IVF0006699 (gene) Melon (IVF77) v1

Overview
NameIVF0006699
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr02: 14797713 .. 14797880 (+)
RNA-Seq ExpressionIVF0006699
SyntenyIVF0006699
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGTAACGACGTTGACGACGAGGACGAAGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAATACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAATTGCGTAACGCTTAA

mRNA sequence

ATGACATATTGTAACGACGTTGACGACGAGGACGAAGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAATACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAATTGCGTAACGCTTAA

Coding sequence (CDS)

ATGACATATTGTAACGACGTTGACGACGAGGACGAAGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAATACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAATTGCGTAACGCTTAA

Protein sequence

MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Homology
BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5D3CJ50 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold981G00180 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWR+DLAESMFTEWQLRNA
Sbjct: 53  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRNDLAESMFTEWQLRNA 107

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC+D+DDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7SZH3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00390 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC DVDDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 287 MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 341

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7UG16 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00090 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 255 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 309

BLAST of IVF0006699 vs. ExPASy TrEMBL
Match: A0A5A7UZF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00690 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC DVDDEDEGDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0006699 vs. NCBI nr
Match: TYK11987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 1.12e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWR+DLAESMFTEWQLRNA
Sbjct: 53  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRNDLAESMFTEWQLRNA 107

BLAST of IVF0006699 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.59e-30
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC+D+DDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0006699 vs. NCBI nr
Match: KAA0058871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 6.48e-30
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC DVDDEDEGDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0006699 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.31e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC DVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFT+WQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0006699 vs. NCBI nr
Match: TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 1.79e-29
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
          MTYC++VDD+DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 
Sbjct: 1  MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNT 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CJ502.0e-2298.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4Q82.6e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SZH35.8e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UG165.8e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UZF07.5e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK11987.11.12e-3098.18retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062284.11.59e-3096.36retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058871.16.48e-3096.36retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon p... [more]
TYK05336.11.31e-2994.55retrotransposon protein [Cucumis melo var. makuwa][more]
TYK04228.11.79e-2992.73retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006699.1IVF0006699.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding