Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCCAACCTTTTGAATCAGTAGTTGCATCACACATTCCCAATGGATTCGTTTTTGCATAGTTCACATCTCATACAATTGATACAAAAATAAAAAATAAATCAAAGGAACAAAAAGAAAAGCATATGATTAGATAATTTGATCTAATGTCTAAAGAAAATGGGTCCACCTAATACCCGTTCCCAAAGTATATCATCGACTCGAAACATTGGTGATAAGATACGATTCCAATGGCTGCTTCTTTTTCTCCTACAACACCAATCTCACGCCCAAGCATTAGAACCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACAATTTGAGCACTCGTTCACAACCCCGGAGCATCGTGAAATGCGAATCCAGTGCATCGGCAGCAGACGGCCAGACGCCGCCGGCAAAAAGTCAGAAACTCGAGATCGGCTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGTGACGTCGGCAGGTGAGTGCCCAATTGTCATTCGTCCTCTGTCTTTGCCATTTCATCGAACACGTTACGTGCATCGTTTTTTTTTTTTTTATAAAAAAAACTAATTACTGTCTGTTCCGTTGCTTTAACGTGTGTGATTGAACAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAATTTGTCCGGAGGCTCTCAATTTGAAGGTTCCGAGCTTCCAAATTCACCTTTCATGGCGACTTCGTTGGAATGCGGCGTGTGTTTGAATCCGTTTGTAAAAAATCATTCGGTTATCGTTGCATGTTGTTCAGATCATCCTCCGCGTCTCGATCTTGATACAGCAGATCAAATGCAACTTAATTAACCATGGATTTAGGAGTCTTGTATATTTTATTGCAAATCTGTTATGCATCTTCGTGGAATTTACGATGAAACTCGAACCCCCAATCCCGTTTGATTGTTTCTTTACTGCATGTTTCCATTGTATTTTAAGCATGGATGTATATTTTGGTTTAAGATATATTTCGTGCAGGTTGTGAGTTCGGCTCATTTGACCTGTGCAGGACAGCTAGGTTGGTTCAAATTAGTAAACAATTAAAAATAACCGTCGAGC
mRNA sequence
CCTCCCAACCTTTTGAATCAGTAGTTGCATCACACATTCCCAATGGATTCGTTTTTGCATAGTTCACATCTCATACAATTGATACAAAAATAAAAAATAAATCAAAGGAACAAAAAGAAAAGCATATGATTAGATAATTTGATCTAATGTCTAAAGAAAATGGGTCCACCTAATACCCGTTCCCAAAGTATATCATCGACTCGAAACATTGGTGATAAGATACGATTCCAATGGCTGCTTCTTTTTCTCCTACAACACCAATCTCACGCCCAAGCATTAGAACCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACAATTTGAGCACTCGTTCACAACCCCGGAGCATCGTGAAATGCGAATCCAGTGCATCGGCAGCAGACGGCCAGACGCCGCCGGCAAAAAGTCAGAAACTCGAGATCGGCTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGTGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAATTTGTCCGGAGGCTCTCAATTTGAAGGTTCCGAGCTTCCAAATTCACCTTTCATGGCGACTTCGTTGGAATGCGGCGTGTGTTTGAATCCGTTTGTAAAAAATCATTCGGTTATCGTTGCATGTTGTTCAGATCATCCTCCGCGTCTCGATCTTGATACAGCAGATCAAATGCAACTTAATTAACCATGGATTTAGGAGTCTTGTATATTTTATTGCAAATCTGTTATGCATCTTCGTGGAATTTACGATGAAACTCGAACCCCCAATCCCGTTTGATTGTTTCTTTACTGCATGTTTCCATTGTATTTTAAGCATGGATGTATATTTTGGTTTAAGATATATTTCGTGCAGGTTGTGAGTTCGGCTCATTTGACCTGTGCAGGACAGCTAGGTTGGTTCAAATTAGTAAACAATTAAAAATAACCGTCGAGC
Coding sequence (CDS)
ATGGCTGCTTCTTTTTCTCCTACAACACCAATCTCACGCCCAAGCATTAGAACCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACAATTTGAGCACTCGTTCACAACCCCGGAGCATCGTGAAATGCGAATCCAGTGCATCGGCAGCAGACGGCCAGACGCCGCCGGCAAAAAGTCAGAAACTCGAGATCGGCTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGTGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG
Protein sequence
MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ
Homology
BLAST of IVF0005713 vs. ExPASy TrEMBL
Match:
A0A5A7T9E1 (Chlororespiratory reduction 42 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00650 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ
Sbjct: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
Query: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
Query: 121 IDGRYFRALELDQ 134
IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133
BLAST of IVF0005713 vs. ExPASy TrEMBL
Match:
A0A1S3BMX2 (uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ
Sbjct: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
Query: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
Query: 121 IDGRYFRALELDQ 134
IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133
BLAST of IVF0005713 vs. ExPASy TrEMBL
Match:
A0A0A0L1Q6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
MAA PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQT P KSQ
Sbjct: 1 MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
Query: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
Query: 121 IDGRYFRALELDQ 134
IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133
BLAST of IVF0005713 vs. ExPASy TrEMBL
Match:
A0A6J1FYJ7 (uncharacterized protein LOC111448751 OS=Cucurbita moschata OX=3662 GN=LOC111448751 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 115/135 (85.19%), Postives = 120/135 (88.89%), Query Frame = 0
Query: 1 MAASFSPTTPISRPS--IRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60
MA S S T I RPS I ++SISSFNVSN+LSTRSQPRS+VKCESSASAAD TPPAK
Sbjct: 1 MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
Query: 61 SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61 SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
Query: 121 YLIDGRYFRALELDQ 134
YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134
BLAST of IVF0005713 vs. ExPASy TrEMBL
Match:
A0A6J1JEC4 (uncharacterized protein LOC111483753 OS=Cucurbita maxima OX=3661 GN=LOC111483753 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 114/135 (84.44%), Postives = 119/135 (88.15%), Query Frame = 0
Query: 1 MAASFSPTTPISRPS--IRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60
MA S S T I RPS I + SISSFN+SN+LSTRSQPRS VKCESSASAAD TPPAK
Sbjct: 1 MATSLSSATAIPRPSIGIGIVNSISSFNISNSLSTRSQPRSFVKCESSASAAD-PTPPAK 60
Query: 61 SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61 SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
Query: 121 YLIDGRYFRALELDQ 134
YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134
BLAST of IVF0005713 vs. NCBI nr
Match:
XP_008449832.1 (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo] >KAA0040074.1 chlororespiratory reduction 42 [Cucumis melo var. makuwa] >TYK21698.1 chlororespiratory reduction 42 [Cucumis melo var. makuwa])
HSP 1 Score: 253 bits (645), Expect = 2.08e-84
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ
Sbjct: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
Query: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
Query: 121 IDGRYFRALELDQ 133
IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133
BLAST of IVF0005713 vs. NCBI nr
Match:
XP_004142251.1 (uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hypothetical protein Csa_017922 [Cucumis sativus])
HSP 1 Score: 231 bits (588), Expect = 1.02e-75
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
MAA PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQT P KSQ
Sbjct: 1 MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
Query: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
Query: 121 IDGRYFRALELDQ 133
IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133
BLAST of IVF0005713 vs. NCBI nr
Match:
XP_038900819.1 (uncharacterized protein LOC120087887 [Benincasa hispida])
HSP 1 Score: 211 bits (538), Expect = 4.15e-68
Identity = 114/133 (85.71%), Postives = 121/133 (90.98%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60
MAAS SP T ISRPSI L+SISS NVS++LS RSQPR +VKCESSASAAD QTPP S+
Sbjct: 1 MAASLSPATAISRPSITILSSISSLNVSSSLSNRSQPRRLVKCESSASAAD-QTPPENSR 60
Query: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61 KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
Query: 121 IDGRYFRALELDQ 133
IDG+YFR L+LDQ
Sbjct: 121 IDGKYFRPLKLDQ 132
BLAST of IVF0005713 vs. NCBI nr
Match:
KAG6570328.1 (hypothetical protein SDJN03_29243, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010222.1 hypothetical protein SDJN02_27014, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 210 bits (534), Expect = 1.80e-67
Identity = 116/135 (85.93%), Postives = 121/135 (89.63%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIR--TLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60
MA S S T I RPSI T++SISSFNVSN+LSTRSQPRS+VKCESSASAAD TPPAK
Sbjct: 1 MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
Query: 61 SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61 SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
Query: 121 YLIDGRYFRALELDQ 133
YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134
BLAST of IVF0005713 vs. NCBI nr
Match:
XP_023513105.1 (uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 209 bits (531), Expect = 5.16e-67
Identity = 115/135 (85.19%), Postives = 121/135 (89.63%), Query Frame = 0
Query: 1 MAASFSPTTPISRPSIRT--LTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60
MA S S T I RPSI ++SISSFNVSN+LSTRSQPRS+VKCESSASAAD TPPAK
Sbjct: 1 MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
Query: 61 SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61 SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
Query: 121 YLIDGRYFRALELDQ 133
YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134
BLAST of IVF0005713 vs. TAIR 10
Match:
AT5G20935.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3148 (InterPro:IPR021495); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 131.0 bits (328), Expect = 7.3e-31
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 38 RSIVKCESSASAADGQTPPAKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGD 97
R V+C A+ A P KL++GSP+I++EAPK+IKTAAS+PCLR NSG++ PGD
Sbjct: 14 RVSVRCCEIANEA-----PRPKSKLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGD 73
Query: 98 VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
VGRIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 74 VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T9E1 | 3.9e-64 | 100.00 | Chlororespiratory reduction 42 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A1S3BMX2 | 3.9e-64 | 100.00 | uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=... | [more] |
| A0A0A0L1Q6 | 1.6e-57 | 91.73 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1 | [more] |
| A0A6J1FYJ7 | 1.4e-50 | 85.19 | uncharacterized protein LOC111448751 OS=Cucurbita moschata OX=3662 GN=LOC1114487... | [more] |
| A0A6J1JEC4 | 1.9e-50 | 84.44 | uncharacterized protein LOC111483753 OS=Cucurbita maxima OX=3661 GN=LOC111483753... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008449832.1 | 2.08e-84 | 100.00 | PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo] >KAA0040074.1 chl... | [more] |
| XP_004142251.1 | 1.02e-75 | 91.73 | uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hypothetical ... | [more] |
| XP_038900819.1 | 4.15e-68 | 85.71 | uncharacterized protein LOC120087887 [Benincasa hispida] | [more] |
| KAG6570328.1 | 1.80e-67 | 85.93 | hypothetical protein SDJN03_29243, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023513105.1 | 5.16e-67 | 85.19 | uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G20935.1 | 7.3e-31 | 63.54 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3148... | [more] |
