IVF0005869 (gene) Melon (IVF77) v1

Overview
NameIVF0005869
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 20442633 .. 20442800 (+)
RNA-Seq ExpressionIVF0005869
SyntenyIVF0005869
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCACGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA
Homology
BLAST of IVF0005869 vs. ExPASy TrEMBL
Match: A0A5A7VL61 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001220 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 56
           MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 362

BLAST of IVF0005869 vs. ExPASy TrEMBL
Match: A0A5A7SMB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001310 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 56
           MTYCDDV+DEDEGDSTYATTT SEDIQYIETTNEWSQWHDDLAESMFT+WQLRNA
Sbjct: 300 MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRNA 354

BLAST of IVF0005869 vs. ExPASy TrEMBL
Match: A0A5D3CHC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00340 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.9e-22
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 56
           MTYC+DVEDEDEGDSTYATTT SEDIQYIETTNEWSQWHDDLAESMFT+WQLRNA
Sbjct: 240 MTYCEDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRNA 294

BLAST of IVF0005869 vs. ExPASy TrEMBL
Match: A0A5A7TUU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003210 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.9e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 56
           MTYCDDVEDEDEGDSTYATTT SEDIQYIETTNEWSQW DDLAESMFTDWQLRNA
Sbjct: 287 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 341

BLAST of IVF0005869 vs. ExPASy TrEMBL
Match: A0A5A7USE5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001970 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 56
           MTYCDDV+DEDEGDSTYATTT SEDIQYIETTNEWSQWHDDL ESMFT+WQLRNA
Sbjct: 276 MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLVESMFTEWQLRNA 330

BLAST of IVF0005869 vs. NCBI nr
Match: KAA0068154.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 7.59e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 55
           MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 362

BLAST of IVF0005869 vs. NCBI nr
Match: KAA0038851.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 1.47e-28
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 55
          MTYCDDVEDEDEGDSTYATTT SEDIQYIETTNEWSQW DDLA SMFTDWQ RNA
Sbjct: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFRNA 55

BLAST of IVF0005869 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 3.07e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 55
           MTYCDD++DEDEGDSTYATTT SEDIQYIETTNEWSQW DDLAESMFT+WQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0005869 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 6.20e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 55
           MTYC+DV+DEDEGDSTYATTT SEDIQYIETTNEWSQW DDLAESMFTDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0005869 vs. NCBI nr
Match: KAA0041029.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 1.78e-27
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWHDDLAESMFTDWQLRNA 55
           MTYCDDVEDEDEGDSTYATTT SEDIQYIETTNEWSQW DDLA SMFTDWQ RNA
Sbjct: 53  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWCDDLAASMFTDWQFRNA 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VL613.1e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SMB57.5e-2294.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHC39.9e-2294.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TUU49.9e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7USE52.2e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0068154.17.59e-29100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038851.11.47e-2892.73retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062284.13.07e-2890.91retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05336.16.20e-2890.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041029.11.78e-2792.73retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005869.1IVF0005869.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding