IVF0005413 (gene) Melon (IVF77) v1

Overview
NameIVF0005413
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr05: 8655054 .. 8655428 (+)
RNA-Seq ExpressionIVF0005413
SyntenyIVF0005413
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTGATAACTTTGTCCAACTAGCAATTCCTCACTTTGATGGTCATTATGACCATTGGAGCATGCTAATGTAAAATTTCTTGAGGTTTAAGGAATATTGGCAGGTTGTTGAATCTAGAGTAACAGAGCCTGCACTTGGAGCAATATTGTTTGATACACAAAAGTCAGAATTGAAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTCTTCCAAGCAATTGATCGAGCAACTTTGGAAACAATTCTTTGCAAAGAAACCTCCAAACAGATTTGGGACTCTATGAAAAAAAGCATCAAAGGAACGCGAAGGCAGAGCGGGTGTAACTTTAAGGTCTTCGAACCGAATTCGAGACTCTACGAATGA

mRNA sequence

ATGACAACTGATAACTTTGTCCAACTAGCAATTCCTCACTTTGATGGTCATTATGACCATTGGAGCATGCTAATAGTAACAGAGCCTGCACTTGGAGCAATATTGTTTGATACACAAAAGTCAGAATTGAAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTCTTCCAAGCAATTGATCGAGCAACTTTGGAAACAATTCTTTGCAAAGAAACCTCCAAACAGATTTGGGACTCTATGAAAAAAAGCATCAAAGGAACGCGAAGGCAGAGCGGGTGTAACTTTAAGGTCTTCGAACCGAATTCGAGACTCTACGAATGA

Coding sequence (CDS)

ATGACAACTGATAACTTTGTCCAACTAGCAATTCCTCACTTTGATGGTCATTATGACCATTGGAGCATGCTAATAGTAACAGAGCCTGCACTTGGAGCAATATTGTTTGATACACAAAAGTCAGAATTGAAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTCTTCCAAGCAATTGATCGAGCAACTTTGGAAACAATTCTTTGCAAAGAAACCTCCAAACAGATTTGGGACTCTATGAAAAAAAGCATCAAAGGAACGCGAAGGCAGAGCGGGTGTAACTTTAAGGTCTTCGAACCGAATTCGAGACTCTACGAATGA

Protein sequence

MTTDNFVQLAIPHFDGHYDHWSMLIVTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRRQSGCNFKVFEPNSRLYE
Homology
BLAST of IVF0005413 vs. ExPASy TrEMBL
Match: A0A2I0B786 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005537 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28
Identity = 67/107 (62.62%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M +++FVQ AIP FDGHYDHWSMLI                V EPA G +L D QK+ELK
Sbjct: 1   MASESFVQAAIPRFDGHYDHWSMLIENFLRSKEYWTVVVSRVAEPAAGVVLTDAQKAELK 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 92
            LKLKDLKAKNYLFQAIDR+ LETILCK+T+K IWDSMK   +GT R
Sbjct: 61  GLKLKDLKAKNYLFQAIDRSILETILCKDTAKHIWDSMKTKYQGTAR 107

BLAST of IVF0005413 vs. ExPASy TrEMBL
Match: A0A1U7YQG9 (uncharacterized protein LOC104586702 OS=Nelumbo nucifera OX=4432 GN=LOC104586702 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 64/107 (59.81%), Postives = 73/107 (68.22%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M TDNFVQ AIP FDGHYDHWSML+                + EPA G  + D QK+EL+
Sbjct: 1   MATDNFVQPAIPRFDGHYDHWSMLMENFLRSKEYWQVVSNGIAEPAAGTAVTDAQKTELE 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 92
              LKDLKAKNYLFQAIDR+ LETI CK+TSK IWDSMKK  +G+ R
Sbjct: 61  GQCLKDLKAKNYLFQAIDRSILETIPCKDTSKHIWDSMKKKYQGSAR 107

BLAST of IVF0005413 vs. ExPASy TrEMBL
Match: A0A5C7ICJ8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_008318 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M ++N+VQ +IP FDGHYDHWSML+                V EPA   +L  TQK+EL+
Sbjct: 1   MASENYVQPSIPRFDGHYDHWSMLMENFLRSKEYWQIIEVGVAEPAENVVLTATQKTELE 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 92
           ALKLKDLKAKNYLFQAIDR+ LETIL KE+SK+IWDSMKK  +G+ R
Sbjct: 61  ALKLKDLKAKNYLFQAIDRSILETILSKESSKEIWDSMKKKYQGSSR 107

BLAST of IVF0005413 vs. ExPASy TrEMBL
Match: A0A6A6K386 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_043359 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M + NF+Q +IP FDGHYDHWSML+                  EPA G  L D QK+EL 
Sbjct: 1   MASKNFIQPSIPRFDGHYDHWSMLMENFLRSKEYWQVVDSGFAEPAAGTSLTDAQKTELD 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 92
           A KLKDLKAKNYLFQAID + LETILCK+TSKQIWDSMKK  +G  R
Sbjct: 61  AQKLKDLKAKNYLFQAIDHSILETILCKDTSKQIWDSMKKKYQGNAR 107

BLAST of IVF0005413 vs. ExPASy TrEMBL
Match: A0A438DX68 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086202 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M ++NFVQ AIP FDGHYDHWSML+                + EPA  + + D QK+E++
Sbjct: 1   MASENFVQPAIPRFDGHYDHWSMLMENFLRSKEYWQVVSGGIVEPATNSPMTDAQKTEIE 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRRQSGCNFKVFE 102
             +LKDLKAKNYLFQAIDR+ LETILCK+TS++IWDSMKK  +G+ R      + F+
Sbjct: 61  GQRLKDLKAKNYLFQAIDRSILETILCKDTSQKIWDSMKKKYQGSTRTKRHQLQAFQ 117

BLAST of IVF0005413 vs. NCBI nr
Match: PKA63642.1 (hypothetical protein AXF42_Ash005537 [Apostasia shenzhenica])

HSP 1 Score: 132 bits (331), Expect = 2.62e-37
Identity = 67/107 (62.62%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M +++FVQ AIP FDGHYDHWSMLI                V EPA G +L D QK+ELK
Sbjct: 1   MASESFVQAAIPRFDGHYDHWSMLIENFLRSKEYWTVVVSRVAEPAAGVVLTDAQKAELK 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 91
            LKLKDLKAKNYLFQAIDR+ LETILCK+T+K IWDSMK   +GT R
Sbjct: 61  GLKLKDLKAKNYLFQAIDRSILETILCKDTAKHIWDSMKTKYQGTAR 107

BLAST of IVF0005413 vs. NCBI nr
Match: KAG2726386.1 (hypothetical protein I3760_01G109800 [Carya illinoinensis])

HSP 1 Score: 127 bits (320), Expect = 1.94e-35
Identity = 63/109 (57.80%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M  ++F+Q AIPHFDGHYDHWSML+                V EP  G +L D QK+EL+
Sbjct: 15  MAFESFIQPAIPHFDGHYDHWSMLMENFLRSEEYWMVVVSGVAEPTEGVVLIDAQKTELE 74

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRRQS 93
            LKLKD+KAKNYLFQAID + L+TILCK+T+K IWDSMKK  +GT R S
Sbjct: 75  GLKLKDIKAKNYLFQAIDHSILKTILCKDTAKHIWDSMKKKYQGTARAS 123

BLAST of IVF0005413 vs. NCBI nr
Match: XP_034707079.1 (uncharacterized protein LOC117930546 [Vitis riparia])

HSP 1 Score: 130 bits (327), Expect = 5.80e-35
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M +D FVQ AIP FDGHYDHWSML+                V EPA G +L D QK EL+
Sbjct: 1   MASDTFVQPAIPRFDGHYDHWSMLMENFLRSKDYWPVVVSGVAEPAEGVVLTDVQKMELE 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 91
           ALKLKDLKAKNY FQAIDR+ LETILCK+T+K IWDSMKK  +GT R
Sbjct: 61  ALKLKDLKAKNYFFQAIDRSILETILCKDTAKHIWDSMKKKYQGTAR 107

BLAST of IVF0005413 vs. NCBI nr
Match: XP_027152457.1 (uncharacterized protein LOC113752541 [Coffea eugenioides] >XP_027157388.1 uncharacterized protein LOC113758911 [Coffea eugenioides])

HSP 1 Score: 127 bits (320), Expect = 5.91e-34
Identity = 66/107 (61.68%), Postives = 74/107 (69.16%), Query Frame = 0

Query: 1   MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELK 60
           M  DNFVQ AIP FDGHYDHWSML+                V EP +G IL + QK EL+
Sbjct: 1   MAIDNFVQPAIPRFDGHYDHWSMLMENFLRSKEYWQVIESGVAEPTIGEILSEVQKMELE 60

Query: 61  ALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 91
           ALKLKDLKAKNYLFQAIDR  LETIL K+TSKQ+WDSMKK  +G  +
Sbjct: 61  ALKLKDLKAKNYLFQAIDRTILETILSKDTSKQVWDSMKKKYQGNAK 107

BLAST of IVF0005413 vs. NCBI nr
Match: XP_021623171.1 (uncharacterized protein LOC110622816 [Manihot esculenta])

HSP 1 Score: 125 bits (313), Expect = 1.08e-33
Identity = 65/106 (61.32%), Postives = 73/106 (68.87%), Query Frame = 0

Query: 2   TTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKA 61
           T  NFVQ AIP F+GHYDHWSMLI                +  PA G  L D QK+E++A
Sbjct: 3   TETNFVQAAIPRFNGHYDHWSMLIENFLRSKEYWTIVENGIEAPAAGETLTDAQKTEIEA 62

Query: 62  LKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRR 91
            KLKDLKAKNYLFQAI+R+ LETILCKETSK IWDSMKK  +GT R
Sbjct: 63  KKLKDLKAKNYLFQAIERSILETILCKETSKDIWDSMKKKYQGTAR 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2I0B7866.2e-2862.62Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005537 P... [more]
A0A1U7YQG91.3e-2559.81uncharacterized protein LOC104586702 OS=Nelumbo nucifera OX=4432 GN=LOC104586702... [more]
A0A5C7ICJ81.7e-2559.81Reverse transcriptase Ty1/copia-type domain-containing protein OS=Acer yangbiens... [more]
A0A6A6K3861.7e-2559.81Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_043359 PE=4 SV=1[more]
A0A438DX682.9e-2552.14Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086202 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
PKA63642.12.62e-3762.62hypothetical protein AXF42_Ash005537 [Apostasia shenzhenica][more]
KAG2726386.11.94e-3557.80hypothetical protein I3760_01G109800 [Carya illinoinensis][more]
XP_034707079.15.80e-3562.62uncharacterized protein LOC117930546 [Vitis riparia][more]
XP_027152457.15.91e-3461.68uncharacterized protein LOC113752541 [Coffea eugenioides] >XP_027157388.1 unchar... [more]
XP_021623171.11.08e-3361.32uncharacterized protein LOC110622816 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 2..92
NoneNo IPR availablePANTHERPTHR34222:SF47SUBFAMILY NOT NAMEDcoord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005413.2IVF0005413.2mRNA