IVF0005542 (gene) Melon (IVF77) v1

Overview


Name	IVF0005542
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr04: 5533558 .. 5534535 (+)
RNA-Seq Expression	IVF0005542
Synteny	IVF0005542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATAATTTCATCTCTAACAACCTTTTGATAGACCCTCCTCTCACAAATAACAAATTCACCTGGTCAAACTTAATAACTCCTCCTATCTTTTCCCGTATTGATAGATTTCTTTACAACTCTAACTGAGAAGTCCTATTCAAACCTCACACCACCAGAACCCTTTCTAGACCTACTTCAGATCACTTCCCTTTGACTTGTGAAGACTCCTCCCTCAGCTAGGGTCCTGCTCCGTTTAGGCTAAATTCTATAGCTCTAAACGACCTAGAATTCAAAAGAAATATGGAAAGATGGTGGGAAGACTCCAATCAAATCGGCCACCCCGGATACTTATTCATTCAAAAGCTAAAATCTCTTGCAAACCACATCAAACCTTGGTAGAAGGGAAAATTCTAATCCCTCAAATCTATAAAAGAAAATATAATAAAGGAAGTGGATAGCATTGACAAAAAGGAGTTGGATTCTTTTCTGACTCAAAAGGAGAATGATCGTAGACTTTCTCTGAAAAATGATCTCAGTCAATTATCCCTCAAAGAATCTCAATTCTGGTACCAAAGAGCAAAAAAGCTTTGGCTCAAGGAGGGAGATGAAAACTCATCCTTCTTCCATAGAATTTGTTCTTCGAGACAAAAGAGAAATTTCATACATGAAATTCTGGACGAAGATGGATCGACTCAGAACACGAACAACAACATCTCAAGTGCCTTTATTAAGTACTTCTCCTCCATATACAAAGGCTCCAATAAAAGGGAAACTTTCTTTATTGAAAATTTCAACTGGAATCCCATTGACTATGCAAAGAGGTCTCATCTTTGTGCCCCCTTCACAGAAGAAGAGATAAAAGGGGTGATCAACTCCTTCGATGGAAAGAAAGCTCCCGGACCAGACGAGTTTCCTCAAACCTTCTTCTCAAATCTGATATTTTGGACATCTTTAAGGACTTCTTCGAGAAAGGTGTTATCAAGAAGAATATGA

mRNA sequence

ATGTTGAATAATTTCATCTCTAACAACCTTTTGATAGACCCTCCTCTCACAAATAACAAATTCACCTGGTCAAACTTAATAACTCCTCCTATCTTTTCCCAAGTCCTATTCAAACCTCACACCACCAGAACCCTTTCTAGACCTACTTCAGATCACTTCCCTTTGACTTCTCTAAACGACCTAGAATTCAAAAGAAATATGGAAAGATGGTGGGAAGACTCCAATCAAATCGGCCACCCCGGATACTTATTCATTCAAAAGCTAAAATCTCTTGCAAACCACATCAAACCTTGCATTGACAAAAAGGAGTTGGATTCTTTTCTGACTCAAAAGGAGAATGATCGTAGACTTTCTCTGAAAAATGATCTCAGTCAATTATCCCTCAAAGAATCTCAATTCTGGTACCAAAGAGCAAAAAAGCTTTGGCTCAAGGAGGGAGATGAAAACTCATCCTTCTTCCATAGAATTTGTTCTTCGAGACAAAAGAGAAATTTCATACATGAAATTCTGGACGAAGATGGATCGACTCAGAACACGAACAACAACATCTCAAGTGCCTTTATTAAGTACTTCTCCTCCATATACAAAGGCTCCAATAAAAGGGAAACTTTCTTTATTGAAAATTTCAACTGGAATCCCATTGACTATGCAAAGAGGTCTCATCTTTGTGCCCCCTTCACAGAAGAAGAGATAAAAGGGGTGATCAACTCCTTCGATGGAAAGAAAGCTCCCGGACCAGACGAGTTTCCTCAAACCTTCTTCTCAAATCTGATATTTTGGACATCTTTAAGGACTTCTTCGAGAAAGGTGTTATCAAGAAGAATATGA

Coding sequence (CDS)

ATGTTGAATAATTTCATCTCTAACAACCTTTTGATAGACCCTCCTCTCACAAATAACAAATTCACCTGGTCAAACTTAATAACTCCTCCTATCTTTTCCCAAGTCCTATTCAAACCTCACACCACCAGAACCCTTTCTAGACCTACTTCAGATCACTTCCCTTTGACTTCTCTAAACGACCTAGAATTCAAAAGAAATATGGAAAGATGGTGGGAAGACTCCAATCAAATCGGCCACCCCGGATACTTATTCATTCAAAAGCTAAAATCTCTTGCAAACCACATCAAACCTTGCATTGACAAAAAGGAGTTGGATTCTTTTCTGACTCAAAAGGAGAATGATCGTAGACTTTCTCTGAAAAATGATCTCAGTCAATTATCCCTCAAAGAATCTCAATTCTGGTACCAAAGAGCAAAAAAGCTTTGGCTCAAGGAGGGAGATGAAAACTCATCCTTCTTCCATAGAATTTGTTCTTCGAGACAAAAGAGAAATTTCATACATGAAATTCTGGACGAAGATGGATCGACTCAGAACACGAACAACAACATCTCAAGTGCCTTTATTAAGTACTTCTCCTCCATATACAAAGGCTCCAATAAAAGGGAAACTTTCTTTATTGAAAATTTCAACTGGAATCCCATTGACTATGCAAAGAGGTCTCATCTTTGTGCCCCCTTCACAGAAGAAGAGATAAAAGGGGTGATCAACTCCTTCGATGGAAAGAAAGCTCCCGGACCAGACGAGTTTCCTCAAACCTTCTTCTCAAATCTGATATTTTGGACATCTTTAAGGACTTCTTCGAGAAAGGTGTTATCAAGAAGAATATGA

Protein sequence

MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQVLFKPHTTRTLSRPTSDHFPLTSLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLKSLANHIKPCIDKKELDSFLTQKENDRRLSLKNDLSQLSLKESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFIKYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDEFPQTFFSNLIFWTSLRTSSRKVLSRRI

Homology

[Close]

BLAST of IVF0005542 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.5e-99
Identity = 196/315 (62.22%), Postives = 225/315 (71.43%), Query Frame = 0


Query: 1    MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
            MLNNFISNNLLIDPPLTNN+FTWSNL  PP FS++           LF PHTTRTL R T
Sbjct: 889  MLNNFISNNLLIDPPLTNNRFTWSNLRNPPTFSRIDRFLYNSSWENLFSPHTTRTLPRST 948

Query: 61   SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
            SDHFPL                     +L+D EFKRNM RWWE+S Q G+PG+ FIQ+LK
Sbjct: 949  SDHFPLVCEDSNPKLSWGPIPFRLNSITLSDPEFKRNMGRWWENSIQAGYPGFSFIQRLK 1008

Query: 121  SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
            SLAN IKP                      IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 1009 SLANFIKPWQKEKLHSLTYAKEAIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 1068

Query: 181  KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
            KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+GS QNTNN+IS+AFI
Sbjct: 1069 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGSIQNTNNSISTAFI 1128

Query: 241  KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
            K+FS IY+ S K +  FIEN +WNPI  ++ SHLCAPF E EIKGVINSFDGKK PGPD 
Sbjct: 1129 KFFSRIYRSSTKSDPLFIENLDWNPIASSEWSHLCAPFLEGEIKGVINSFDGKKTPGPDG 1188

[Close]

BLAST of IVF0005542 vs. ExPASy TrEMBL
Match: A0A5D3C3M3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003160 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.1e-97
Identity = 194/316 (61.39%), Postives = 222/316 (70.25%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
           MLNNFISNNLLIDPPLTNN++TWSNL  PP FS           + LF PH TRTLSRPT
Sbjct: 601 MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWETLFNPHITRTLSRPT 660

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +LND +FKRNMERWWE S Q GHPG+ FI++LK
Sbjct: 661 SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPKFKRNMERWWELSVQNGHPGFSFIRRLK 720

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN IKP                      IDK ELD+ L+Q+E++RRL+LK +LS LSL
Sbjct: 721 SLANLIKPWQKEKFHSLTSAKENIIREVDSIDKNELDTPLSQEESNRRLALKAELSDLSL 780

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 781 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 840

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
            +FSSIY+ S K++  FIEN  WNPIDY+  S LCAPF EEEIKGVI SFDG KAPGPD 
Sbjct: 841 NHFSSIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKAPGPDG 900

[Close]

BLAST of IVF0005542 vs. ExPASy TrEMBL
Match: A0A5D3BT10 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00220 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.2e-97
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
           MLNNFISNNLLIDPPL+NN++TWSNL  PP FS++           LF PH TRTL RPT
Sbjct: 17  MLNNFISNNLLIDPPLSNNRYTWSNLRIPPTFSRLDRFLYNSNWEFLFNPHITRTLPRPT 76

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +LND EFKRNM+RWW+ S Q GHP + FIQ+LK
Sbjct: 77  SDHFPLVCEDSSPTVRWGPAPFRLNSIALNDPEFKRNMDRWWDLSAQKGHPDFAFIQRLK 136

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN IKP                      IDKKELD+ L Q+++DRRL+LK +LS LSL
Sbjct: 137 SLANLIKPWQKEKFHSLTSAKDNIIREVDAIDKKELDTPLCQEDSDRRLALKAELSDLSL 196

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
            YFS +Y+ S K++  FI+N  WNPIDY++ S LCAPF EEEIKGVINSF+G KAPGPD 
Sbjct: 257 NYFSRLYRSSTKKDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKAPGPDG 316

[Close]

BLAST of IVF0005542 vs. ExPASy TrEMBL
Match: A0A5D3BUZ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00050 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.2e-96
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
           MLNNFI+NNLLIDPPL NN+FTWSNL  PP FS++           LF PHTTRTL R T
Sbjct: 1   MLNNFITNNLLIDPPLINNRFTWSNLRNPPTFSRIDRFLYNSTWENLFSPHTTRTLPRST 60

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +L+D EFKRNM RWWE+S Q GHPG+ FIQ+LK
Sbjct: 61  SDHFPLVCEDSNPKLSWGPVPFRLNSIALSDPEFKRNMGRWWENSIQDGHPGFSFIQRLK 120

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN I P                      IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 121 SLANFINPWQKEKLHSLTYAKDNIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 180

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+G  QNTNN IS+AFI
Sbjct: 181 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGLIQNTNNGISTAFI 240

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
           K+FS IY+ S K +  FI+N +WNPI++++  HLCAPF E EIKGVINS DGKK PGPD 
Sbjct: 241 KFFSRIYRSSTKSDPLFIDNLDWNPIEHSEWPHLCAPFLEGEIKGVINSLDGKKTPGPDG 300

[Close]

BLAST of IVF0005542 vs. ExPASy TrEMBL
Match: A0A5A7TDG1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001050 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.6e-96
Identity = 191/316 (60.44%), Postives = 221/316 (69.94%), Query Frame = 0


Query: 1    MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
            MLN+FISNNLLIDPPLTNN++TWSNL  PP FS           ++LF PH TRTL RPT
Sbjct: 801  MLNDFISNNLLIDPPLTNNRYTWSNLRNPPTFSRLDRFLYNSRWEILFNPHITRTLPRPT 860

Query: 61   SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
            SDHFPL                     +LND EFKRNMERWWE S Q GHPG+ FIQ+LK
Sbjct: 861  SDHFPLVCEDSTSTLRWGPAPFRLNSIALNDPEFKRNMERWWELSVQNGHPGFFFIQRLK 920

Query: 121  SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
            SLAN IKP                      IDK ELD+ L+ +E++RRL+LK +L+ LSL
Sbjct: 921  SLANLIKPWQKEKFQSLTSAKENIIREVDSIDKNELDTPLSLEESNRRLALKAELNDLSL 980

Query: 181  KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
            KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 981  KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 1040

Query: 241  KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 265
             +FS IY+ S K++  FIEN  WNPIDY+  S LCAPF+EEEIKGVI SFDG KAPGPD 
Sbjct: 1041 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFSEEEIKGVIKSFDGNKAPGPDG 1100

[Close]

BLAST of IVF0005542 vs. NCBI nr
Match: KAA0034017.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK02813.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 363 bits (932), Expect = 1.20e-117
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
           MLNNFISNNLLIDPPL+NN++TWSNL  PP FS++           LF PH TRTL RPT
Sbjct: 17  MLNNFISNNLLIDPPLSNNRYTWSNLRIPPTFSRLDRFLYNSNWEFLFNPHITRTLPRPT 76

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +LND EFKRNM+RWW+ S Q GHP + FIQ+LK
Sbjct: 77  SDHFPLVCEDSSPTVRWGPAPFRLNSIALNDPEFKRNMDRWWDLSAQKGHPDFAFIQRLK 136

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN IKP                      IDKKELD+ L Q+++DRRL+LK +LS LSL
Sbjct: 137 SLANLIKPWQKEKFHSLTSAKDNIIREVDAIDKKELDTPLCQEDSDRRLALKAELSDLSL 196

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTNNNIS AF+
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNLIHEIQDEEGSIQNTNNNISLAFV 256

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
            YFS +Y+ S K++  FI+N  WNPIDY++ S LCAPF EEEIKGVINSF+G KAPGPD 
Sbjct: 257 NYFSRLYRSSTKKDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKAPGPDG 316

[Close]

BLAST of IVF0005542 vs. NCBI nr
Match: KAA0037445.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01919.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 361 bits (927), Expect = 1.25e-115
Identity = 190/316 (60.13%), Postives = 222/316 (70.25%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
           MLNNFI+NNLLIDPPL NN+FTWSNL  PP FS++           LF PHTTRTL R T
Sbjct: 1   MLNNFITNNLLIDPPLINNRFTWSNLRNPPTFSRIDRFLYNSTWENLFSPHTTRTLPRST 60

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +L+D EFKRNM RWWE+S Q GHPG+ FIQ+LK
Sbjct: 61  SDHFPLVCEDSNPKLSWGPVPFRLNSIALSDPEFKRNMGRWWENSIQDGHPGFSFIQRLK 120

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN I P                      IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 121 SLANFINPWQKEKLHSLTYAKDNIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 180

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+G  QNTNN IS+AFI
Sbjct: 181 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGLIQNTNNGISTAFI 240

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
           K+FS IY+ S K +  FI+N +WNPI++++  HLCAPF E EIKGVINS DGKK PGPD 
Sbjct: 241 KFFSRIYRSSTKSDPLFIDNLDWNPIEHSEWPHLCAPFLEGEIKGVINSLDGKKTPGPDG 300

[Close]

BLAST of IVF0005542 vs. NCBI nr
Match: KAA0058104.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 356 bits (914), Expect = 3.02e-115
Identity = 189/316 (59.81%), Postives = 219/316 (69.30%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
           MLNNFISNNLLIDPPLTNN++TWSNL  PP FS           ++LF PH TRTL R T
Sbjct: 17  MLNNFISNNLLIDPPLTNNRYTWSNLRNPPTFSHLDRFLYNSSWEILFNPHITRTLPRTT 76

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +LND EFKRNMERWWE S Q GHPG+ FIQ+LK
Sbjct: 77  SDHFPLVCEDSTSTLRWGPAPFRLNSITLNDPEFKRNMERWWELSIQNGHPGFSFIQRLK 136

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN IKP                      IDK ELD+ L+Q+E++RRL+LK +L+ LSL
Sbjct: 137 SLANLIKPWQKEKFHSLTTAKENIIREVDAIDKNELDTPLSQEESNRRLALKAELNDLSL 196

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFW+QRAKKLW+KEGDEN +FFHRICSSRQKRN IHEI +E+GS QNTNNNIS AF+
Sbjct: 197 KESQFWFQRAKKLWIKEGDENYAFFHRICSSRQKRNLIHEIQNEEGSIQNTNNNISLAFV 256

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
            +FS IY+ S K++  FIEN  WNPIDY+  S LCAPF EEEIKGVI SFDG KAPGPD 
Sbjct: 257 NHFSRIYRCSTKKDPLFIENLEWNPIDYSDWSLLCAPFLEEEIKGVIKSFDGNKAPGPDG 316

[Close]

BLAST of IVF0005542 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 369 bits (948), Expect = 2.14e-113
Identity = 196/315 (62.22%), Postives = 225/315 (71.43%), Query Frame = 0


Query: 1    MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFSQV-----------LFKPHTTRTLSRPT 60
            MLNNFISNNLLIDPPLTNN+FTWSNL  PP FS++           LF PHTTRTL R T
Sbjct: 889  MLNNFISNNLLIDPPLTNNRFTWSNLRNPPTFSRIDRFLYNSSWENLFSPHTTRTLPRST 948

Query: 61   SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
            SDHFPL                     +L+D EFKRNM RWWE+S Q G+PG+ FIQ+LK
Sbjct: 949  SDHFPLVCEDSNPKLSWGPIPFRLNSITLSDPEFKRNMGRWWENSIQAGYPGFSFIQRLK 1008

Query: 121  SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
            SLAN IKP                      IDKKELD+ LTQ+E++RRL+LK DLS+LSL
Sbjct: 1009 SLANFIKPWQKEKLHSLTYAKEAIIREVDSIDKKELDTPLTQEESNRRLALKADLSELSL 1068

Query: 181  KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
            KESQFWYQRAKKLWL+EGDENSSFFHRICSSRQKR+FIHEI DE+GS QNTNN+IS+AFI
Sbjct: 1069 KESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGSIQNTNNSISTAFI 1128

Query: 241  KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 263
            K+FS IY+ S K +  FIEN +WNPI  ++ SHLCAPF E EIKGVINSFDGKK PGPD 
Sbjct: 1129 KFFSRIYRSSTKSDPLFIENLDWNPIASSEWSHLCAPFLEGEIKGVINSFDGKKTPGPDG 1188

[Close]

BLAST of IVF0005542 vs. NCBI nr
Match: KAA0063661.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 349 bits (896), Expect = 2.63e-113
Identity = 185/316 (58.54%), Postives = 217/316 (68.67%), Query Frame = 0


Query: 1   MLNNFISNNLLIDPPLTNNKFTWSNLITPPIFS-----------QVLFKPHTTRTLSRPT 60
           MLNNFISNN LIDPPL+NN++TWSNL   P FS           +VLF  H TRTL RPT
Sbjct: 17  MLNNFISNNSLIDPPLSNNRYTWSNLRISPTFSRLDRFLYNPKWEVLFNSHITRTLPRPT 76

Query: 61  SDHFPLT--------------------SLNDLEFKRNMERWWEDSNQIGHPGYLFIQKLK 120
           SDHFPL                     +LND EFKRNMERWW+ S Q GH G+ FIQ+LK
Sbjct: 77  SDHFPLACEDSSPTVRWGPAPFRLNSIALNDPEFKRNMERWWDLSAQKGHLGFAFIQRLK 136

Query: 121 SLANHIKP---------------------CIDKKELDSFLTQKENDRRLSLKNDLSQLSL 180
           SLAN IKP                      IDKKELD+ L Q+++DRRL+LK +L+  SL
Sbjct: 137 SLANLIKPWQKEKFHSLSSAKENIIKEVDAIDKKELDTLLCQEDSDRRLALKAELNDFSL 196

Query: 181 KESQFWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEILDEDGSTQNTNNNISSAFI 240
           KESQFW+QRAKKLWLKEGDENS+FFHRICSSRQKRN IHEI DE+GS QNTN NIS AF+
Sbjct: 197 KESQFWFQRAKKLWLKEGDENSAFFHRICSSRQKRNIIHEIQDEEGSIQNTNINISLAFV 256

Query: 241 KYFSSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAPGPDE 264
            YF+++Y+ S K +  FI+N  WNPIDY++ S LCAPF EEEIKGVINSF+G KAPGPD 
Sbjct: 257 NYFTNLYRSSTKIDPLFIDNLEWNPIDYSEWSPLCAPFLEEEIKGVINSFEGNKAPGPDG 316

[Close]

BLAST of IVF0005542 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-07
Identity = 36/130 (27.69%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 133 FWYQRAKKLWLKEGDENSSFFHRICSSRQKRNFIHEI-LDEDGSTQNTNNNISSAFIKYF 192
           F+ Q+++  WL++GD N+ FFH++  + Q +N I  + +D+D   +N    +    + Y+
Sbjct: 434 FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENV-TQVKEMIVAYY 493

Query: 193 -------SSIYKGSNKRETFFIENFNWNPIDYAKRSHLCAPFTEEEIKGVINSFDGKKAP 252
                  S I    + +    I  F  N       S L A  +++EI   + +    KAP
Sbjct: 494 THLLGSDSDILTPDSVQRIKDIHPFRCND---TLASRLSALPSDKEITAAVFAMPRNKAP 553

Query: 253 GPDEFPQTFF 255
           GPD F   FF
Sbjct: 554 GPDSFTAEFF 559

The following BLAST results are available for this feature:

BLAST of IVF0005542 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLV7	4.5e-99	62.22	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C3M3	1.1e-97	61.39	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BT10	3.2e-97	60.13	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BUZ3	1.2e-96	60.13	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TDG1	1.6e-96	60.44	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0005542 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034017.1	1.20e-117	60.13	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK028...	[more]
KAA0037445.1	1.25e-115	60.13	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK019...	[more]
KAA0058104.1	3.02e-115	59.81	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYJ99315.1	2.14e-113	62.22	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0063661.1	2.63e-113	58.54	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	2.3e-07	27.69	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33710:SF24	SUBFAMILY NOT NAMED	coord: 108..255
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 108..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005542.1	IVF0005542.1	mRNA