IVF0005726 (gene) Melon (IVF77) v1

Overview


Name	IVF0005726
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	chr04: 1936823 .. 1939282 (+)
RNA-Seq Expression	IVF0005726
Synteny	IVF0005726

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATATATCTAAAACGTCGACGTTTCAATCCCTTCCAATTCCCTTATCCAAATCCATGGCGTATTTGTGTTAACTCTATGTTGCTTTCAAACTAGAAGAGAGTGAACAGAGTGCGGTGAGCTCCGGCGATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCCTTCGCTCTAAACAACACCACCATATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGGTATGCAATATTAGTTTGTTTTAGTGTAAGAACATTTTCTCTTTCAATTTCTGTTTGACGGTTTTGGTTTATTGTAAATTGATGATCGGTGTCTTTTTTTCAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGTAAGCAGGACGATGTTTTTCTTAGAATGATTTTCAATTTTTTTACTATGTTCAATTTTGTCACTGAGGCTTAAAACAATATTTACCCTCCATTATGAAAAAACTTTCTCGATAGAAATTAATCGCGTTTGCCTCTAGTTTGATTTGCTTCTGTGTGATCCATAAATAGAGTCGAACATAGTAAAATAAGCAATTGAAAGATTTATGAAATTGTTCGTTTGGAAATTTTCTGAAAAGCTATCATAGATTCTTCTTTCCATCGGAACAATCGGGTCATTAAGCTTATTACAAAACTTGTTGAAGAGATGAAAAGTAACCAAGATATATCTTTTTTATTAGAGCTTGAATGGATTATCAGAAGTAGAACTAGGCAAAAGAAAAATTAGGATACATTCTCGAAAAATAAAACTAAGCTTGCATCCTGCTTGTGTGTGTTGCAGCTGCATTTCAATTTTGGTTAAAGCAAAGAATACAGTGTTTCCATTCATTTCAAAACTTAGATGATCCCTTCCCGTATTAAACACGAATCTTCTGATTCATTTGCCTCTCACTCCCATTTATTGCAATTGTTTCTGTCTCTGAGAAATTCCCATGTGTTATTTTGAACTCTTGTTGGCTTTGTTTAATGAAATGGTTAACATAAATGCAGGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGGTAATTTCAATATTGTTACAATCCCCTTTATTAAATGAATAGCCATAGAACCATTCAAATGTGAATATCACCATTTTATGAGGCTTCATCTGATAAAGTGCAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAAAATACTTAAGCTTCTCACTAGAAGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTCTTTTTCTTCTTCTTTCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAGCGCGCCACTTTTCTTTTTCTTTTACCTATAAATGTCCAACATCTAATGTTTAAAGGATTCAAAGTTGGATACCCCAACAGAATGGGCACATCACTGAAAAATCCCCATATGGATTAACGAGTGTATATTAGATCATTTTTGTATCCTTTCTCTATTGATTTGACTCTAGCTCCCCTGAGTGATTTAAGATATTTATTTAACTTTTTTCCCTCTTTTGCTATGCTCAATCTTAATGGTGCTCGATTGATGCATGTTAGTGTCATTGAGTTTAGTATCTAACTAATGAATAAATATGAATGTACTAGGCTTCATAGTTCCACCAGGATAGGATCATTCTAAGAGCCATAAGAAGCAAATTTTCATGGACCGACCAAATATGCTGGGGCCTTGGGCTACCTACCTTCTCTCTAATCATACTTTTCATTTCTTTTTCGGAAGGTATAGATAGCACACGTG

mRNA sequence

CCATATATCTAAAACGTCGACGTTTCAATCCCTTCCAATTCCCTTATCCAAATCCATGGCGTATTTGTGTTAACTCTATGTTGCTTTCAAACTAGAAGAGAGTGAACAGAGTGCGGTGAGCTCCGGCGATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCCTTCGCTCTAAACAACACCACCATATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAAAATACTTAAGCTTCTCACTAGAAGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTCTTTTTCTTCTTCTTTCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAGCGCGCCACTTTTCTTTTTCTTTTACCTATAAATGTCCAACATCTAATGTTTAAAGGATTCAAAGTTGGATACCCCAACAGAATGGGCACATCACTGAAAAATCCCCATATGGATTAACGAGTGTATATTAGATCATTTTTGTATCCTTTCTCTATTGATTTGACTCTAGCTCCCCTGAGTGATTTAAGATATTTATTTAACTTTTTTCCCTCTTTTGCTATGCTCAATCTTAATGGTGCTCGATTGATGCATGTTAGTGTCATTGAGTTTAGTATCTAACTAATGAATAAATATGAATGTACTAGGCTTCATAGTTCCACCAGGATAGGATCATTCTAAGAGCCATAAGAAGCAAATTTTCATGGACCGACCAAATATGCTGGGGCCTTGGGCTACCTACCTTCTCTCTAATCATACTTTTCATTTCTTTTTCGGAAGGTATAGATAGCACACGTG

Coding sequence (CDS)

ATGTTCGCAAAATCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA

Protein sequence

MFAKSSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAEV

Homology

[Close]

BLAST of IVF0005726 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.0e-21
Identity = 82/281 (29.18%), Postives = 145/281 (51.60%), Query Frame = 0


Query: 30  CHNPLISIMAKRTSKFVFQF---ASTSQDEAVSS-------------SPSDIEEFSRT-- 89
           C NPLI     R  +F       AS++ DE  +S                ++EE  +T  
Sbjct: 51  CPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQ 110

Query: 90  ------RLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEE 149
                 RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVTMGS EE
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEE 170

Query: 150 ALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFN---------LFVANLPFE 209
           A  A+    S +  GRT+++N+ ++ +   +  ++ K    N         ++  NL + 
Sbjct: 171 AKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWN 230

Query: 210 ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGR 269
             ++ L++ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G    GR
Sbjct: 231 LTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 290

Query: 270 SLRV----ARSKQFVKLPSEEKSQSEDASTDGVE-LANAAA 271
           +LR+     R K  V  PS E+ ++E+AS +  E L+N +A
Sbjct: 291 ALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of IVF0005726 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-19
Identity = 78/260 (30.00%), Postives = 129/260 (49.62%), Query Frame = 0


Query: 5   SSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQD--------- 64
           SSYP      LS ++  P  LS+S+   P +  + KRT++F    +  S+D         
Sbjct: 21  SSYPF-----LS-TQLKPISLSSSL---PTLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQ 80

Query: 65  EAVSSSPSDIEEFSRT----------RLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMY 124
           E     PS + E   T          +L   N+P+D   E +  LF++ G V+++   +Y
Sbjct: 81  EQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIY 140

Query: 125 NK--IRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVT 184
           N+   R+RG  FVTM + EEA  A+     Y+  GR L +N A  +  +P    +    T
Sbjct: 141 NRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT 200

Query: 185 FNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAI 244
           + ++V N+P++     L + F S  G VVSA+++F     RS G+GFV   ++ +   AI
Sbjct: 201 YRIYVGNIPWDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 260

[Close]

BLAST of IVF0005726 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.5e-19
Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 0


Query: 45  FVFQFASTSQDEAVSSSPSDIEEFSR----TRLLAQNVPWDSTPEDIRSLFEKYGTVLDV 104
           FV       + + V +   + EEF       +L   N+P+D   E +  LFE+ G V+++
Sbjct: 107 FVEAVGDAGESDEVEADEEE-EEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEI 166

Query: 105 ELSMYNK--IRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVK 164
              +YN+   ++RG  FVTM + EEA  A+     Y+  GR L +N A  + E+P  P +
Sbjct: 167 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPR 226

Query: 165 PKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKD 224
               ++ ++V N+P+      L + F S  G VVSA++++     RS G+GFV   ++ +
Sbjct: 227 TFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAE 286

Query: 225 AEAAISEFQGKTFMGRSLRV 239
              AI+   G++  GR++RV
Sbjct: 287 MSDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of IVF0005726 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-17
Identity = 58/188 (30.85%), Postives = 94/188 (50.00%), Query Frame = 0


Query: 53  SQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IRN 112
           S +  V       E     +L   N+P+D   E +  +F+  G V+++   +YN+   R+
Sbjct: 37  SDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAG-VVEIAEVIYNRETDRS 96

Query: 113 RGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVAN 172
           RG  FVTM + EEA  A+  L  Y+ +GR L +N A  +      P      +  ++V N
Sbjct: 97  RGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGN 156

Query: 173 LPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKT 232
           LP++     L + F S  G VVSA+++      RS G+GFV   ++ +   AI+   G+T
Sbjct: 157 LPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQT 216

Query: 233 FMGRSLRV 239
             GR++RV
Sbjct: 217 LDGRAVRV 222

[Close]

BLAST of IVF0005726 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-16
Identity = 77/280 (27.50%), Postives = 135/280 (48.21%), Query Frame = 0


Query: 2   FAKSSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSS 61
           F  +S  +   F +S    S   LST    +  + ++ +   + V   A   ++      
Sbjct: 45  FKINSTKLKAHFPISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEE 104

Query: 62  PSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMG 121
             + E     RL   N+P+  T   +  +F + GTV +VE+ +Y+++  R+RG AFVTMG
Sbjct: 105 RVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEI-VYDRVTDRSRGFAFVTMG 164

Query: 122 SPEEALAALNNLESYEFEGRTLRLNYAKL----KKEKPSPPVKPKPVTF-----NLFVAN 181
           S EEA  A+   +  +  GRT+++N+ ++    ++E  S  ++     F      L+VAN
Sbjct: 165 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVAN 224

Query: 182 LPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKT 241
           L +   ++ LR+ F    G  +SA++I+  +  RS G+GF+ F + +   +A+       
Sbjct: 225 LSWALTSQGLRDAFADQPG-FMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVE 284

Query: 242 FMGRSLR--VARSKQFVKLPSEEKSQSEDASTDGVELANA 269
             GR LR  VA  K  V  P   ++  E+ S D  EL ++
Sbjct: 285 LEGRPLRLNVAGQKAPVSSPPVVETSPENDS-DNSELLSS 321

[Close]

BLAST of IVF0005726 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.3e-142
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI
Sbjct: 35  SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD
Sbjct: 155 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 273
           KLPSEEKSQSEDASTDGVELANAAAEV
Sbjct: 275 KLPSEEKSQSEDASTDGVELANAAAEV 301

[Close]

BLAST of IVF0005726 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.3e-142
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI
Sbjct: 35  SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD
Sbjct: 155 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 273
           KLPSEEKSQSEDASTDGVELANAAAEV
Sbjct: 275 KLPSEEKSQSEDASTDGVELANAAAEV 301

[Close]

BLAST of IVF0005726 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133
Identity = 254/267 (95.13%), Postives = 260/267 (97.38%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SYPINGDFNLS+SRSSPSLLSTSI H+PLISI AKRTS FVFQFASTSQDEAV SSPSD 
Sbjct: 35  SYPINGDFNLSISRSSPSLLSTSISHSPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDT 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFS+TRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFD
Sbjct: 155 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIF+ENPRRSSGYGFVAFK KKDAEAAISEFQGKTFMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 273
           KLPSEEK QSEDASTDGVELANAAAEV
Sbjct: 275 KLPSEEKPQSEDASTDGVELANAAAEV 300

[Close]

BLAST of IVF0005726 vs. ExPASy TrEMBL
Match: A0A6J1FF97 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443545 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.4e-124
Identity = 237/267 (88.76%), Postives = 247/267 (92.51%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SY  NGD  LS+SRSS SL ST + HNPL SI AKRT KFVFQ ASTSQD+AV+SS SD 
Sbjct: 35  SYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKFVFQLASTSQDDAVASSSSDA 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSR RLLAQNVPWDSTPEDIRSLFEKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AA+NNLESYEF GRTL+LNYAK+KKEKPSPPVKP PVTFNLFVANLPF+ARAKDLREFFD
Sbjct: 155 AAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFK KKDAEAAISEFQGK FMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 273
           KLPSEEKSQSED STDGVELA+AAAEV
Sbjct: 275 KLPSEEKSQSEDTSTDGVELASAAAEV 301

[Close]

BLAST of IVF0005726 vs. ExPASy TrEMBL
Match: A0A6J1IE80 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476441 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.0e-124
Identity = 235/267 (88.01%), Postives = 247/267 (92.51%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SY  NGD  LS+SRSS SL ST + HNPL SI AKRT KFVFQ ASTSQD+A++SS SD 
Sbjct: 35  SYSNNGDIKLSLSRSSSSLFSTPLGHNPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDA 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AA+NNLESYEF GRTL+LNYAK+KKEKPSPPVKP PVTFNLFVANLPF+ARAKDLREFFD
Sbjct: 155 AAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFK KKDAEAAISEFQGK FMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 273
           KLPSEE SQS+D STDGVELA+AAAEV
Sbjct: 275 KLPSEENSQSDDTSTDGVELASAAAEV 301

[Close]

BLAST of IVF0005726 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 507 bits (1306), Expect = 3.91e-180
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI
Sbjct: 35  SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD
Sbjct: 155 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 272
           KLPSEEKSQSEDASTDGVELANAAAEV
Sbjct: 275 KLPSEEKSQSEDASTDGVELANAAAEV 301

[Close]

BLAST of IVF0005726 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 484 bits (1247), Expect = 3.82e-171
Identity = 256/267 (95.88%), Postives = 259/267 (97.00%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SYPINGDFNLS+SRSSPSLLSTSI HNPLISI  KRTSKFVFQFASTSQDEAV+SSPSD 
Sbjct: 35  SYPINGDFNLSISRSSPSLLSTSIGHNPLISIRGKRTSKFVFQFASTSQDEAVASSPSDS 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFS+TRLLAQNVPW STPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSQTRLLAQNVPWSSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD
Sbjct: 155 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFK KKDAEAAISEFQGK FMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 272
           KLPSEEKSQSEDASTD VELANAAAEV
Sbjct: 275 KLPSEEKSQSEDASTDDVELANAAAEV 301

[Close]

BLAST of IVF0005726 vs. NCBI nr
Match: XP_004136268.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_002107 [Cucumis sativus])

HSP 1 Score: 479 bits (1232), Expect = 7.10e-169
Identity = 254/267 (95.13%), Postives = 260/267 (97.38%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SYPINGDFNLS+SRSSPSLLSTSI H+PLISI AKRTS FVFQFASTSQDEAV SSPSD 
Sbjct: 35  SYPINGDFNLSISRSSPSLLSTSISHSPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDT 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFS+TRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFD
Sbjct: 155 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIF+ENPRRSSGYGFVAFK KKDAEAAISEFQGKTFMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 272
           KLPSEEK QSEDASTDGVELANAAAEV
Sbjct: 275 KLPSEEKPQSEDASTDGVELANAAAEV 300

[Close]

BLAST of IVF0005726 vs. NCBI nr
Match: XP_022937168.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449 bits (1154), Expect = 5.57e-157
Identity = 237/267 (88.76%), Postives = 247/267 (92.51%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SY  NGD  LS+SRSS SL ST + HNPL SI AKRT KFVFQ ASTSQD+AV+SS SD 
Sbjct: 35  SYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKFVFQLASTSQDDAVASSSSDA 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSR RLLAQNVPWDSTPEDIRSLFEKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AA+NNLESYEF GRTL+LNYAK+KKEKPSPPVKP PVTFNLFVANLPF+ARAKDLREFFD
Sbjct: 155 AAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFK KKDAEAAISEFQGK FMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 272
           KLPSEEKSQSED STDGVELA+AAAEV
Sbjct: 275 KLPSEEKSQSEDTSTDGVELASAAAEV 301

[Close]

BLAST of IVF0005726 vs. NCBI nr
Match: KAG7024563.1 (RNA-binding protein CP33, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449 bits (1154), Expect = 5.57e-157
Identity = 237/267 (88.76%), Postives = 247/267 (92.51%), Query Frame = 0


Query: 6   SYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 65
           SY  NGD  LS+SRSS SL ST + HNPL SI AKRT KFVFQ ASTSQD+AV+SS SD 
Sbjct: 35  SYSNNGDIKLSLSRSSSSLFSTPLGHNPLASIRAKRTRKFVFQLASTSQDDAVASSSSDA 94

Query: 66  EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL 125
           EEFSR RLLAQNVPWDSTPEDIRSLFEKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEAL
Sbjct: 95  EEFSRNRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEAL 154

Query: 126 AALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFD 185
           AA+NNLESYEF GRTL+LNYAK+KKEKPSPPVKP PVTFNLFVANLPF+ARAKDLREFFD
Sbjct: 155 AAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFD 214

Query: 186 SGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFV 245
           SGSGNVVSAQIIFHENPRRSSGYGFVAFK KKDAEAAISEFQGK FMGRSLRVARSKQFV
Sbjct: 215 SGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFV 274

Query: 246 KLPSEEKSQSEDASTDGVELANAAAEV 272
           KLPSEEKSQSED STDGVELA+AAAEV
Sbjct: 275 KLPSEEKSQSEDTSTDGVELASAAAEV 301

[Close]

BLAST of IVF0005726 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-71
Identity = 147/272 (54.04%), Postives = 193/272 (70.96%), Query Frame = 0


Query: 10  NGDFNLSVSRSSPSLLSTSIC----HNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 69
           N + N++ +  S SL + S+C    H      +  ++      F++T+Q+  + SS S  
Sbjct: 22  NPNPNVAFTNHSLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSS 81

Query: 70  -------EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTM 129
                  EE S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M
Sbjct: 82  SAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEM 141

Query: 130 GSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFEAR 189
            SPEEA  AL +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL FEAR
Sbjct: 142 ASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEAR 201

Query: 190 AKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSL 249
           AK L+EFFD+ +GNVVS ++IFHENPRRSSGYGFV+FK KK AEAA+ EFQGK F+GR +
Sbjct: 202 AKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPI 261

Query: 250 RVARSKQFVKL-------PSEEKSQSEDASTD 262
           R+A+SKQFVKL       P EE+++ E + ++
Sbjct: 262 RLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSE 293

[Close]

BLAST of IVF0005726 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 131/202 (64.85%), Postives = 163/202 (80.69%), Query Frame = 0


Query: 69  SRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL 128
           S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  AL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 129 NNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFEARAKDLREFFDS 188
            +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL FEARAK L+EFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 189 GSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVK 248
            +GNVVS ++IFHENPRRSSGYGFV+FK KK AEAA+ EFQGK F+GR +R+A+SKQFVK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 249 L-------PSEEKSQSEDASTD 262
           L       P EE+++ E + ++
Sbjct: 212 LQAKEGLQPPEEEAEEEPSQSE 233

[Close]

BLAST of IVF0005726 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-30
Identity = 89/255 (34.90%), Postives = 135/255 (52.94%), Query Frame = 0


Query: 23  SLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDS 82
           SL S S     L+S++     K       TSQ+E    + +      + +L   N+PW  
Sbjct: 50  SLRSGSDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQN---SNLKRKLFVFNLPWSM 109

Query: 83  TPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLR 142
           +  DI  LF + GTV +VE+      +NRG AFVTM S EEA AA++  ++++  GR + 
Sbjct: 110 SVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIIS 169

Query: 143 LNYA-KLKKEKPS-----PPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQI 202
           +++A + KK  P      P   P      L+V+NL ++AR+  LRE F +   N VSA++
Sbjct: 170 VSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARV 229

Query: 203 IFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSE 262
           +F +   RSSGYGFV+F  +++AE AI++  GK  MGR +        +K      S+SE
Sbjct: 230 VFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPIT-------LKFSLRSASESE 289

Query: 263 DASTDGVELANAAAE 272
           D   D VE  NA+ +
Sbjct: 290 DG--DSVEANNASED 292

[Close]

BLAST of IVF0005726 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-22
Identity = 82/281 (29.18%), Postives = 145/281 (51.60%), Query Frame = 0


Query: 30  CHNPLISIMAKRTSKFVFQF---ASTSQDEAVSS-------------SPSDIEEFSRT-- 89
           C NPLI     R  +F       AS++ DE  +S                ++EE  +T  
Sbjct: 51  CPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQ 110

Query: 90  ------RLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEE 149
                 RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVTMGS EE
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEE 170

Query: 150 ALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFN---------LFVANLPFE 209
           A  A+    S +  GRT+++N+ ++ +   +  ++ K    N         ++  NL + 
Sbjct: 171 AKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWN 230

Query: 210 ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGR 269
             ++ L++ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G    GR
Sbjct: 231 LTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 290

Query: 270 SLRV----ARSKQFVKLPSEEKSQSEDASTDGVE-LANAAA 271
           +LR+     R K  V  PS E+ ++E+AS +  E L+N +A
Sbjct: 291 ALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of IVF0005726 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-17
Identity = 69/238 (28.99%), Postives = 117/238 (49.16%), Query Frame = 0


Query: 13  FNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTR 72
           FN S  +  P L+S+  C      +    T K         + +  +S+  D      T+
Sbjct: 34  FNFSTPK--PLLISSRSCSRRFRVLSETITVKL-----EEEEKDDGASAVLDPPAAVNTK 93

Query: 73  LLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALAALNN 132
           L   N+P++     +  + + +     VE+ +YN+   ++RG AFVTM + E+    ++N
Sbjct: 94  LYFGNLPYNVDSATLAQIIQDFANPELVEV-LYNRDTGQSRGFAFVTMSNVEDCNIIIDN 153

Query: 133 LESYEFEGRTLRLNYAKLKKEKPSPPVKP--KPVTFNLFVANLPFEARAKDLREFFDSGS 192
           L+  E+ GR L++N+A    +KP P  +P        LFV NL +   ++ L   F    
Sbjct: 154 LDGTEYLGRALKVNFA----DKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE-C 213

Query: 193 GNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRV--ARSKQF 245
           G+VV A+++F  +  RS GYGFV + +K + E A+    G    GR++RV  A+ K+F
Sbjct: 214 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of IVF0005726 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	8.0e-21	29.18	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19682	2.6e-19	30.00	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	7.5e-19	30.50	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.8e-17	30.85	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19684	5.9e-16	27.50	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of IVF0005726 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBD1	3.3e-142	100.00	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	3.3e-142	100.00	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A0A0LEN0	1.6e-133	95.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
A0A6J1FF97	1.4e-124	88.76	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IE80	4.0e-124	88.01	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476...	[more]

BLAST of IVF0005726 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466190.1	3.91e-180	100.00	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
XP_038897887.1	3.82e-171	95.88	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_004136268.1	7.10e-169	95.13	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetic...	[more]
XP_022937168.1	5.57e-157	88.76	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 ...	[more]
KAG7024563.1	5.57e-157	88.76	RNA-binding protein CP33, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of IVF0005726 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	1.3e-71	54.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.1e-68	64.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	1.1e-30	34.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	5.7e-22	29.18	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	2.5e-17	28.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 165..239 e-value: 1.9E-20 score: 83.9 coord: 72..144 e-value: 8.0E-17 score: 71.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 76..142 e-value: 4.0E-14 score: 52.2 coord: 166..237 e-value: 4.5E-17 score: 61.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 71..148 score: 16.84124
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 164..243 score: 17.915731
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 38..151 e-value: 1.8E-21 score: 78.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 152..264 e-value: 6.2E-23 score: 83.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..272
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 9..262
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 9..262
None	No IPR available	CDD	cd00590	RRM_SF	coord: 77..144 e-value: 4.94445E-18 score: 74.2637
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 71..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005726.1	IVF0005726.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding