IVF0006699 (gene) Melon (IVF77) v1

Overview


Name	IVF0006699
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr02: 14797713 .. 14797880 (+)
RNA-Seq Expression	IVF0006699
Synteny	IVF0006699

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGTAACGACGTTGACGACGAGGACGAAGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAATACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAATTGCGTAACGCTTAA

mRNA sequence

ATGACATATTGTAACGACGTTGACGACGAGGACGAAGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAATACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAATTGCGTAACGCTTAA

Coding sequence (CDS)

ATGACATATTGTAACGACGTTGACGACGAGGACGAAGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAATACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAATTGCGTAACGCTTAA

Protein sequence

MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA

Homology

[Close]

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5D3CJ50 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold981G00180 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWR+DLAESMFTEWQLRNA
Sbjct: 53  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRNDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC+D+DDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7SZH3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00390 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC DVDDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 287 MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 341

[Close]

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7UG16 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00090 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 255 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 309

[Close]

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7UZF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00690 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC DVDDEDEGDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0006699 vs. NCBI nr
Match: TYK11987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 1.12e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWR+DLAESMFTEWQLRNA
Sbjct: 53  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRNDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0006699 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.59e-30
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC+D+DDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0006699 vs. NCBI nr
Match: KAA0058871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 6.48e-30
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC DVDDEDEGDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

[Close]

BLAST of IVF0006699 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.31e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC DVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFT+WQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

[Close]

BLAST of IVF0006699 vs. NCBI nr
Match: TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 1.79e-29
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
          MTYC++VDD+DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 
Sbjct: 1  MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNT 55

The following BLAST results are available for this feature:

BLAST of IVF0006699 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006699 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJ50	2.0e-22	98.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4Q8	2.6e-22	96.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SZH3	5.8e-22	96.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UG16	5.8e-22	96.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UZF0	7.5e-22	96.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0006699 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11987.1	1.12e-30	98.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062284.1	1.59e-30	96.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058871.1	6.48e-30	96.36	retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon p...	[more]
TYK05336.1	1.31e-29	94.55	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04228.1	1.79e-29	92.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006699 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006699.1	IVF0006699.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding