IVF0004010 (gene) Melon (IVF77) v1

Overview


Name	IVF0004010
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	General transcription and DNA repair factor IIH helicase subunit XPD
Location	chr01: 27692713 .. 27701470 (+)
RNA-Seq Expression	IVF0004010
Synteny	IVF0004010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAGAATAAAATGGGGTGAAAGAGACGGAGGATTTGCTCGGGCAAAGACTCTGTTCGCGTGAAGAACGAGCACCTCTAACCAGACCTCCGAAATCTCCTTGCCGCCACCGCCGCCGCCGCGGTTCTGGTTTTCCGCCGTTATCTCGTCACCGGCGGAGCAAGCGCCATGAAGTTTCAATTAGAGGATGTCACTGTCTACTTTCCTTACGATCACATTTACCCGGAGCAGTACGCTTACATGCTTGAGCTGAAGCGAGCTCTCGACGCCAAGGGACATTGTCTTCTCGAAATGCCCACCGGCACCGGAAAAACCATCGCCCTTCTTTCCCTTATCACCAGCTACGCCCTCTCCAAACCCCAAAACCCTGTCAAGCTCATCTACTGCACTCGGACTGTCCACGAAATGGAGAAGACCCTCGCAGAGCTCAGATTGCTCCATGATTACCAGGTTCAACAGCTTGGACCTCGTGCTCAGATCTTGGCTGTGGGGCTTTCGTCCAGGAAGAATCTGTGTGTCAATCCGAAGGTTTTGGCGTCGGAGAGTCGGGATTCTGTTGACGCTGGTTGTCGCAAGTTGACGGCGAGTTGGGTTAGGGCTATGGCGGCTGAGAATCCCAATGTGCCCACTTGTGAGTTCTTTGAGCAATATGAAAAGGCGGGCTCAAGTGCTGTGTTGCCGCCGGGGGTTTATACGTTGCAGGTACTGGTTGAATTGAAACTTGAAATTTCGTGAAATTGAGAATTCCCTAATCACCAACGGTGATTTGAATTGTGTAACGGATGCTGATGAACTAGAATAGAGGTTATTTCTGAATGATTTGGAATGGTATTTCTTTGGTTCCCTGAGATGTTGCCTCATGAAATTTAAAATTCCAGTTTCTTCTTCGGGTGTAGTTCTTGAAACAGTGTTGAGATTATAATTCAGTAGCATATTTAGTTTTTTGAGGATTGGCAGATAAAGCTTGAGTTTCATTTACGGCTTTACTTCTAGTATTATTGTCTAAAGATAAGTTGATTCAGAAATAATTTATATATATTCTAGGCTTTATTGACTAAATTCTTCAAATATTGATTTCGATAGATGAAATCATCAGTTCCTTGACTGAATCATTCATGTAATTTCCTCACTGAATTTATAGGATCTGAGAGCTTTTGGGACAAAGAAGGGCTGGTGTCCTTACTTCTTGGCACGGCATATGGTACAGTTTGCAAATGTGGTAGTATATAGTTATCAATACTTGCTTGATCCCAAAGTGGCTAGCATTATATCCAAGGAAATGCAGCGAGAATCTGTTGTAGTGTTTGATGAGGCACACAATATTGATAACGTGTGTATTGAAGCCCTTAGTGTTAGTGTGAGGAGGCAGACTATTGAAGGTGCCAGGAGAAATCTCAATAAGATGCGTCAGGAGATTGAGAGGTATAATCAGATCCTAAGTTGCTTTCTCGTATCTTCATACGATACTTTGAGAGGTCTTGGCTCATTTTTTCTAATGTTCTTCAGAGTTAACGTGAAAATGTCTCTTATTGTAAGATTTATCTAGGTTTCTTAAATTTCAATAAGATGCTCTAGGTGATTCTGTGCACTGTCTAGGTATTTAGTTTTTGTTTCTTTTAAATTGAAATTTAATCAGTATTTTCCTTGATATGGTAGGAAGGTTCAAGGAAACTGATGCAGGTAGACTGCGTGCAGAATATAACAGGCTGGTGGAGGGTTTGGCACAAAGAGGAAACCTACCTAGTATGTTGTACATTATTGTAGTTGTATCAAGATTGCATGATTCTTTTCCTTGTATAATATAATATCCTAAATTTCTGTAATTTTTTGGTGCAGTTTCAGACACGTGGCTCTCAAACCCTGCTCTTCCAGATGATATTTTGAAGGAGGCTGTGCCTGGAAATATACGCCGAGCTGAACACTTTATACATGTATTGCGGAGATTGGTTCAGTATCTTGAAGGACGATTGGACACTGATAATGTTGAGAAGGAAGGGCTTGTAACTTTTGTTGGCTCTATTGGTTCTCAGGCTGGAATTGACCAAAAGACCTTGAAGTTTTGTTACGATCGTCTCCACTCTCTCATGCTGACACTTGAAATTACCGACACAGATGAGTTTTTGCACGTACAGACTATATGTGACTTTGCAACACTCGTTGGAACATATGCACGAGGTTTCTCAATTATAATTGAGCCTGTTGATGAGAGAATGCCGCATATTCCTGACCCGGTACTGCAGGTTAGTTCATCTACTTTATTTCTCTCTTACACATGTTCACATCATTCTTGAAAGCAGTACAGAATTTGAATGCTTAAAGTTATACTCTTAGGCTTAGATGAGCCCTCGATGGTGGAGAGGTGTTTAAGTGGACCCCTTCACAGATAGGTACATGGTTTTTGTATTTAGCTACCTTCTGATGTTAAAACGTAGAGGCTTCGTAGATTAGGAGAGTCCTCACAAAATCTTTCCAACTTCTTTTTTCTGGGATGGAGATTCTCTCTTCTTCTCATATTTCAACATTGAAATTTGAGGCTGTCCAGAAGATGTACTAATCAGAATAAGAAAATCCTAGAATCTTTCAAAACAAGCCACAATTTGGGTGATTGGGGGAGGTAAGGAACACAAGAATCTTTCTAAACAAGGAAAGATCCTCGGAGGAATTGCTTGATTCTCCTCATTTTTCATTCTCTATTGTTAGAGAAGTTTTTTGCTGTTCTTTATGGATGGTCTCCTCTTCTCTACCTTTCATTTAATCAATGAAATTGTTTCCCATGAAAAAAAGAAATTCCTAAAGAAGAAGTAAACATCTACCTCTGTTCTCTAGTTGCATAGCCTCTAGCTCATGCATGATGCTATTTAGTATTTACTGAAGTTTAAACTTTATATTGTGTTTTCAATATTTATGTCCATTTTTTAAACAAGATTATATATATTAATATTTCCTTATTTTCTCCTCAGCTTAGCTGTCATGATGCCTCACTTGCTATTAAGCCTGTTTTTGAACGATTTCAATCAGTTGTGATTACGTCTGGTACTCTGAGCCCAATTGATCTATACCCTCGTTTGCTCAATTTTAATCCTGTGGTTAGCAGAAGTTTTACAATGTCCTTGACCAGAGACTGCATATGCCCAATGGTTCTCACTCGTGGCAGGTGTGTGGTTCTGTTGAAATACGTTATCCTTCAATTCTGTATATTATTATTGAAGTCCTTTTCAAAATTTTTATTTTCCTTATAAAAACAGTATTTTTGTTAAGTAATATGTAGGATCTTCTGTAATGAACAAAGTTTGTTTTTTTTTTTTGGTTCTAGCGACCAGCTTCCAGTTAGTACTAAATTTGATATGAGAAGCGATCTTGGTGTAGTAAGGAATTATGGGAGGCTCTTGCTCGAGATGGTCTCAGCAGTCCCGGATGGGATAGTATGTTTCTTTGTCAGTTACTCATATATGGATGGCATTGTAAATAGTTGGAATGAAACTGGCATCCTAAAGGTGACGCAACTACTCCTGTTTGCTTGTTAACAGCTTATTAGTCGTAACATGATCTACCCTGATCATACTAAGTGGTTAAACTCGTTGCCTCAGGAAATAATGCAGCACAAACTTGTGTTCATTGAGACCCAAGATGTCGTGGAGACTACACTGGCTCTTGACAATTACCGGAAGGCTTGTGATTGTGGGAGAGGTGCTGTGTTTTTTTCCGTAGCCAGGTATCCCATTCTTCTGTCAATGGTTCTCCCCTTTTCCCTTCTTTTTAGTCAGCACAATATGTGGTTCAGATGGGTGTATTATCCTTTTCATACAAGTACAACAGATATATATGAATACAACTTGCACATCGCTGGATAGGTGGCTGATAATTAACAATGACTCCCAAGTCTGTGACTAGACTTGGACTAATAGTTGAGAGAAGTTGAATTTTCATTTTTGTTGCATCAAATATTCTGAACTATGGTTTATTTTTTTTCATTCCCAAATTAATGGCACCAAATGTCCTAATTTATCATGGTGGAATGGGAACGTAAAATACACACTATGAGGGTTTTGATTTCCTTGAGTTATTCTTGATTTTAGGTTACTCTTTTGCTCAGTTTTTGCAGTTTAAATGCCATGGTGATTTGAAATCATAAATTTTAATGAATTTCTTATTTAGAGATCTCTTCTGTAAATTCCAGTTTATGATTCAAAATTTAGTATAATGTTTCTATATCTATTGCATTGAAGTTTGCATTTTGTGTGCAATGCATATAATGTTTAACTAGTGTTTAAAATAATCGTCATCTTGTCTATTAGAAGAAAGCCCAATTTCCTGTTGATATGGGCGTTCTCAATATTGGGAATCCACTCAGAAACAGGTCTATTCTTGCCACATGGTTGTGACAATTCATTCTCACATTTACCACAACACTGCAAAGATAACCTATTATTTCTGGATTTGGACACAAGACGAATAATTGAAGTTCCACTAGGTCTTCGATAAACTGGTGCAACTGGGCCTGCAGGCCCCTTTCTGCTTAAAATCTCATTAAAATTGGAACCCCTCACCGATACTTGAGACAAGAGAAGCCTCCCTCCTAGGCATTCTCCCTATGATATATCTCATTCACTACTGTCTTCTTCATCATATCCCTCTTTTTGGCGTTAGGGAAACGCCACTTGGAGATTTGGAATGGTAGAAATCAAGCTGTTGTATTACCTGCAAGGATAGTTTTGTGAAGGGCCGCTTTTCCTCTGATGCCCCTTAGCAAGCAAGTTTTGGGAGACCTTAGAAATTTCTGATTGGCAAGTGGCTTTCCCAAAGAGCATCAAAGGTTTTCCGGGAGTCCTCTGTTAGGACTTAATAGTGAGGGTTAGTATGGTAATTAGTACTGTCATAAAGTAGTGAAGCAATTGGCATAAATTAGGTAGATGAGGTATATAAGAAGGTAGAGGAGTTAATTATAATTTAGTTAAAGATTTGTGATGGTTTAGCTTTTAAGTGTTCTTAAGAGGTGAGTGCCCAAGTTCCTCAAATTACTCTGTGGTTGTCTTTCATTCTTTCATTTATTTATTTTATATGAAACCGTGCTTCATAGAGAAATATGAAACATTGTCAAAGACATGAAGAAAAGTTTGCAAAAGGAGTTCAAACCTGACTATAGAAACAAACTCCAACCTAAAAGAATCAAGCTGAACTCATAATTACAAAAGGGCTGGGGTGACAGGATGAAGTGTTAAACCTAGCAACCTCCTGGACCTCCTCACGTGATCTCTAAACCCAGATTTTTTAATTCCTCTCAAACTGAGTTCTCCTCGACTGGACAAATATAAGCATGTCACTAAACTCTTTCATTGATCTTGAGAGGGAGGATTCAGGAGCACTTCTCACTTATGATACAACAATCCCTACACCGCACCGGGCATAATCCAAAATGAAACAATAATTCTAAAGGGACTGACAATACTCACACTCTACAGCACACTGTCAATATCCTCCTAATGTCTCTTGCATAGAATGCACCAATGCAGACACAATGGAAAGGAAGAATGCCTTTTTGGTCCAAGGTATTGACTCTTCGATGCAAAACCTGATAAGTAAAAAATTTGACCTTAGAAATTTTAATCTTTAAAAGAGAGGAGAAAGCCAAAGCCACGTGGGAGAGAAGGTTACATAAATATGAAAAAAGGCATTGCACGAGAAGCCCCAAAAGGACCGGGAGTCCAAACCTTAAAGCCCCTCCCCCATGGGCCACGATACGCATGAAGGCCACAAAGGATAGAGAGAAGGGTTGTTGCTTCCATTGTCTCTCTACGAGAAAGAGGGCGACAAAAGACCTAGGAAAATGAAAAGGAGGAATCCGGGGTAGGCAAGATTGTAGTCACACATTGTAACTTCTTATCTGAAAAGTGGTATTGACGTTGAAACAAAGGACAGGGGAGAAACCCCACACTATTCCTCTAAAAAAAATCTTTACCCCTTTCGCTACAAAACATTTCATAAGTTGGGAGAACAAAGTGAATCCAGATTCCAGAAGAGATAGTTAAATAGAAGTTCTTTGTAGTTAATGATTTTGTAGTTTCTTCACTATCAATCTACTTTCTTTAAAGCATTTTTCTTGGACACCCTTTGAAAAACGAAATGAGTATTTTCCAGCTTCAATTTATTAGCTATTTATTGGAATTTTGGTTATGTGTGTAAAAAATAGATTCTTCAATGATATAGATATAGAAAAAGTCATAGATTTATTTTTTTGAACACGTAATTTTTGTTGGCCTTTTTAGTGCAAATATCATTCCCGCTTAATACCTATGATTTATCGAATCTCTGTACCTAATGAAAGAATTTTTATGATCTTTCTTTCATGGGAGGCTATCCTCTCCTTTTGGTGATTTCATACCATCTAATGAAATTATTGGATTCATTCAAAAGAAAAAAGATCACTTTTAGATAACTTCATAGTGATGCAGCTTAAAAGATGAGTGATCTGAATGTAATTTGGAACTAAATCTATGTTAATGCAGGGGAAAAGTTGCTGAAGGTATAGATTTTGATCGACATTACGGACGATTGGTGATAATGTTCGGTGTTCCTTTTCAATACACATTAAGCAAGTGAGTTTCACATTGTGACTTTCTAATGATAACTTGTGGGACTAAATGACGATTAATCAATGTAATAAATTATTTTTTTCATTGTTTAAATTGTCTTGTTCTTATCACATTTATGATTGTTAATCTAAGAACATAATCCTGTGAGGTTGTGAATTCTTATTTTTTTTAATTGAAAATTGAGTGTGTTCCTTTGTTTTTGGGTGGGTTGGCCAACCTAGGGTGAGGAGGATGATGGTGTGGTTGTTTTTGTTTGGACTTGGTTGTTCTGACTGCGTAGATAATGATTTTATTTTCAGAATTTTGCTTGCTCGGCTGGAGTATTTACGTGAGACATTTCAAATAAAGGAAGGGGACTTTCTAACTTTTGATGCTTTGGTATGGGAAATTTACTCTTCTATCTGTAGTGTTTTTGGTGTATGTTGGAACTAAATGGTTCTGACAATTTGAGCAGAGACAAGCTGCACAATGTGTTGGTCGAGTTATTCGATCGAAGGCTGATTACGGGATGATGATATTTGCTGACAAAAGGTTTGATTTTTTCTTTATTAATGTTACTGGTAGTTTCAATTAATTCCTTTATTACAGAACATATACCGAACAGATATAGACATGCGACATGCCTTTTTTCAAAAAAGTTAATGGCCACCCCTCTTTTCATAGATAATAGTCTTGTCTTCATGAACTTTTGATCATGGAGATCAAATGGCAATCATAGTGGGTGCCTTTTGAAGGTGCGCACCATGTTTAGATGGACCAATGTGGGAATCCTTGACATACACTTCCATGCACTTGAGCTTGCTACGGAAGCACATGTTGCCAGTGAATGTCACACTAGTTGGAAGGTGTAAAATCAGTTTACGAAGCTCCAAGGACATTGTGTTTCGCTTGTGCATCATGCAAGTTGATGCAATTACTAGAGAATAGAAGTTGAGAAGATTTTGAAATATGATGATTTGTAAGTCGAAATTTGTAGTACCTCTACCAGATGTGCTCTTATTATCGTCAGTAGTATCCTTTGAGCAATGTTGGCAGGATGTTATGTTGACATTTGACGATTACCATTTAGCATGAAATTATATTTTCAGTCGGTGATTTTACTTGAGATGTTTGAAAAGATGGTTTAATGGGAAACTACCATGTATTTAAAATACCATGCTATTTGCAATTTATTAGTACAAAATATATTGAAAATGTGACTTTTTCCGTTTCATGCATAGTCTTTGTAATCTTCTTGATTTGTTTTTTTTTCACCTCTATGCAGGTATAGTCGTCATGATAAACGCTCAAAATTGCCTGGATGGATTTTGTCACATTTACGTGATGCACACTTGAATTTGAGCACAGATATGGCTCTGCACATAGCTCGGGAGGTTTGTATTTGTTAACATCCTTATAGCCCAAGATATTGACATAAAGTATTGAATATTTGAAGTTCTCATCTCCCCTTTGAATTTGCAGTTGGAAGCAAAGTTTGGTTTTATTATCTTAATTGCATCTTCTATAAGATCTCTTCCGATGTTTAACTCCCAACTTATTAAGAATGTCTAAACATTTTTGTTTGTCCGTTACTGACAAAATAATTGAATAGAAACTAAATCCGTGGGTGCAGTTCCTTAGGAAGATGGCACAACCCTATGATAAGGCAGGGAGCACTGGTAGAAAGACCTTATTGTCCCAAGAAGACTTAGAAAAGATGTCTGAAGCCAACATGAATGAGATGTTGTATTAAGAATCTCAACACATCAAACGGACTCTTTCTTAGTCCAGAGTGCTGTTTTACATTCTTCTTGAATCCTACTTACCACATTCATCTGCTCGACAATTTGGTTTGATAGTTTGAAAAAGAAATTCCCTTCTGAGATTCTGCCGAAGAGGAAAGAACTCCAATCTAAATGCTGCCAGCTTGTGGAATCGAAAAGGGTTGTTGTTAACCTCTCTAAATGAAAAACCCCAAAAGGAAAATTTTGACAAGTAACTTTATAGTATATGTATATAAATACCTCTTGTTCCCTTTTTGACTTTAAAGTGTTGTTACTCATTTTTTTGGGGTTAAACACTCTTATCTTTCAAGTTTATGGTTGCTGCATTAGTTTACTATTAAAAACTCAACTGATTTTGGATGAGCTTGTTTTGTTAGGAATTGAATTGTTATTTATTTGATTGG

mRNA sequence

GAAAAAGAATAAAATGGGGTGAAAGAGACGGAGGATTTGCTCGGGCAAAGACTCTGTTCGCGTGAAGAACGAGCACCTCTAACCAGACCTCCGAAATCTCCTTGCCGCCACCGCCGCCGCCGCGGTTCTGGTTTTCCGCCGTTATCTCGTCACCGGCGGAGCAAGCGCCATGAAGTTTCAATTAGAGGATGTCACTGTCTACTTTCCTTACGATCACATTTACCCGGAGCAGTACGCTTACATGCTTGAGCTGAAGCGAGCTCTCGACGCCAAGGGACATTGTCTTCTCGAAATGCCCACCGGCACCGGAAAAACCATCGCCCTTCTTTCCCTTATCACCAGCTACGCCCTCTCCAAACCCCAAAACCCTGTCAAGCTCATCTACTGCACTCGGACTGTCCACGAAATGGAGAAGACCCTCGCAGAGCTCAGATTGCTCCATGATTACCAGGTTCAACAGCTTGGACCTCGTGCTCAGATCTTGGCTGTGGGGCTTTCGTCCAGGAAGAATCTGTGTGTCAATCCGAAGGTTTTGGCGTCGGAGAGTCGGGATTCTGTTGACGCTGGTTGTCGCAAGTTGACGGCGAGTTGGGTTAGGGCTATGGCGGCTGAGAATCCCAATGTGCCCACTTGTGAGTTCTTTGAGCAATATGAAAAGGCGGGCTCAAGTGCTGTGTTGCCGCCGGGGGTTTATACGTTGCAGGATCTGAGAGCTTTTGGGACAAAGAAGGGCTGGTGTCCTTACTTCTTGGCACGGCATATGGTACAGTTTGCAAATGTGGTAGTATATAGTTATCAATACTTGCTTGATCCCAAAGTGGCTAGCATTATATCCAAGGAAATGCAGCGAGAATCTGTTGTAGTGTTTGATGAGGCACACAATATTGATAACGTGTGTATTGAAGCCCTTAGTGTTAGTGTGAGGAGGCAGACTATTGAAGGTGCCAGGAGAAATCTCAATAAGATGCGTCAGGAGATTGAGAGGTTCAAGGAAACTGATGCAGGTAGACTGCGTGCAGAATATAACAGGCTGGTGGAGGGTTTGGCACAAAGAGGAAACCTACCTATTTCAGACACGTGGCTCTCAAACCCTGCTCTTCCAGATGATATTTTGAAGGAGGCTGTGCCTGGAAATATACGCCGAGCTGAACACTTTATACATGTATTGCGGAGATTGGTTCAGTATCTTGAAGGACGATTGGACACTGATAATGTTGAGAAGGAAGGGCTTGTAACTTTTGTTGGCTCTATTGGTTCTCAGGCTGGAATTGACCAAAAGACCTTGAAGTTTTGTTACGATCGTCTCCACTCTCTCATGCTGACACTTGAAATTACCGACACAGATGAGTTTTTGCACGTACAGACTATATGTGACTTTGCAACACTCGTTGGAACATATGCACGAGGTTTCTCAATTATAATTGAGCCTGTTGATGAGAGAATGCCGCATATTCCTGACCCGGTACTGCAGCTTAGCTGTCATGATGCCTCACTTGCTATTAAGCCTGTTTTTGAACGATTTCAATCAGTTGTGATTACGTCTGGTACTCTGAGCCCAATTGATCTATACCCTCGTTTGCTCAATTTTAATCCTGTGGTTAGCAGAAGTTTTACAATGTCCTTGACCAGAGACTGCATATGCCCAATGGTTCTCACTCGTGGCAGCGACCAGCTTCCAGTTAGTACTAAATTTGATATGAGAAGCGATCTTGGTGTAGTAAGGAATTATGGGAGGCTCTTGCTCGAGATGGTCTCAGCAGTCCCGGATGGGATAGTATGTTTCTTTGTCAGTTACTCATATATGGATGGCATTGTAAATAGTTGGAATGAAACTGGCATCCTAAAGGAAATAATGCAGCACAAACTTGTGTTCATTGAGACCCAAGATGTCGTGGAGACTACACTGGCTCTTGACAATTACCGGAAGGCTTGTGATTGTGGGAGAGGTGCTGTGTTTTTTTCCGTAGCCAGGGGAAAAGTTGCTGAAGGTATAGATTTTGATCGACATTACGGACGATTGGTGATAATGTTCGGTGTTCCTTTTCAATACACATTAAGCAAAATTTTGCTTGCTCGGCTGGAGTATTTACGTGAGACATTTCAAATAAAGGAAGGGGACTTTCTAACTTTTGATGCTTTGAGACAAGCTGCACAATGTGTTGGTCGAGTTATTCGATCGAAGGCTGATTACGGGATGATGATATTTGCTGACAAAAGGTATAGTCGTCATGATAAACGCTCAAAATTGCCTGGATGGATTTTGTCACATTTACGTGATGCACACTTGAATTTGAGCACAGATATGGCTCTGCACATAGCTCGGGAGTTCCTTAGGAAGATGGCACAACCCTATGATAAGGCAGGGAGCACTGGTAGAAAGACCTTATTGTCCCAAGAAGACTTAGAAAAGATGTCTGAAGCCAACATGAATGAGATGTTGTATTAAGAATCTCAACACATCAAACGGACTCTTTCTTAGTCCAGAGTGCTGTTTTACATTCTTCTTGAATCCTACTTACCACATTCATCTGCTCGACAATTTGGTTTGATAGTTTGAAAAAGAAATTCCCTTCTGAGATTCTGCCGAAGAGGAAAGAACTCCAATCTAAATGCTGCCAGCTTGTGGAATCGAAAAGGGTTGTTGTTAACCTCTCTAAATGAAAAACCCCAAAAGGAAAATTTTGACAAGTAACTTTATAGTATATGTATATAAATACCTCTTGTTCCCTTTTTGACTTTAAAGTGTTGTTACTCATTTTTTTGGGGTTAAACACTCTTATCTTTCAAGTTTATGGTTGCTGCATTAGTTTACTATTAAAAACTCAACTGATTTTGGATGAGCTTGTTTTGTTAGGAATTGAATTGTTATTTATTTGATTGG

Coding sequence (CDS)

ATGAAGTTTCAATTAGAGGATGTCACTGTCTACTTTCCTTACGATCACATTTACCCGGAGCAGTACGCTTACATGCTTGAGCTGAAGCGAGCTCTCGACGCCAAGGGACATTGTCTTCTCGAAATGCCCACCGGCACCGGAAAAACCATCGCCCTTCTTTCCCTTATCACCAGCTACGCCCTCTCCAAACCCCAAAACCCTGTCAAGCTCATCTACTGCACTCGGACTGTCCACGAAATGGAGAAGACCCTCGCAGAGCTCAGATTGCTCCATGATTACCAGGTTCAACAGCTTGGACCTCGTGCTCAGATCTTGGCTGTGGGGCTTTCGTCCAGGAAGAATCTGTGTGTCAATCCGAAGGTTTTGGCGTCGGAGAGTCGGGATTCTGTTGACGCTGGTTGTCGCAAGTTGACGGCGAGTTGGGTTAGGGCTATGGCGGCTGAGAATCCCAATGTGCCCACTTGTGAGTTCTTTGAGCAATATGAAAAGGCGGGCTCAAGTGCTGTGTTGCCGCCGGGGGTTTATACGTTGCAGGATCTGAGAGCTTTTGGGACAAAGAAGGGCTGGTGTCCTTACTTCTTGGCACGGCATATGGTACAGTTTGCAAATGTGGTAGTATATAGTTATCAATACTTGCTTGATCCCAAAGTGGCTAGCATTATATCCAAGGAAATGCAGCGAGAATCTGTTGTAGTGTTTGATGAGGCACACAATATTGATAACGTGTGTATTGAAGCCCTTAGTGTTAGTGTGAGGAGGCAGACTATTGAAGGTGCCAGGAGAAATCTCAATAAGATGCGTCAGGAGATTGAGAGGTTCAAGGAAACTGATGCAGGTAGACTGCGTGCAGAATATAACAGGCTGGTGGAGGGTTTGGCACAAAGAGGAAACCTACCTATTTCAGACACGTGGCTCTCAAACCCTGCTCTTCCAGATGATATTTTGAAGGAGGCTGTGCCTGGAAATATACGCCGAGCTGAACACTTTATACATGTATTGCGGAGATTGGTTCAGTATCTTGAAGGACGATTGGACACTGATAATGTTGAGAAGGAAGGGCTTGTAACTTTTGTTGGCTCTATTGGTTCTCAGGCTGGAATTGACCAAAAGACCTTGAAGTTTTGTTACGATCGTCTCCACTCTCTCATGCTGACACTTGAAATTACCGACACAGATGAGTTTTTGCACGTACAGACTATATGTGACTTTGCAACACTCGTTGGAACATATGCACGAGGTTTCTCAATTATAATTGAGCCTGTTGATGAGAGAATGCCGCATATTCCTGACCCGGTACTGCAGCTTAGCTGTCATGATGCCTCACTTGCTATTAAGCCTGTTTTTGAACGATTTCAATCAGTTGTGATTACGTCTGGTACTCTGAGCCCAATTGATCTATACCCTCGTTTGCTCAATTTTAATCCTGTGGTTAGCAGAAGTTTTACAATGTCCTTGACCAGAGACTGCATATGCCCAATGGTTCTCACTCGTGGCAGCGACCAGCTTCCAGTTAGTACTAAATTTGATATGAGAAGCGATCTTGGTGTAGTAAGGAATTATGGGAGGCTCTTGCTCGAGATGGTCTCAGCAGTCCCGGATGGGATAGTATGTTTCTTTGTCAGTTACTCATATATGGATGGCATTGTAAATAGTTGGAATGAAACTGGCATCCTAAAGGAAATAATGCAGCACAAACTTGTGTTCATTGAGACCCAAGATGTCGTGGAGACTACACTGGCTCTTGACAATTACCGGAAGGCTTGTGATTGTGGGAGAGGTGCTGTGTTTTTTTCCGTAGCCAGGGGAAAAGTTGCTGAAGGTATAGATTTTGATCGACATTACGGACGATTGGTGATAATGTTCGGTGTTCCTTTTCAATACACATTAAGCAAAATTTTGCTTGCTCGGCTGGAGTATTTACGTGAGACATTTCAAATAAAGGAAGGGGACTTTCTAACTTTTGATGCTTTGAGACAAGCTGCACAATGTGTTGGTCGAGTTATTCGATCGAAGGCTGATTACGGGATGATGATATTTGCTGACAAAAGGTATAGTCGTCATGATAAACGCTCAAAATTGCCTGGATGGATTTTGTCACATTTACGTGATGCACACTTGAATTTGAGCACAGATATGGCTCTGCACATAGCTCGGGAGTTCCTTAGGAAGATGGCACAACCCTATGATAAGGCAGGGAGCACTGGTAGAAAGACCTTATTGTCCCAAGAAGACTTAGAAAAGATGTCTGAAGCCAACATGAATGAGATGTTGTATTAA

Protein sequence

MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYALSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPKVLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGSIGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEPVDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFVSYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY

Homology

[Close]

BLAST of IVF0004010 vs. ExPASy Swiss-Prot
Match: Q8W4M7 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidopsis thaliana OX=3702 GN=XPD PE=1 SV=1)

HSP 1 Score: 1335.1 bits (3454), Expect = 0.0e+00
Identity = 650/758 (85.75%), Postives = 707/758 (93.27%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           M F++EDVTVYFPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQV+ LG +A+ILA+GLSSRKNLCVN K
Sbjct: 61  LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLA+E+RDSVDA CRK TASWVRA++ ENPNV  C+FFE YEKA  +A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFG  +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA  ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRR T+EGA RNLNK+RQEI+RFK TDAGRLRAEYNRLVEGLA RG+L  
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
            D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDT+NVEKE  V+FV S
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           + SQAGI+QKTLKFCYDRL SLMLTLEITDTDEFL +QT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAG+ GRKTLL+QEDLEKM+E  + +M Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758

[Close]

BLAST of IVF0004010 vs. ExPASy Swiss-Prot
Match: A6QLJ0 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taurus OX=9913 GN=ERCC2 PE=2 SV=1)

HSP 1 Score: 876.7 bits (2264), Expect = 1.9e-253
Identity = 422/746 (56.57%), Postives = 559/746 (74.93%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + VYFPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
            + P    KLIYC+RTV E+EK + ELR L  +  +Q G +   L + LSSRKNLC++P+
Sbjct: 61  RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA    + ++P C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL  +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           +D  L+NP LPD++LKEAVPG+IR AEHF+  LRRL++Y++ RL   +V +E    F+  
Sbjct: 301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEI+D  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +P+L  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDGIV FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL DA+LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E LE
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLE 745

[Close]

BLAST of IVF0004010 vs. ExPASy Swiss-Prot
Match: Q60452 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetulus griseus OX=10029 GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 874.4 bits (2258), Expect = 9.4e-253
Identity = 420/746 (56.30%), Postives = 560/746 (75.07%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + VYFPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
            + P    KLIYC+RTV E+EK + ELR L  +  QQ G +   L + LSSRKNLC++P+
Sbjct: 61  RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA   ++ ++P C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL+ +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           +D  L+NP LPD++L+EAVPG+IR AEHF+  LRRL++Y++ RL   +V +E    F+  
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEI D  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +P+L  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDGIV FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL D++LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E L+
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLQ 745

[Close]

BLAST of IVF0004010 vs. ExPASy Swiss-Prot
Match: P18074 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sapiens OX=9606 GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 873.6 bits (2256), Expect = 1.6e-252
Identity = 421/746 (56.43%), Postives = 559/746 (74.93%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + VYFPYD+IYPEQ++YM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
            + P    KLIYC+RTV E+EK + ELR L ++  +Q G +   L + LSSRKNLC++P+
Sbjct: 61  RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA    + ++P C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL  +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           +D  L+NP LPD++L+EAVPG+IR AEHF+  LRRL++Y++ RL   +V +E    F+  
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEITD  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +P+L  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDGIV FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL DA+LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E LE
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLE 745

[Close]

BLAST of IVF0004010 vs. ExPASy Swiss-Prot
Match: O08811 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musculus OX=10090 GN=Ercc2 PE=1 SV=2)

HSP 1 Score: 873.6 bits (2256), Expect = 1.6e-252
Identity = 421/746 (56.43%), Postives = 560/746 (75.07%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + VYFPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
            + P    KLIYC+RTV E+EK + ELR L  +  QQ G +   L + LSSRKNLC++P+
Sbjct: 61  RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA   ++ ++P C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL+ +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           +D  L+NP LPD++L+EAVPG+IR AEHF+  LRRL++Y++ RL   +V +E    F+  
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEI D  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +PVL  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDGIV FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL D++LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E L+
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLQ 745

[Close]

BLAST of IVF0004010 vs. ExPASy TrEMBL
Match: A0A1S3BRE4 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis melo OX=3656 GN=LOC103492682 PE=3 SV=1)

HSP 1 Score: 1515.7 bits (3923), Expect = 0.0e+00
Identity = 757/758 (99.87%), Postives = 757/758 (99.87%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. ExPASy TrEMBL
Match: A0A0A0K5Q0 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis sativus OX=3659 GN=Csa_7G390040 PE=3 SV=1)

HSP 1 Score: 1510.0 bits (3908), Expect = 0.0e+00
Identity = 753/758 (99.34%), Postives = 757/758 (99.87%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNP 
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENP+VPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDT+NVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAGS+GRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. ExPASy TrEMBL
Match: A0A1S4DZF6 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis melo OX=3656 GN=LOC103492682 PE=3 SV=1)

HSP 1 Score: 1508.8 bits (3905), Expect = 0.0e+00
Identity = 757/765 (98.95%), Postives = 757/765 (98.95%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIARE- 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIARE 
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREK 720

Query: 721 ------FLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
                 FLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LNPWVQFLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 765

[Close]

BLAST of IVF0004010 vs. ExPASy TrEMBL
Match: A0A6J1GNB9 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbita moschata OX=3662 GN=LOC111456016 PE=3 SV=1)

HSP 1 Score: 1501.9 bits (3887), Expect = 0.0e+00
Identity = 748/758 (98.68%), Postives = 755/758 (99.60%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQ+GPRAQILAVGLSSRKNLCVNP 
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDT+NVEKEGLVTFV S
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRL+SLMLTLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAGS+GRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. ExPASy TrEMBL
Match: A0A6J1JQ08 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbita maxima OX=3661 GN=LOC111488815 PE=3 SV=1)

HSP 1 Score: 1501.5 bits (3886), Expect = 0.0e+00
Identity = 748/758 (98.68%), Postives = 755/758 (99.60%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQ+GPRAQILAVGLSSRKNLCVNP 
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDT+NVEKEG+VTFV S
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGIVTFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRL+SLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAGS+GRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. NCBI nr
Match: XP_008451374.1 (PREDICTED: DNA repair helicase XPD isoform X2 [Cucumis melo])

HSP 1 Score: 1508 bits (3903), Expect = 0.0
Identity = 757/758 (99.87%), Postives = 757/758 (99.87%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
           LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. NCBI nr
Match: XP_011659313.1 (general transcription and DNA repair factor IIH helicase subunit XPD [Cucumis sativus] >KGN44823.1 hypothetical protein Csa_016833 [Cucumis sativus])

HSP 1 Score: 1502 bits (3888), Expect = 0.0
Identity = 753/758 (99.34%), Postives = 757/758 (99.87%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNP 
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENP+VPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDT+NVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
           LRKMAQPYDKAGS+GRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. NCBI nr
Match: XP_016901100.1 (PREDICTED: DNA repair helicase XPD isoform X1 [Cucumis melo])

HSP 1 Score: 1501 bits (3885), Expect = 0.0
Identity = 757/765 (98.95%), Postives = 757/765 (98.95%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIARE- 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIARE 
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREK 720

Query: 721 ------FLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
                 FLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LNPWVQFLRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 765

[Close]

BLAST of IVF0004010 vs. NCBI nr
Match: XP_038898338.1 (general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 [Benincasa hispida])

HSP 1 Score: 1500 bits (3883), Expect = 0.0
Identity = 751/758 (99.08%), Postives = 757/758 (99.87%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYD IYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDQIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEI+RFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIDRFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDT+NVEKEGLVTFVGS
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLH+QTICDFATL+GTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
           LRKMAQPYDKAGS+G+KTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. NCBI nr
Match: XP_023548795.1 (DNA repair helicase XPD [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1494 bits (3869), Expect = 0.0
Identity = 749/758 (98.81%), Postives = 755/758 (99.60%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQ+GPRAQILAVGLSSRKNLCVNP 
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPS 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDT+NVEKEGLVTFV S
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRL+SLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
           LRKMAQPYDKAGS+GRKTLLSQEDLEKMSEANMNEMLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]

BLAST of IVF0004010 vs. TAIR 10
Match: AT1G03190.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 1335.1 bits (3454), Expect = 0.0e+00
Identity = 650/758 (85.75%), Postives = 707/758 (93.27%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           M F++EDVTVYFPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQV+ LG +A+ILA+GLSSRKNLCVN K
Sbjct: 61  LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLA+E+RDSVDA CRK TASWVRA++ ENPNV  C+FFE YEKA  +A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFG  +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA  ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRR T+EGA RNLNK+RQEI+RFK TDAGRLRAEYNRLVEGLA RG+L  
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
            D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDT+NVEKE  V+FV S
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           + SQAGI+QKTLKFCYDRL SLMLTLEITDTDEFL +QT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAG+ GRKTLL+QEDLEKM+E  + +M Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758

[Close]

BLAST of IVF0004010 vs. TAIR 10
Match: AT1G03190.2 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 1335.1 bits (3454), Expect = 0.0e+00
Identity = 650/758 (85.75%), Postives = 707/758 (93.27%), Query Frame = 0


Query: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           M F++EDVTVYFPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
           LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQV+ LG +A+ILA+GLSSRKNLCVN K
Sbjct: 61  LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
           VLA+E+RDSVDA CRK TASWVRA++ ENPNV  C+FFE YEKA  +A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFG  +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA  ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRR T+EGA RNLNK+RQEI+RFK TDAGRLRAEYNRLVEGLA RG+L  
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
            D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDT+NVEKE  V+FV S
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
           + SQAGI+QKTLKFCYDRL SLMLTLEITDTDEFL +QT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
           F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720

Query: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 759
           LRKMAQPYDKAG+ GRKTLL+QEDLEKM+E  + +M Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758

[Close]

BLAST of IVF0004010 vs. TAIR 10
Match: AT1G20720.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 167.2 bits (422), Expect = 5.2e-41
Identity = 196/837 (23.42%), Postives = 335/837 (40.02%), Query Frame = 0


Query: 3   FQLEDVTVYFPYDHIYPEQYAYMLELKRALD---AKGHC--LLEMPTGTGKTIALLSLIT 62
           +Q+  + V FPY   Y  Q A+M  +   LD     GHC  LLE PTGTGK+++LL  + 
Sbjct: 27  YQIGGLQVEFPYQP-YGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVL 86

Query: 63  SYA----------------------------------------------LSKPQNPVKLI 122
           ++                                               + K +   K  
Sbjct: 87  AWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAETATKKR 146

Query: 123 YCTRTVHEMEKTLAEL-RLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPKVLASESRDSV 182
               T++   +T +++ +++ +Y  ++ G R  +    L+SRK+ C N  VL    +D+V
Sbjct: 147 TKIPTIYYASRTHSQITQVIREY--RKTGYRVPMAV--LASRKHYCTNRHVL---GKDNV 206

Query: 183 DAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDLRAFGTKKGWC 242
           D  CR L         +E  NV         +  G +      V+ ++DL   G     C
Sbjct: 207 DDECRLLLKDKANIQCSEFKNVNKITSHPSLQPRGHNE-----VHDIEDLVKVGKNVRGC 266

Query: 243 PYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVS 302
           PYF +  M + A +V   Y Y+++P + + +  ++ + ++++FDEAHN++++  EA S++
Sbjct: 267 PYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIAREAGSIN 326

Query: 303 VRRQTIEGARRNLNKMR----QEIERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLS 362
           +   T+   +  L +M        +   E   G L +   R  + LA+R       +W  
Sbjct: 327 LEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEG-LISWIGRKKDSLAKRDFQHYFSSWTG 386

Query: 363 NPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGSIGSQAG 422
                D  L+E    NI R E F  +L    + +     +   E E  + ++      +G
Sbjct: 387 -----DKALRELEESNITR-ECFPILLECFTKAIR---TSKEAEMESDMLYL------SG 446

Query: 423 IDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEPVDERMP 482
           I   TL+  +  L            D  L +Q         GT+   FS           
Sbjct: 447 ISVLTLEELFSSLTYFFSRNGSHILDYQLGLQRSTKRGDPSGTWTHTFS----------- 506

Query: 483 HIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLT 542
                   L C + ++  K + +   SV++TSGTLSP++      +F+  +   F  SL 
Sbjct: 507 --------LWCMNPAVVFKDLADISLSVILTSGTLSPMN------SFSSELGMQFGTSLE 566

Query: 543 RDCICPM-------VLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFF 602
              +           ++ G    P++  +            G+ L E+ + VP G + FF
Sbjct: 567 APHVIDPNMQVWAGAISNGPSNYPLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFF 626

Query: 603 VSYSYMDGIVNSWNETGILKEIMQHKLVFIE----TQDVVETTL------------ALDN 662
            SY  M+ +   W ET     +   K +F+E     QD  ++ L             +  
Sbjct: 627 PSYKLMEKLCMRWRETEQWSRLCLKKDLFVEPRGGAQDEFDSVLKGYYDSIRGKNKIIGR 686

Query: 663 YRKACDCG-----------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKI 722
            R+A   G           +GA F +V RGKV+EGIDF     R VI+ G+PF   L  I
Sbjct: 687 NRRAKKAGPIKTETQDDSKKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFP-NLHDI 746

Query: 723 LLARLEYLRETFQIKE-----GDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRH 745
            +   +   +T++  +      ++    A R   Q  GR IR + DYG +IF D+RY   
Sbjct: 747 QVGLKKKYNDTYKSSKSLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYKEQ 798

[Close]

BLAST of IVF0004010 vs. TAIR 10
Match: AT1G79950.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 164.5 bits (415), Expect = 3.4e-40
Identity = 165/760 (21.71%), Postives = 318/760 (41.84%), Query Frame = 0


Query: 3   FQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 62
           + +  + V FP++  Y  Q  YM  +  +L  K H LLE PTGTGKT+ LL    ++   
Sbjct: 49  YSIRGINVEFPFE-AYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWRKS 108

Query: 63  ---------------ALSKPQNPVK------------LIYCTRTVHEMEKTLAELRLLHD 122
                            S    P+             ++Y +RT  ++ + + EL+    
Sbjct: 109 LGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELK---- 168

Query: 123 YQVQQLGPRAQILAVGLSSRKNLCVNPKVLASESRDSVDAGCRKLTASWVRAMAAENPNV 182
               +   R +++ +G  SR+ LCVN +V +   +   +A C+ L     +        +
Sbjct: 169 ----RSSYRPKMVVLG--SREQLCVNEEVNSLRGKALTNA-CQYLCKKRGKRQCNHFNRL 228

Query: 183 PTCEFFEQYEKAGSSAVLPPGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQYL 242
           P  ++ +     G   V       ++DL   G   G CPY++ R + +  +++   Y YL
Sbjct: 229 P--DYLKHNPHIGDEPV------DIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYL 288

Query: 243 LDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQ-EIE 302
           +       + K     SV++FDEAHN++++C ++ S  +    +        +  Q    
Sbjct: 289 ISNGYRKFL-KVNWTNSVLIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAA 348

Query: 303 RFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLSNPALPDDILKEAVPGNIRRAEHFIH 362
           R    +   +  E   +++GL  +              L + I K  +P   +R E F  
Sbjct: 349 RRDSLNDVSINPENFAILKGLLLK--------------LQELISKVPIP---KRDEGF-- 408

Query: 363 VLRRLVQYLEGRLDTDNVEKEGLVTFVGSIGSQAGIDQKTLKFCYDRLHSLMLTLEITDT 422
              +   Y+   L + N+  E     +G++  +A +  +  K             + T T
Sbjct: 409 --TKPGPYIYEMLKSLNITHETAPKLIGTV-EEAAVFLEEEK-------------QRTAT 468

Query: 423 DEFLHVQTICDFATLV-----GTYARGFSIIIEPVDERMPHI----PDPVLQLSCHDASL 482
           +    ++ I D   L+       +A  + + ++ +++    +        L   C    +
Sbjct: 469 NAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLSWWCFSPGI 528

Query: 483 AIKPVFER-FQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQ 542
            +  + ++   S+++TSGTLSP+D   + L  +  +       ++ + +   V++ G   
Sbjct: 529 TMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVVSTGPSG 588

Query: 543 LPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFVSYSYMDGIVNSW------NET 602
             +++ +  R      +  G  ++     VP+G++ FF SY  MD  +  W      N  
Sbjct: 589 YVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNSM 648

Query: 603 GILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRH 662
            + + I + K   IE +D      A+ ++ +        G VFF+V RGKV+EG+DF   
Sbjct: 649 TVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEGLDFADG 708

Query: 663 YGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKE-----------GDFLTFDALRQAAQ 703
            GR V++ G+P+       +  + E+L E  Q+ +             + + +A R   Q
Sbjct: 709 AGRAVVITGLPYARVTDPRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEAARAVNQ 752

[Close]

BLAST of IVF0004010 vs. TAIR 10
Match: AT1G79890.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 150.6 bits (379), Expect = 5.1e-36
Identity = 158/700 (22.57%), Postives = 285/700 (40.71%), Query Frame = 0


Query: 65  QNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPKVLAS 124
           Q   K+ +C+RT  ++ + + ELR        +     ++  V L SRKNLC+N  VL  
Sbjct: 180 QGGFKVFFCSRTHSQLSQFVKELR--------KTVFAKKLKVVCLGSRKNLCINEDVLKL 239

Query: 125 ESRDSVDAGC---RKLTASWVRAMAAENPNVP--------TCEFFEQY--EKAGSSAVLP 184
            +   ++  C   +K   S V        NV          C    ++  ++   +    
Sbjct: 240 GNVTRINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQ 299

Query: 185 PGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVV 244
                ++DL   G +   CPY+ +R M   A++V+  YQ LL       +   + + SVV
Sbjct: 300 QEAMDIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVV 359

Query: 245 VFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEG 304
           + DEAHN+ +  +      +    +E    ++      + RF+    G     Y +++  
Sbjct: 360 IIDEAHNLADTLLSMHDAKLTVSQLEDIHCSIESY---LGRFQNL-LGAGNRRYIQIMLI 419

Query: 305 LAQRGNLPI-SDTWLS--NPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDN 364
           L +    P+ SD  LS  N  L  +   ++ P        +  +           L+ DN
Sbjct: 420 LTRAFLKPLASDRNLSSVNVGLDTENPSKSKPCGACSMAIYDFLF---------SLNIDN 479

Query: 365 VEKEGLVTFVGSIGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVG 424
           +    L+ ++     ++ I  K     Y    + ML  +    +E   + +   F+ ++ 
Sbjct: 480 INLVKLLAYI----KESNIIHKVSG--YGERVAAMLQKDPVAHEEMSKLTSFRAFSDMLV 539

Query: 425 TYARGFS---IIIEPVDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPID 484
                     III              ++      +     V +   +V++  GTL PI+
Sbjct: 540 ALTNNNGDGRIIISRTSSSTSGQHGGYIKYVMLTGAKLFSEVVDEAHAVILAGGTLQPIE 599

Query: 485 -----LYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNY 544
                L+P L + N +   S +  +  + I P+ ++ G            RS +G+++  
Sbjct: 600 ETRERLFPWLPS-NQLQFFSCSHIVPPESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQEL 659

Query: 545 GRLLLEMVSAVPDGIVCFFVSYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLA 604
           G L+  +V+ VP+GI+ FF S+ Y   +  +W+ +GIL+ I++ K VF E +   E    
Sbjct: 660 GLLMSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGILRRIVKKKRVFREPRKNTEVEAV 719

Query: 605 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL 664
           L +Y++A +  RGA+  +V  GKV+EGI+F     R V+M G+P+       LL R++++
Sbjct: 720 LRDYKEAIESERGAIMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERIKHI 779

Query: 665 R---ETFQIKEGDFLTFDA----------------------------LRQAAQCVGRVIR 702
               ++  IK    L  D+                            ++   Q +GR IR
Sbjct: 780 EGRADSDSIKPSVTLVDDSYYSGDVQAGFGVLKSCKRRGKEYYENLCMKAVNQSIGRAIR 839

The following BLAST results are available for this feature:

BLAST of IVF0004010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4M7	0.0e+00	85.75	General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidop...	[more]
A6QLJ0	1.9e-253	56.57	General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taur...	[more]
Q60452	9.4e-253	56.30	General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetul...	[more]
P18074	1.6e-252	56.43	General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sap...	[more]
O08811	1.6e-252	56.43	General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musc...	[more]

BLAST of IVF0004010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRE4	0.0e+00	99.87	General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ...	[more]
A0A0A0K5Q0	0.0e+00	99.34	General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ...	[more]
A0A1S4DZF6	0.0e+00	98.95	General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ...	[more]
A0A6J1GNB9	0.0e+00	98.68	General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbit...	[more]
A0A6J1JQ08	0.0e+00	98.68	General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbit...	[more]

BLAST of IVF0004010 vs. NCBI nr


Match Name	Identity	Description
XP_008451374.1	99.87	PREDICTED: DNA repair helicase XPD isoform X2 [Cucumis melo]	[more]
XP_011659313.1	99.34	general transcription and DNA repair factor IIH helicase subunit XPD [Cucumis sa...	[more]
XP_016901100.1	98.95	PREDICTED: DNA repair helicase XPD isoform X1 [Cucumis melo]	[more]
XP_038898338.1	99.08	general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 ...	[more]
XP_023548795.1	98.81	DNA repair helicase XPD [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0004010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03190.1	0.0e+00	85.75	RAD3-like DNA-binding helicase protein	[more]
AT1G03190.2	0.0e+00	85.75	RAD3-like DNA-binding helicase protein	[more]
AT1G20720.1	5.2e-41	23.42	RAD3-like DNA-binding helicase protein	[more]
AT1G79950.1	3.4e-40	21.71	RAD3-like DNA-binding helicase protein	[more]
AT1G79890.1	5.1e-36	22.57	RAD3-like DNA-binding helicase protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 256..276
None	No IPR available	GENE3D	1.10.275.40		coord: 329..439 e-value: 5.8E-6 score: 27.6
None	No IPR available	CDD	cd18788	SF2_C_XPD	coord: 488..684 e-value: 1.93454E-65 score: 212.464
IPR001945	RAD3/XPD family	PRINTS	PR00852	XRODRMPGMNTD	coord: 372..394 score: 52.8 coord: 273..292 score: 62.86 coord: 333..354 score: 39.61 coord: 636..658 score: 73.29 coord: 8..25 score: 70.63 coord: 308..326 score: 70.68 coord: 403..421 score: 74.44 coord: 707..727 score: 58.5 coord: 492..509 score: 54.76
IPR001945	RAD3/XPD family	PANTHER	PTHR11472:SF1	GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPD	coord: 1..748
IPR006554	Helicase-like, DEXD box c2 type	SMART	SM00488	deadxpd	coord: 8..280 e-value: 2.1E-131 score: 452.5
IPR006555	ATP-dependent helicase, C-terminal	SMART	SM00491	Cxpdneu3	coord: 542..686 e-value: 8.4E-71 score: 251.2
IPR006555	ATP-dependent helicase, C-terminal	PFAM	PF13307	Helicase_C_2	coord: 524..697 e-value: 8.2E-42 score: 143.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 16..286 e-value: 4.9E-52 score: 178.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 440..472 e-value: 5.8E-6 score: 27.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 501..698 e-value: 4.0E-51 score: 175.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 31..678
IPR010643	Helical and beta-bridge domain	PFAM	PF06777	HBB	coord: 270..412 e-value: 1.1E-24 score: 87.1
IPR013020	ATP-dependent helicase Rad3/Chl1-like	TIGRFAM	TIGR00604	TIGR00604	coord: 9..708 e-value: 3.4E-239 score: 794.1
IPR010614	DEAD2	PFAM	PF06733	DEAD_2	coord: 72..255 e-value: 1.9E-51 score: 174.1
IPR045028	Helicase superfamily 1/2, DinG/Rad3-like	PANTHER	PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	coord: 1..748
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 229..238
IPR014013	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	PROSITE	PS51193	HELICASE_ATP_BIND_2	coord: 7..285 score: 39.276581

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004010.1	IVF0004010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000717	nucleotide-excision repair, DNA duplex unwinding
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0045951	positive regulation of mitotic recombination
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009411	response to UV
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0033683	nucleotide-excision repair, DNA incision
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding