Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAATAATTTCATCTCTAACAACCTTTTGATAGACCCTCCTCTCACAAATAACAAATTCACCTGGTCAAACTTAATAACTCCTCCTATCTTTTCCCGTATTGATAGATTTCTTTACAACTCTAACTGAGAAGTCCTATTCAAACCTCACACCACCAGAACCCTTTCTAGACCTACTTCAGATCACTTCCCTTTGACTTGTGAAGACTCCTCCCTCAGCTAGGGTCCTGCTCCGTTTAGGCTAAATTCTATAGCTCTAAACGACCTAGAATTCAAAAGAAATATGGAAAGATGGTGGGAAGACTCCAATCAAATCGGCCACCCCGGATACTTATTCATTCAAAAGCTAAAATCTCTTGCAAACCACATCAAACCTTGGTAGAAGGGAAAATTCTAATCCCTCAAATCTATAAAAGAAAATATAATAAAGGAAGTGGATAGCATTGACAAAAAGGAGTTGGATTCTTTTCTGACTCAAAAGGAGAATGATCGTAGACTTTCTCTGAAAAATGATCTCAGTCAATTATCCCTCAAAGAATCTCAATTCTGGTACCAAAGAGCAAAAAAGCTTTGGCTCAAGGAGGGAGATGAAAACTCATCCTTCTTCCATAGAATTTGTTCTTCGAGACAAAAGAGAAATTTCATACATGAAATTCTGGACGAAGATGGATCGACTCAGAACACGAACAACAACATCTCAAGTGCCTTTATTAAGTACTTCTCCTCCATATACAAAGGCTCCAATAAAAGGGAAACTTTCTTTATTGAAAATTTCAACTGGAATCCCATTGACTATGCAAAGAGGTCTCATCTTTGTGCCCCCTTCACAGAAGAAGAGATAAAAGGGGTGATCAACTCCTTCGATGGAAAGAAAGCTCCCGGACCAGACGAGTTTCCTCAAACCTTCTTCTCAAATCTGATATTTTGGACATCTTTAAGGACTTCTTCGAGAAAGGTGTTATCAAGAAGAATATGA
mRNA sequence
ATGTTGAATAATTTCATCTCTAACAACCTTTTGATAGACCCTCCTCTCACAAATAACAAATTCACCTGGTCAAACTTAATAACTCCTCCTATCTTTTCCCAAGTCCTATTCAAACCTCACACCACCAGAACCCTTTCTAGACCTACTTCAGATCACTTCCCTTTGACTTCTCTAAACGACCTAGAATTCAAAAGAAATATGGAAAGATGGTGGGAAGACTCCAATCAAATCGGCCACCCCGGATACTTATTCATTCAAAAGCTAAAATCTCTTGCAAACCACATCAAACCTTGCATTGACAAAAAGGAGTTGGATTCTTTTCTGACTCAAAAGGAGAATGATCGTAGACTTTCTCTGAAAAATGATCTCAGTCAATTATCCCTCAAAGAATCTCAATTCTGGTACCAAAGAGCAAAAAAGCTTTGGCTCAAGGAGGGAGATGAAAACTCATCCTTCTTCCATAGAATTTGTTCTTCGAGACAAAAGAGAAATTTCATACATGAAATTCTGGACGAAGATGGATCGACTCAGAACACGAACAACAACATCTCAAGTGCCTTTATTAAGTACTTCTCCTCCATATACAAAGGCTCCAATAAAAGGGAAACTTTCTTTATTGAAAATTTCAACTGGAATCCCATTGACTATGCAAAGAGGTCTCATCTTTGTGCCCCCTTCACAGAAGAAGAGATAAAAGGGGTGATCAACTCCTTCGATGGAAAGAAAGCTCCCGGACCAGACGAGTTTCCTCAAACCTTCTTCTCAAATCTGATATTTTGGACATCTTTAAGGACTTCTTCGAGAAAGGTGTTATCAAGAAGAATATGA
Coding sequence (CDS)
ATGTTGAATAATTTCATCTCTAACAACCTTTTGATAGACCCTCCTCTCACAAATAACAAATTCACCTGGTCAAACTTAATAACTCCTCCTATCTTTTCCCAAGTCCTATTCAAACCTCACACCACCAGAACCCTTTCTAGACCTACTTCAGATCACTTCCCTTTGACTTCTCTAAACGACCTAGAATTCAAAAGAAATATGGAAAGATGGTGGGAAGACTCCAATCAAATCGGCCACCCCGGATACTTATTCATTCAAAAGCTAAAATCTCTTGCAAACCACATCAAACCTTGCATTGACAAAAAGGAGTTGGATTCTTTTCTGACTCAAAAGGAGAATGATCGTAGACTTTCTCTGAAAAATGATCTCAGTCAATTATCCCTCAAAGAATCTCAATTCTGGTACCAAAGAGCAAAAAAGCTTTGGCTCAAGGAGGGAGATGAAAACTCATCCTTCTTCCATAGAATTTGTTCTTCGAGACAAAAGAGAAATTTCATACATGAAATTCTGGACGAAGATGGATCGACTCAGAACACGAACAACAACATCTCAAGTGCCTTTATTAAGTACTTCTCCTCCATATACAAAGGCTCCAATAAAAGGGAAACTTTCTTTATTGAAAATTTCAACTGGAATCCCATTGACTATGCAAAGAGGTCTCATCTTTGTGCCCCCTTCACAGAAGAAGAGATAAAAGGGGTGATCAACTCCTTCGATGGAAAGAAAGCTCCCGGACCAGACGAGTTTCCTCAAACCTTCTTCTCAAATCTGATATTTTGGACATCTTTAAGGACTTCTTCGAGAAAGGTGTTATCAAGAAGAATATGA
Protein sequence
MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQVLFKPHTTRTLSRPTSDHFPLTSLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLKSLANHIKPCIDKKELDSFLTQKENDRRLSLKNDLSQLSLKESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFIKYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDEFPQTFFSNLIFWTSLRTSSRKVLSRRI
Homology
BLAST of IVF0005542 vs. ExPASy TrEMBL
Match:
A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)
HSP 1 Score: 370.9 bits (951), Expect = 4.5e-99
Identity = 196/315 (62.22%), Postives = 225/315 (71.43%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
MLNNFISNNLLIDPPLTNN+FTWSNL PP FS++ LF PHTTRTL R T
Sbjct: 889 MLNNFISNNLLIDPPLTNNRFTWSNLRNPPTFSRIDRFLYNSSWENLFSPHTTRTLPRST 948
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +L+D EFKRNM RWWE+S Q G+PG+ FIQ+LK
Sbjct: 949 SDHFPLVCEDSNPKLSWGPIPFRLNSITLSDPEFKRNMGRWWENSIQAGYPGFSFIQRLK 1008
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 1009 SLANFIKPWQKEKLHSLTYAKEAIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 1068
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+GS QNTNN+IS+AFI
Sbjct: 1069 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGSIQNTNNSISTAFI 1128
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
K+FS IY+ S K + FIEN +WNPI ++ SHLCAPF E EIKGVINSFDGKK PGPD
Sbjct: 1129 KFFSRIYRSSTKSDPLFIENLDWNPIASSEWSHLCAPFLEGEIKGVINSFDGKKTPGPDG 1188
BLAST of IVF0005542 vs. ExPASy TrEMBL
Match:
A0A5D3C3M3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003160 PE=4 SV=1)
HSP 1 Score: 366.3 bits (939), Expect = 1.1e-97
Identity = 194/316 (61.39%), Postives = 222/316 (70.25%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
MLNNFISNNLLIDPPLTNN++TWSNL PP FS + LF PH TRTLSRPT
Sbjct: 601 MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWETLFNPHITRTLSRPT 660
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +LND +FKRNMERWWE S Q GHPG+ FI++LK
Sbjct: 661 SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPKFKRNMERWWELSVQNGHPGFSFIRRLK 720
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDK ELD+ L+Q+E++RRL+LK +LS LSL
Sbjct: 721 SLANLIKPWQKEKFHSLTSAKENIIREVDSIDKNELDTPLSQEESNRRLALKAELSDLSL 780
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 781 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 840
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
+FSSIY+ S K++ FIEN WNPIDY+ S LCAPF EEEIKGVI SFDG KAPGPD
Sbjct: 841 NHFSSIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKAPGPDG 900
BLAST of IVF0005542 vs. ExPASy TrEMBL
Match:
A0A5D3BT10 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00220 PE=4 SV=1)
HSP 1 Score: 364.8 bits (935), Expect = 3.2e-97
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
MLNNFISNNLLIDPPL+NN++TWSNL PP FS++ LF PH TRTL RPT
Sbjct: 17 MLNNFISNNLLIDPPLSNNRYTWSNLRIPPTFSRLDRFLYNSNWEFLFNPHITRTLPRPT 76
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +LND EFKRNM+RWW+ S Q GHP + FIQ+LK
Sbjct: 77 SDHFPLVCEDSSPTVRWGPAPFRLNSIALNDPEFKRNMDRWWDLSAQKGHPDFAFIQRLK 136
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDKKELD+ L Q+++DRRL+LK +LS LSL
Sbjct: 137 SLANLIKPWQKEKFHSLTSAKDNIIREVDAIDKKELDTPLCQEDSDRRLALKAELSDLSL 196
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
YFS +Y+ S K++ FI+N WNPIDY++ S LCAPF EEEIKGVINSF+G KAPGPD
Sbjct: 257 NYFSRLYRSSTKKDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKAPGPDG 316
BLAST of IVF0005542 vs. ExPASy TrEMBL
Match:
A0A5D3BUZ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00050 PE=4 SV=1)
HSP 1 Score: 362.8 bits (930), Expect = 1.2e-96
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
MLNNFI+NNLLIDPPL NN+FTWSNL PP FS++ LF PHTTRTL R T
Sbjct: 1 MLNNFITNNLLIDPPLINNRFTWSNLRNPPTFSRIDRFLYNSTWENLFSPHTTRTLPRST 60
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +L+D EFKRNM RWWE+S Q GHPG+ FIQ+LK
Sbjct: 61 SDHFPLVCEDSNPKLSWGPVPFRLNSIALSDPEFKRNMGRWWENSIQDGHPGFSFIQRLK 120
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN I P IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 121 SLANFINPWQKEKLHSLTYAKDNIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 180
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+G QNTNN IS+AFI
Sbjct: 181 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGLIQNTNNGISTAFI 240
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
K+FS IY+ S K + FI+N +WNPI++++ HLCAPF E EIKGVINS DGKK PGPD
Sbjct: 241 KFFSRIYRSSTKSDPLFIDNLDWNPIEHSEWPHLCAPFLEGEIKGVINSLDGKKTPGPDG 300
BLAST of IVF0005542 vs. ExPASy TrEMBL
Match:
A0A5A7TDG1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001050 PE=4 SV=1)
HSP 1 Score: 362.5 bits (929), Expect = 1.6e-96
Identity = 191/316 (60.44%), Postives = 221/316 (69.94%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
MLN+FISNNLLIDPPLTNN++TWSNL PP FS ++LF PH TRTL RPT
Sbjct: 801 MLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHITRTLPRPT 860
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +LND EFKRNMERWWE S Q GHPG+ FIQ+LK
Sbjct: 861 SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGFFFIQRLK 920
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDK ELD+ L+ +E++RRL+LK +L+ LSL
Sbjct: 921 SLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKAELNDLSL 980
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 981 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 1040
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
+FS IY+ S K++ FIEN WNPIDY+ S LCAPF+EEEIKGVI SFDG KAPGPD
Sbjct: 1041 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFSEEEIKGVIKSFDGNKAPGPDG 1100
BLAST of IVF0005542 vs. NCBI nr
Match:
KAA0034017.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK02813.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 363 bits (932), Expect = 1.20e-117
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
MLNNFISNNLLIDPPL+NN++TWSNL PP FS++ LF PH TRTL RPT
Sbjct: 17 MLNNFISNNLLIDPPLSNNRYTWSNLRIPPTFSRLDRFLYNSNWEFLFNPHITRTLPRPT 76
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +LND EFKRNM+RWW+ S Q GHP + FIQ+LK
Sbjct: 77 SDHFPLVCEDSSPTVRWGPAPFRLNSIALNDPEFKRNMDRWWDLSAQKGHPDFAFIQRLK 136
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDKKELD+ L Q+++DRRL+LK +LS LSL
Sbjct: 137 SLANLIKPWQKEKFHSLTSAKDNIIREVDAIDKKELDTPLCQEDSDRRLALKAELSDLSL 196
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
YFS +Y+ S K++ FI+N WNPIDY++ S LCAPF EEEIKGVINSF+G KAPGPD
Sbjct: 257 NYFSRLYRSSTKKDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKAPGPDG 316
BLAST of IVF0005542 vs. NCBI nr
Match:
KAA0037445.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01919.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 361 bits (927), Expect = 1.25e-115
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
MLNNFI+NNLLIDPPL NN+FTWSNL PP FS++ LF PHTTRTL R T
Sbjct: 1 MLNNFITNNLLIDPPLINNRFTWSNLRNPPTFSRIDRFLYNSTWENLFSPHTTRTLPRST 60
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +L+D EFKRNM RWWE+S Q GHPG+ FIQ+LK
Sbjct: 61 SDHFPLVCEDSNPKLSWGPVPFRLNSIALSDPEFKRNMGRWWENSIQDGHPGFSFIQRLK 120
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN I P IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 121 SLANFINPWQKEKLHSLTYAKDNIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 180
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+G QNTNN IS+AFI
Sbjct: 181 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGLIQNTNNGISTAFI 240
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
K+FS IY+ S K + FI+N +WNPI++++ HLCAPF E EIKGVINS DGKK PGPD
Sbjct: 241 KFFSRIYRSSTKSDPLFIDNLDWNPIEHSEWPHLCAPFLEGEIKGVINSLDGKKTPGPDG 300
BLAST of IVF0005542 vs. NCBI nr
Match:
KAA0058104.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 356 bits (914), Expect = 3.02e-115
Identity = 189/316 (59.81%), Postives = 219/316 (69.30%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
MLNNFISNNLLIDPPLTNN++TWSNL PP FS ++LF PH TRTL R T
Sbjct: 17 MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSHLDRFLYNSSWEILFNPHITRTLPRTT 76
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +LND EFKRNMERWWE S Q GHPG+ FIQ+LK
Sbjct: 77 SDHFPLVCEDSTSTLRWGPAPFRLNSITLNDPEFKRNMERWWELSIQNGHPGFSFIQRLK 136
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDK ELD+ L+Q+E++RRL+LK +L+ LSL
Sbjct: 137 SLANLIKPWQKEKFHSLTTAKENIIREVDAIDKNELDTPLSQEESNRRLALKAELNDLSL 196
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFW+QRAKKLW+KEGDEN +FFHRICSSRQKRN IHEI +E+GS QNTNNNIS AF+
Sbjct: 197 KESQFWFQRAKKLWIKEGDENYAFFHRICSSRQKRNLIHEIQNEEGSIQNTNNNISLAFV 256
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
+FS IY+ S K++ FIEN WNPIDY+ S LCAPF EEEIKGVI SFDG KAPGPD
Sbjct: 257 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKAPGPDG 316
BLAST of IVF0005542 vs. NCBI nr
Match:
TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 369 bits (948), Expect = 2.14e-113
Identity = 196/315 (62.22%), Postives = 225/315 (71.43%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
MLNNFISNNLLIDPPLTNN+FTWSNL PP FS++ LF PHTTRTL R T
Sbjct: 889 MLNNFISNNLLIDPPLTNNRFTWSNLRNPPTFSRIDRFLYNSSWENLFSPHTTRTLPRST 948
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +L+D EFKRNM RWWE+S Q G+PG+ FIQ+LK
Sbjct: 949 SDHFPLVCEDSNPKLSWGPIPFRLNSITLSDPEFKRNMGRWWENSIQAGYPGFSFIQRLK 1008
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 1009 SLANFIKPWQKEKLHSLTYAKEAIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 1068
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+GS QNTNN+IS+AFI
Sbjct: 1069 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGSIQNTNNSISTAFI 1128
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 263
K+FS IY+ S K + FIEN +WNPI ++ SHLCAPF E EIKGVINSFDGKK PGPD
Sbjct: 1129 KFFSRIYRSSTKSDPLFIENLDWNPIASSEWSHLCAPFLEGEIKGVINSFDGKKTPGPDG 1188
BLAST of IVF0005542 vs. NCBI nr
Match:
KAA0063661.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 349 bits (896), Expect = 2.63e-113
Identity = 185/316 (58.54%), Postives = 217/316 (68.67%), Query Frame = 0
Query: 1 MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
MLNNFISNN LIDPPL+NN++TWSNL P FS +VLF H TRTL RPT
Sbjct: 17 MLNNFISNNSLIDPPLSNNRYTWSNLRISPTFSRLDRFLYNPKWEVLFNSHITRTLPRPT 76
Query: 61 SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
SDHFPL +LND EFKRNMERWW+ S Q GH G+ FIQ+LK
Sbjct: 77 SDHFPLACEDSSPTVRWGPAPFRLNSIALNDPEFKRNMERWWDLSAQKGHLGFAFIQRLK 136
Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
SLAN IKP IDKKELD+ L Q+++DRRL+LK +L+ SL
Sbjct: 137 SLANLIKPWQKEKFHSLSSAKENIIKEVDAIDKKELDTLLCQEDSDRRLALKAELNDFSL 196
Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTN NIS AF+
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNIIHEIQDEEGSIQNTNINISLAFV 256
Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
YF+++Y+ S K + FI+N WNPIDY++ S LCAPF EEEIKGVINSF+G KAPGPD
Sbjct: 257 NYFTNLYRSSTKIDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKAPGPDG 316
BLAST of IVF0005542 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 53.9 bits (128), Expect = 2.3e-07
Identity = 36/130 (27.69%), Postives = 61/130 (46.92%), Query Frame = 0
Query: 133 FWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEI-LDEDGSTQNTNNNISSAFIKYF 192
F+ Q+++ WL++GD N+ FFH++ + Q +N I + +D+D +N + + Y+
Sbjct: 434 FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENV-TQVKEMIVAYY 493
Query: 193 -------SSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAP 252
S I + + I F N S L A +++EI + + KAP
Sbjct: 494 THLLGSDSDILTPDSVQRIKDIHPFRCND---TLASRLSALPSDKEITAAVFAMPRNKAP 553
Query: 253 GPDEFPQTFF 255
GPD F FF
Sbjct: 554 GPDSFTAEFF 559
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BLV7 | 4.5e-99 | 62.22 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3C3M3 | 1.1e-97 | 61.39 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3BT10 | 3.2e-97 | 60.13 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3BUZ3 | 1.2e-96 | 60.13 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TDG1 | 1.6e-96 | 60.44 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAA0034017.1 | 1.20e-117 | 60.13 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK028... | [more] |
KAA0037445.1 | 1.25e-115 | 60.13 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK019... | [more] |
KAA0058104.1 | 3.02e-115 | 59.81 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYJ99315.1 | 2.14e-113 | 62.22 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0063661.1 | 2.63e-113 | 58.54 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT1G43760.1 | 2.3e-07 | 27.69 | DNAse I-like superfamily protein | [more] |