IVF0006443 (gene) Melon (IVF77) v1

Overview


Name	IVF0006443
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Coiled-coil domain-containing protein 12
Location	chr12: 24084590 .. 24088887 (+)
RNA-Seq Expression	IVF0006443
Synteny	IVF0006443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGATTGAAGTCTTGATGGGCCTCTTACGATCCTGGCCTTATATATATACTTCATTCCGAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTGTCCCTCCCGCCATTGCCCCAAGCTAACTTTCGCTAGTACAATTCTCTGAACAAAAGTTCCATTCCTCTATAGTTTCTCTGTAAGTATATTTCTTCTGCGGAACTTTTTAATTGCGCCTCTTGATTTTCTCATCTTCGTGTTGCTTCTACCGCTGTCTGCTCTTCTTTTTGATGAATTTTCGTCATCTGTGTGGCTATCTCACAGGTTAAGTAGATGAAATTATTGACTGATGTATTTTGAAAATGTCTTTGAATACCTTAATTTTTCTTTAATTTTCACTTTCCGATTTTTCATCTCTTTGAATGCACATAGTTGTGGTATTGTCATAGTTCTTTTGTTGAGAACAATCGAGAGTGATGTTGAGTTATTTTCGTATCAGATATTTTACGCACAACAGGCAATGGCTACCGAAGAAGACTCCTTCGAACAAGTTGCTGCAGCACGTAAGGAGAGATTGAAAGCTCTTAGAGCTGCTCAGGAATTGTTAAACGCTTCAGATGAGAAAAATTCTGTAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGATGAAACGTGAGTTTATATTTTCTTTCTTTCTATTTTTTCTCGCAGTTCTCGATTTCTTGATTCATTCTATCAATATATCAATTCAATTCTAAGCATATTTGCTAGTTCAGTTTGATTTCTCTGACTGCAATATCTTCTCTCTGCTCAACTCGACTTCTCATTTAAATATGTTTTTACATATCTATTCTATGGTATCCTCTCCAAATTCATGATCCTAAACTATATTTACACTCAGAAATTAGAAACTTAAGAAAATAAGAAATATGAATGGATTTGAAAGAAAACACTGAAAAAGTTGCACGGTAGTACATTAAGGCAAATTATTCTGTAGGAAGATTTTAATTACTCAGATCTCCTAGAAACTGATACTTCACTGGAAAGAAGATTTCCTGCTACTCTCTCGTCTTGAATGTATTTCTTCTTCTTCCTCTGCCTTGAACCACTCTCTTTTATCTCGTTTTTTCCTTCTATTTTAACTATTTCTTTCTCATTCCCTTTCTCTTCCCCTTCCTTTACCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCCTTTATTATACGGTGGGAGTCTATGCTGAAATGACATATTTAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTCACAGACAACTAACGCATGCTGTTGCCAGTGTTCTAAGCTCCCTAGATCTTCGATCGGGGCATATTACAAACAAAAGCCTTGGCCATATTGCATTGTAGGGGCAGGACAGACAAAAGTTGTCTCCCTTTCCTTAATAAACTGTGTCTTTCTTTCTGCAGACTAAAGTCGCAAAATGGCCCCAAAAGCTATAGAAAGACCAAACCAAATATATGATAAAATAGTACTAGAAACTAAGCTGTAAAGTTTATGTTAACACAAAGCATGTGAAATGTGAATTATGCTCATAAAATTATCCTCCCTTCAATAAGATGTTTACTTCTTTTTTTTTCCTTTTCATTTCCTTTTCAATTCTTTCTTTCTTTCCTTTTGTTTTTGTTATTGTTTCTGTTTCTTTTTTGTGTTTTTTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATCGCAATGCTTCATACACAGCTTAATTGCTTATTTGTTTTTTTGGATATGTTCTCATGGTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATATGTTTTGTTTGATGCTGTTCTCATTGCCAACTCAGTTGAAAAATTGATGTACTCAGTTACAATAGAAACTTCCCTCTTGGGAGAGTGCAAAATACAGACACACTTATTTTTTGATGTTGAATTTTTATATGCCCCGTGCCTCTTTAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTTAATATGAAATTTCGAAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACAAAAAGAGGTAATTCTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGGATCCTTTTCTATTAATTATACTCGATCTGTAAAATTATAGGACCCATTTGTAAACATTGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCATTATATAAGCTTATGGGTAAGTAGAAATATTCAATTAAAGGTCTGTGAACTTGATAGGTCATTAATTTATGCACGTTCTTGAACTTGCCTTTTCTGGTAGTGTAGCTAGATTATGGACTGAATTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTTGACATAATTGGAATATACATAATTCTATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACATATGAGCAAATGTCTATGCACCGCTGCATTTATGAACAATTTAGAGATCTTGATTATCATCTTCAAGCATTCGTGTTGAAGTTAAACATGTGTGAATGTACTGTTGGTTGGAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACATAAAGATTGGATGAAACAAATATCTTTAGGTGAGTTAATTTAATCCAAAAGGTACATATGTTTAGTCATACCAACTCCTAAAGGGAGAGGAAAAAAAAAGGAACAAAACAACAAATACAACCATACAATTATTTAGCCTTGAACGTAAGCATTAAAGTACAAAGGACTTCTTCAAAATCTTCGCCTAAACAACTTGGAGAGCTCGCAAACAGAAACTGTTCCTATGGAAGGACCTCCTCCAAACACTGAACTGAAACCTTCTACAACATTCCAAAGGAAACCCTCAGCAGTCTTCAACGTAGCTACCTTGAAAAACTGAAAAGTATACAAGACAGTTGCAAATGTACTGCTTGTAGAAAACACTGATGCAACAAGTCCAACAAAACCAATGAGCACAAACCTCTAAGGACGAAAAACCAAACTTCTCCTATGACCATGATTAAGGCTCCCGATCAAGTGACCAGTATAACTCTATTGTATCACCTTTAATTCCAAATTGGAATCCATTCTCAAAAGAATGAAGTTCATTGATTTTCATTTTAACAATTTATGAATGGATGAAATTTCTTTGCAGTTCTTTTGACTTTAATCTCAGCATACCATGGCTAAATAAGAACAATCACAGCCCTTTGTTAACTTCCACTGGATCAATGACTGGGATTTGTTGACTCTTCTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGATGCTCATCTCTACCGGGATTATGAGCTGTTTTCAATCTTGAAATTTGAACTTGGCTGGGCTGTAGAAGTTTTGGGGGATAGGGGTTTTTGCTTATTTATTCATTTACTTGGGACATCACACTTCAAATAGGAGATGAGGCTTTGAACTATGATTTTTAGAAGGAATTACATGTCTTATAGTTGTATTCAAATTGATGTAGGTTACTCTAGTTAGCTAGTTATGCATTGGAACTTGCAAGAGTGGTTATTATGTGTATCATAGAGACGCTAGAAAATTATTTGAAGCTCTGAAATTACAGATTGGTTAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTTTAACTTTTTGATTGTTCAATTTTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGTGATAGTTTGGCACACAAATTATGTTCTCTCCGATGTTACAGTTGCAGCAATATTCACAACTATATCGACATGCTTGGAGAAAATTGTCACTAAAAGGACAATGGCGTTTCTGGCTCGTAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGGTGCAAATATTTTGATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGTCTCATACTGGATATAGTGGATAGTGATTTGTAATTTACCTAAACTAAAAATAACTTTGTATTTCACTTTTATCTTCTACATTGTTGTTTTTCTTCTTCTTCA

mRNA sequence

ATCCGATTGAAGTCTTGATGGGCCTCTTACGATCCTGGCCTTATATATATACTTCATTCCGAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTGTCCCTCCCGCCATTGCCCCAAGCTAACTTTCGCTAGTACAATTCTCTGAACAAAAGTTCCATTCCTCTATAGTTTCTCTATATTTTACGCACAACAGGCAATGGCTACCGAAGAAGACTCCTTCGAACAAGTTGCTGCAGCACGTAAGGAGAGATTGAAAGCTCTTAGAGCTGCTCAGGAATTGTTAAACGCTTCAGATGAGAAAAATTCTGTAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGATGAAACTAATCTTAATATGAAATTTCGAAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACAAAAAGAGGACCCATTTGTAAACATTGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCATTATATAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGTGATAGTTTGGCACACAAATTATGTTCTCTCCGATGTTACAGTTGCAGCAATATTCACAACTATATCGACATGCTTGGAGAAAATTGTCACTAAAAGGACAATGGCGTTTCTGGCTCGTAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGGTGCAAATATTTTGATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGTCTCATACTGGATATAGTGGATAGTGATTTGTAATTTACCTAAACTAAAAATAACTTTGTATTTCACTTTTATCTTCTACATTGTTGTTTTTCTTCTTCTTCA

Coding sequence (CDS)

ATGGCTACCGAAGAAGACTCCTTCGAACAAGTTGCTGCAGCACGTAAGGAGAGATTGAAAGCTCTTAGAGCTGCTCAGGAATTGTTAAACGCTTCAGATGAGAAAAATTCTGTAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGATGAAACTAATCTTAATATGAAATTTCGAAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACAAAAAGAGGACCCATTTGTAAACATTGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCATTATATAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGTGA

Protein sequence

MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE

Homology

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BLAST of IVF0006443 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 0


Query: 9   EQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKE 68
           E+ A  RKERLKALR   E     D+++   + K      +  E +  ++ RNYVP D++
Sbjct: 12  EEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDED 71

Query: 69  LQEGKLAPPVLPKFEDPVTTEPPQQKEDPFV------NIAPKKPNWDLRRDVQKKLDKLE 128
           L++ ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+KL+
Sbjct: 72  LKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLK 131

Query: 129 RRTQKALYKLMEEQEKQKQ 142
           +RTQ+A+ +L+ E+ K ++
Sbjct: 132 KRTQRAIAELIRERLKGQE 147

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BLAST of IVF0006443 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11
Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 9   EQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFRNYVPHDKE 68
           E+ A  RKERLKALR   E     D ++   + K+     +    +  ++ RNYVP D++
Sbjct: 12  EEEALRRKERLKALR---EKTGRKDREDGEPQTKQLREEGEEVGKHRGLRLRNYVPEDED 71

Query: 69  LQEGKLAPPVLPKFEDPVTTEPPQQKEDPFV------NIAPKKPNWDLRRDVQKKLDKLE 128
           L+  ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+KLE
Sbjct: 72  LKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLE 131

Query: 129 RRTQKALYKLMEEQEKQKQ 142
           +RTQ+A+ +L+ E+ K ++
Sbjct: 132 KRTQRAIAELIRERLKGQE 147

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BLAST of IVF0006443 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 154
           LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

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BLAST of IVF0006443 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 154
           LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

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BLAST of IVF0006443 vs. ExPASy TrEMBL
Match: A0A0A0LR08 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 154
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of IVF0006443 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDS EQVAAAR+ERL+ALR AQELLNA DEK S GED+ENG  ADT+ETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 154
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQNG E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 153

[Close]

BLAST of IVF0006443 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.3e-65
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 154
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153

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BLAST of IVF0006443 vs. NCBI nr
Match: XP_008437152.1 (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >TYJ99079.1 coiled-coil domain-containing protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (741), Expect = 2.12e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153
           LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of IVF0006443 vs. NCBI nr
Match: XP_038894163.1 (coiled-coil domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 273 bits (697), Expect = 1.12e-91
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDS EQVAAARKERL+ALRAAQELLNASDEKNS GEDKENGATAD +ETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATADAEETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTTEP Q KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPAQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 153

[Close]

BLAST of IVF0006443 vs. NCBI nr
Match: XP_004137537.1 (coiled-coil domain-containing protein 12 [Cucumis sativus] >XP_031743618.1 coiled-coil domain-containing protein 12 [Cucumis sativus] >KGN64229.2 hypothetical protein Csa_013562 [Cucumis sativus])

HSP 1 Score: 270 bits (689), Expect = 1.80e-90
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

[Close]

BLAST of IVF0006443 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (668), Expect = 2.96e-87
Identity = 139/153 (90.85%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GEDKENGA ADT+ETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153

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BLAST of IVF0006443 vs. NCBI nr
Match: KAG6584286.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260 bits (665), Expect = 8.21e-87
Identity = 137/150 (91.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MATE+DS EQVAAARKERL+ALRAAQELLN SDEKNS GEDKENGAT D +ETNL+MKFR
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNTSDEKNSGGEDKENGATEDPEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL PPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQN 150
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQN 150

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BLAST of IVF0006443 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 175.3 bits (443), Expect = 3.9e-44
Identity = 100/148 (67.57%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60
           MA+E++S EQ AAARKE LKALRAAQEL           E KE+G     +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QQKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+   PP  ++KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQAAEGD 147
           DKLERRTQKA++KLMEEQEK+++ AE D
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEAD 138

The following BLAST results are available for this feature:

BLAST of IVF0006443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WUD4	1.1e-11	35.25	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
Q8R344	2.5e-11	35.25	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]

BLAST of IVF0006443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3ATB1	1.3e-74	100.00	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
A0A5D3BJ95	1.3e-74	100.00	Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0LR08	1.3e-68	93.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1	[more]
A0A6J1JYP1	1.4e-65	89.54	coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1GST8	5.3e-65	89.54	coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of IVF0006443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437152.1	2.12e-98	100.00	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160...	[more]
XP_038894163.1	1.12e-91	94.77	coiled-coil domain-containing protein 12 [Benincasa hispida]	[more]
XP_004137537.1	1.80e-90	93.46	coiled-coil domain-containing protein 12 [Cucumis sativus] >XP_031743618.1 coile...	[more]
XP_023542240.1	2.96e-87	90.85	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
KAG6584286.1	8.21e-87	91.33	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of IVF0006443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05070.1	3.9e-44	67.57	CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..153
IPR013169	mRNA splicing factor Cwf18-like	PFAM	PF08315	cwf18	coord: 8..135 e-value: 1.2E-33 score: 116.7
IPR013169	mRNA splicing factor Cwf18-like	PANTHER	PTHR31551	PRE-MRNA-SPLICING FACTOR CWF18	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006443.2	IVF0006443.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071014	post-mRNA release spliceosomal complex
cellular_component	GO:0005684	U2-type spliceosomal complex