGCCTATAGGTAAGAGGTTTATGTTGCTG

Coding sequence (CDS)

ATGGCAAACGCAAATATGCTCTGGAATTCCGCTAAGATTCTTGGATTTCCTGCTCCGATAGCAAGCAACGTCCGATGGGCAAGGTTCGGTTATAAGTTTCGGTTTCGGCATCATCCATTCGAGGGCTCTTTCTTCTTCTTCAACTCCTTGCGTTTCAATTGCAGCTCCAGTAATGCAAATTCAGTATGTAGTGGCAAAGAGTACTTAGTTTTGTCCGACGAAGAGCTGATGAAACAGTGCGAAATGGGCACGTTCAAGGCGTCAGGTCCCGGCGGTCAGCACCGCAACAAGCGCGAGTCTGCTGTTCGTTTGAAGCACATTCCCACTGGTATCATTGCTCAGGCTGTTGAGGATCGATCCCAGCATAAGAATCGATCCAGTGCCTTAGCTCGTCTACGTGCTCTCTTGGCCCTAAAAGTTAGGAACCCTGTGGATCTTGAAGATTATTCGCCTCCTCCAGAGCTTCTTCAAATTCTTCCTCCTAAGTCCACTGTTAGGCCACCGGAATGTGGCCCTCAAATTGGTCCTAACAATTCTAAGTTTCTGCCGGGCATGCAAGCTCTACTGGATCTAATTTCCACACTAGATGGTTCTGTATCAGACACAGCTAAGCTTTTAGGGTTAACTACCGGTGCTCTTTCAAGGTTAATCCTATCCGATGATGCTCTTAGAATGGCTGTAAATGATATCAGGATGTCCAAGGGTATGAAGCCGCTCAAGTAG

Protein sequence

MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNANSVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSKFLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK

Homology

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BLAST of IVF0006817 vs. ExPASy Swiss-Prot
Match: A7ZE19 (Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) OX=360104 GN=prfB PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 78  KQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSALARLRALL 137
           K  ++ T++ASG GGQH NK ESA+R+ HIPTGI+ Q   DRSQHKNR++A+  L++ L
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294

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BLAST of IVF0006817 vs. ExPASy Swiss-Prot
Match: B1XYX1 (Peptide chain release factor 1 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) OX=395495 GN=prfA PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 79  QCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSALARLRALLAL 138
           +  + T++ASG GGQH NK +SAVR+ H+PTG++A+  +DRSQH+N++ ALA L A L  
Sbjct: 221 ELRIDTYRASGAGGQHINKTDSAVRVTHLPTGLVAECQDDRSQHRNKARALAVLAARLRD 280

Query: 139 KVRNPVDLEDYSPPPELL 157
           +VR     +D +    L+
Sbjct: 281 RVRQEQAAKDAAARKSLI 298

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BLAST of IVF0006817 vs. ExPASy Swiss-Prot
Match: A5WFG1 (Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1) OX=349106 GN=prfA PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 82  MGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSALARLRA-LLALKV 141
           M TF++SG GGQH N  +SAVRL HIPTG++A+  ++RSQHKNR+ A+  L A +   KV
Sbjct: 227 MDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQMLIARIQQAKV 286

Query: 142 RNPVDLED 149
           +  VD  D
Sbjct: 287 QEQVDTAD 294

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BLAST of IVF0006817 vs. ExPASy Swiss-Prot
Match: A8EWG5 (Peptide chain release factor 2 OS=Arcobacter butzleri (strain RM4018) OX=367737 GN=prfB PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 78  KQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSALARLRALL 137
           K   + T++ASG GGQH NK ESA+R+ HIPTGI+ Q   DRSQHKN+ SA   L++ L
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAFKMLKSRL 294

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BLAST of IVF0006817 vs. ExPASy Swiss-Prot
Match: Q89AC4 (Peptide chain release factor 2 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=prfB PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 52  FNCSSSNANSVCSGKEYLVLSD----EELMKQCEMGTFKASGPGGQHRNKRESAVRLKHI 111
           FN       S  S   Y +L D    +   +  ++  ++ASG GGQH NK ESAVR++H+
Sbjct: 208 FNAHHRRHTSFSSVYVYPILDDAINVDINTRDLKIDVYRASGAGGQHVNKTESAVRIRHL 267

Query: 112 PTGIIAQAVEDRSQHKNRSSALARLRALL 137
           PTGI+ Q   DRSQHKN+  A+ +L+A L
Sbjct: 268 PTGIVVQCQNDRSQHKNKDQAMKQLKAKL 296

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BLAST of IVF0006817 vs. ExPASy TrEMBL
Match: A0A5A7T8S5 (Peptide chain release factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001580 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 8.7e-131
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240

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BLAST of IVF0006817 vs. ExPASy TrEMBL
Match: A0A1S3CAA2 (uncharacterized protein LOC103498609 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498609 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 8.7e-131
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240

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BLAST of IVF0006817 vs. ExPASy TrEMBL
Match: A0A0A0KUM8 (RF_PROK_I domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G646680 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.6e-124
Identity = 230/240 (95.83%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLW+SAKILGFP+PIASNVRWARF Y FR RH PFEGSFFFFNSLRFNCSSSNAN
Sbjct: 1   MANANMLWSSAKILGFPSPIASNVRWARFDYTFRLRHRPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVC+GK+YLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCNGKQYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILP KSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPLKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKG+KPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGLKPLK 240

[Close]

BLAST of IVF0006817 vs. ExPASy TrEMBL
Match: A0A1S3CAT7 (uncharacterized protein LOC103498609 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498609 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.5e-109
Identity = 213/240 (88.75%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLWNSAKILGFPAPIASNVRWA                           SSSNAN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWA---------------------------SSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 213

[Close]

BLAST of IVF0006817 vs. ExPASy TrEMBL
Match: A0A6J1EX22 (uncharacterized protein LOC111438876 OS=Cucurbita moschata OX=3662 GN=LOC111438876 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 203/240 (84.58%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MA ANMLW SAKIL  P PIASN RW R G  FR   H FEGS FF NSLR  CSSS+AN
Sbjct: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRI--HQFEGS-FFSNSLRSTCSSSSAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SV  GKEYL+LSDEELM+QCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRS
Sbjct: 61  SVWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNR+SALARLRA LALKVRNPVDLEDYSPPPELLQILP KST+RPP CGPQIGPNNSK
Sbjct: 121 QHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLI TLDGS+SDTAK +GLTTGA+SRLILSDD+LRMAVNDIR+SKGMKPLK
Sbjct: 181 FLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 237

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BLAST of IVF0006817 vs. NCBI nr
Match: XP_008459491.1 (PREDICTED: uncharacterized protein LOC103498609 isoform X1 [Cucumis melo] >KAA0039363.1 peptide chain release factor 1 [Cucumis melo var. makuwa] >TYK00546.1 peptide chain release factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 476 bits (1224), Expect = 3.64e-169
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240

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BLAST of IVF0006817 vs. NCBI nr
Match: XP_004141513.1 (uncharacterized protein LOC101217430 isoform X1 [Cucumis sativus] >KGN52594.1 hypothetical protein Csa_007986 [Cucumis sativus])

HSP 1 Score: 455 bits (1170), Expect = 6.22e-161
Identity = 230/240 (95.83%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLW+SAKILGFP+PIASNVRWARF Y FR RH PFEGSFFFFNSLRFNCSSSNAN
Sbjct: 1   MANANMLWSSAKILGFPSPIASNVRWARFDYTFRLRHRPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVC+GK+YLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCNGKQYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILP KSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPLKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKG+KPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGLKPLK 240

[Close]

BLAST of IVF0006817 vs. NCBI nr
Match: XP_038891024.1 (peptide chain release factor 1 [Benincasa hispida])

HSP 1 Score: 410 bits (1054), Expect = 2.67e-143
Identity = 216/240 (90.00%), Postives = 221/240 (92.08%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANML NSAKILGFP PIAS  RWARFG  F   HHPFEGSFFF NSL  NCSS+ AN
Sbjct: 1   MANANMLCNSAKILGFPLPIASKGRWARFGCTFW--HHPFEGSFFF-NSLHSNCSSTTAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SV +GKEYLVLSDEELMKQCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRS
Sbjct: 61  SVWNGKEYLVLSDEELMKQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNR+SALARLRA LALKVRNPVDLEDYSPPPELLQILP KST+RPPECGPQIGP NSK
Sbjct: 121 QHKNRASALARLRAFLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPECGPQIGPKNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIR+SKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRISKGMKPLK 237

[Close]

BLAST of IVF0006817 vs. NCBI nr
Match: XP_008459492.1 (PREDICTED: uncharacterized protein LOC103498609 isoform X2 [Cucumis melo])

HSP 1 Score: 403 bits (1035), Expect = 8.88e-141
Identity = 213/240 (88.75%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLWNSAKILGFPAPIASNVRWA                           SSSNAN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWA---------------------------SSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 213

[Close]

BLAST of IVF0006817 vs. NCBI nr
Match: XP_031740950.1 (uncharacterized protein LOC101217430 isoform X2 [Cucumis sativus])

HSP 1 Score: 392 bits (1008), Expect = 1.16e-136
Identity = 207/240 (86.25%), Postives = 212/240 (88.33%), Query Frame = 0


Query: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60
           MANANMLW+SAKILGFP+PIASNVRWA                           SSSNAN
Sbjct: 1   MANANMLWSSAKILGFPSPIASNVRWA---------------------------SSSNAN 60

Query: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120
           SVC+GK+YLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS
Sbjct: 61  SVCNGKQYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180
           QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILP KSTVRPPECGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPLKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240
           FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKG+KPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGLKPLK 213

[Close]

BLAST of IVF0006817 vs. TAIR 10
Match: AT1G33330.1 (Class I peptide chain release factor )

HSP 1 Score: 261.2 bits (666), Expect = 8.4e-70
Identity = 131/173 (75.72%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 68  YLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSS 127
           YL  +DEELMKQC + TF+ SGPGGQHRNKR+SAVRLKH+PTGI+AQAVEDRSQHKNR+S
Sbjct: 86  YLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRAS 145

Query: 128 ALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSKFLPGMQA 187
           AL RLR LLA+KVRN VD+E Y+PPPELLQILPPKST+R    G QIGPNN KF+PGMQA
Sbjct: 146 ALNRLRTLLAIKVRNKVDIEAYAPPPELLQILPPKSTIR-TSSGSQIGPNNPKFVPGMQA 205

Query: 188 LLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 241
           LLD+IS  DGS++D+AKLLGL+TG LSRLILS D LRMAVN +R +KG+KPLK
Sbjct: 206 LLDVISASDGSIADSAKLLGLSTGGLSRLILSHDGLRMAVNSMRAAKGIKPLK 257

[Close]

BLAST of IVF0006817 vs. TAIR 10
Match: AT1G56350.1 (Peptide chain release factor 2 )

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 85  FKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSALARLRALL 137
           F++ G GGQH N  +SAVR+ HIPTGI A    +RSQH N++SA+A L++ L
Sbjct: 353 FRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRL 404

[Close]

BLAST of IVF0006817 vs. TAIR 10
Match: AT5G36170.1 (high chlorophyll fluorescent 109 )

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-09
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 64  SGKEYLVLSDEELM------KQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVE 123
           SG E + L  EE +      +  ++   +A G GGQ+ NK E+AVR+ HIPTG+  +  E
Sbjct: 297 SGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTE 356

Query: 124 DRSQHKNRSSALARLRALL 137
           +RSQ  N++ AL RL+A L
Sbjct: 357 ERSQLANKTRALIRLKAKL 375

[Close]

BLAST of IVF0006817 vs. TAIR 10
Match: AT5G36170.2 (high chlorophyll fluorescent 109 )

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-09
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 64  SGKEYLVLSDEELM------KQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVE 123
           SG E + L  EE +      +  ++   +A G GGQ+ NK E+AVR+ HIPTG+  +  E
Sbjct: 296 SGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTE 355

Query: 124 DRSQHKNRSSALARLRALL 137
           +RSQ  N++ AL RL+A L
Sbjct: 356 ERSQLANKTRALIRLKAKL 374

[Close]

BLAST of IVF0006817 vs. TAIR 10
Match: AT2G47020.1 (Peptide chain release factor 1 )

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-08
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 84  TFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHKNRSSAL----ARLRALLALK 143
           T+++ G GGQH N   SAVR+ H+PTG++    ++RSQH NR+ AL    ARL  +  L+
Sbjct: 278 TYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLR 337

The following BLAST results are available for this feature:

BLAST of IVF0006817 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7ZE19	3.5e-12	55.93	Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) OX=36010...	[more]
B1XYX1	1.0e-11	44.87	Peptide chain release factor 1 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG ...	[more]
A5WFG1	1.0e-11	52.94	Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1) OX=349106 GN...	[more]
A8EWG5	1.0e-11	55.93	Peptide chain release factor 2 OS=Arcobacter butzleri (strain RM4018) OX=367737 ...	[more]
Q89AC4	1.0e-11	42.70	Peptide chain release factor 2 OS=Buchnera aphidicola subsp. Baizongia pistaciae...	[more]

BLAST of IVF0006817 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8S5	8.7e-131	100.00	Peptide chain release factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CAA2	8.7e-131	100.00	uncharacterized protein LOC103498609 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KUM8	1.6e-124	95.83	RF_PROK_I domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G646680 P...	[more]
A0A1S3CAT7	5.5e-109	88.75	uncharacterized protein LOC103498609 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1EX22	1.4e-104	84.58	uncharacterized protein LOC111438876 OS=Cucurbita moschata OX=3662 GN=LOC1114388...	[more]

BLAST of IVF0006817 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459491.1	3.64e-169	100.00	PREDICTED: uncharacterized protein LOC103498609 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_004141513.1	6.22e-161	95.83	uncharacterized protein LOC101217430 isoform X1 [Cucumis sativus] >KGN52594.1 hy...	[more]
XP_038891024.1	2.67e-143	90.00	peptide chain release factor 1 [Benincasa hispida]	[more]
XP_008459492.1	8.88e-141	88.75	PREDICTED: uncharacterized protein LOC103498609 isoform X2 [Cucumis melo]	[more]
XP_031740950.1	1.16e-136	86.25	uncharacterized protein LOC101217430 isoform X2 [Cucumis sativus]	[more]

BLAST of IVF0006817 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33330.1	8.4e-70	75.72	Class I peptide chain release factor	[more]
AT1G56350.1	1.7e-09	53.85	Peptide chain release factor 2	[more]
AT5G36170.1	6.4e-09	41.77	high chlorophyll fluorescent 109	[more]
AT5G36170.2	6.4e-09	41.77	high chlorophyll fluorescent 109	[more]
AT2G47020.1	3.2e-08	42.86	Peptide chain release factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000352	Peptide chain release factor class I	PFAM	PF00472	RF-1	coord: 78..137 e-value: 1.8E-19 score: 69.8
None	No IPR available	GENE3D	3.30.160.20		coord: 49..143 e-value: 5.7E-25 score: 89.2
None	No IPR available	PANTHER	PTHR43804:SF6	CLASS I PEPTIDE CHAIN RELEASE FACTOR	coord: 48..237
None	No IPR available	PANTHER	PTHR43804	LD18447P	coord: 48..237
None	No IPR available	SUPERFAMILY	75620	Release factor	coord: 78..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006817.1	IVF0006817.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
molecular_function	GO:0003747	translation release factor activity