IVF0004604 (gene) Melon (IVF77) v1

Overview


Name	IVF0004604
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr06: 20480923 .. 20481186 (+)
RNA-Seq Expression	IVF0004604
Synteny	IVF0004604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGTCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGTCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGTCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLTVARSEGREA

Homology

[Close]

BLAST of IVF0004604 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-23
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSR ISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0004604 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-23
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSR ISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0004604 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSRVISYSNIQT IGCSNIREFIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0004604 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-21
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSR ISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0004604 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +P A PEN SV S LPS+EKSR I+YSNIQ  IGCSNIREFIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0004604 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 6.02e-31
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSR ISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0004604 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 1.47e-29
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSR ISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0004604 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.61e-28
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSRVISYSNIQT IGCSNIREFIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0004604 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.09e-26
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSR ISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

[Close]

BLAST of IVF0004604 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (251), Expect = 1.08e-24
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRVISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +P A PEN SV S LPS+EKSR I+YSNIQ  IGCSNIREFIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:

BLAST of IVF0004604 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNL7	2.2e-23	85.51	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	2.2e-23	85.51	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	1.2e-21	82.61	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UMJ9	3.5e-21	85.07	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	2.1e-18	73.91	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0004604 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054655.1	6.02e-31	85.51	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	1.47e-29	85.51	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	1.61e-28	82.61	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0057143.1	1.09e-26	85.07	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	1.08e-24	73.91	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004604 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004604.1	IVF0004604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane