IVF0003780 (gene) Melon (IVF77) v1

Overview
NameIVF0003780
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr09: 5310730 .. 5311104 (-)
RNA-Seq ExpressionIVF0003780
SyntenyIVF0003780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGAAAAAACGTCGGAAGAGGCATTCCCGATGCCGCGTCATGCGTCGGCATAAGGTCTTTTGAGAGAGAAACTCCCGATGCCACTTTGGTCGATGCATGTCACAGCGTCGGGAGAGGCATTTCCGACGCCTTGTTGGTACGGCGTCGGGAATGCCTCTTCCGATTCATGTCTCCCGACGTTGTTCCCGAGGTTGTGAAAAACGTTGGCATATCCTTTCCCAACGTTTTTGTGCGTCGGGAGTATCCTTGTCTCTTGCAGTGTTTGGAATTGTTGCCCATGTTTTGCAAATATATTAGTAAAGGATACCTACATTTAAACCATTTTCATGCAAAACACGAATGGAGGGAAGATCTTGGAGGGGTGGGGTAA

mRNA sequence

ATGTCGGGAAAAAACGTCGGAAGAGGCATTCCCGATGCCGCGTCATGCGTCGGCATAAGGTCTTTTGAGAGAGAAACTCCCGATGCCACTTTGGTCGATGCATGTCACAGCGTCGGGAGAGGCATTTCCGACGCCTTGTTGGTACGGCGTCGGGAATGCCTCTTCCGATTCATGTCTCCCGACGTTGTTCCCGAGGTTGTGAAAAACGTTGGCATATCCTTTCCCAACGTTTTTGTGCGTCGGGAGTATCCTTGTCTCTTGCAGTGTTTGGAATTGTTGCCCATGTTTTGCAAATATATTAGTAAAGGATACCTACATTTAAACCATTTTCATGCAAAACACGAATGGAGGGAAGATCTTGGAGGGGTGGGGTAA

Coding sequence (CDS)

ATGTCGGGAAAAAACGTCGGAAGAGGCATTCCCGATGCCGCGTCATGCGTCGGCATAAGGTCTTTTGAGAGAGAAACTCCCGATGCCACTTTGGTCGATGCATGTCACAGCGTCGGGAGAGGCATTTCCGACGCCTTGTTGGTACGGCGTCGGGAATGCCTCTTCCGATTCATGTCTCCCGACGTTGTTCCCGAGGTTGTGAAAAACGTTGGCATATCCTTTCCCAACGTTTTTGTGCGTCGGGAGTATCCTTGTCTCTTGCAGTGTTTGGAATTGTTGCCCATGTTTTGCAAATATATTAGTAAAGGATACCTACATTTAAACCATTTTCATGCAAAACACGAATGGAGGGAAGATCTTGGAGGGGTGGGGTAA

Protein sequence

MSGKNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVVPEVVKNVGISFPNVFVRREYPCLLQCLELLPMFCKYISKGYLHLNHFHAKHEWREDLGGVG
Homology
BLAST of IVF0003780 vs. ExPASy TrEMBL
Match: A0A5D3CX81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00790 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 2   SGKNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMS 60
           SG NVG GI DAA C GIRS    + DAT+ DAC+ +GR ISD +LVRRRECL R  S
Sbjct: 268 SGNNVGSGITDAACCFGIRSIGNASSDATMADACYGIGRDISDVVLVRRRECLSRRFS 325

BLAST of IVF0003780 vs. ExPASy TrEMBL
Match: A0A5D3CRC0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00660 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 12  DAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVVPEVVKNVG 71
           D  +  GIR   R   DA+       VG+G  DA LVRRRE L R +SPDV+P+VV  VG
Sbjct: 113 DLQTASGIRFSRRRHADAS-----PGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVG 172

Query: 72  ISFP-------NVFVRREYPCLL 88
           ISFP       +VFVRREYP LL
Sbjct: 173 ISFPDVLCIFADVFVRREYPRLL 190

BLAST of IVF0003780 vs. ExPASy TrEMBL
Match: A0A5D3BBD4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00140 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 4   KNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVV 63
           K+V RG+PD    VG    ER  PD     + + VGR I DA+LV  +E LFR  S DV 
Sbjct: 621 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDVR 680

Query: 64  PEVVKNVGISFPNVF 79
           P+  +N GISF +VF
Sbjct: 681 PDAAENFGISFSDVF 695

BLAST of IVF0003780 vs. ExPASy TrEMBL
Match: A0A5A7VPX1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00930 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 4   KNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVV 63
           K+V RG+PD    VG    ER  PD     + + VGR I DA+LV  +E LFR  S DV 
Sbjct: 586 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDVR 645

Query: 64  PEVVKNVGISFPNVF 79
           P+  +N GISF +VF
Sbjct: 646 PDAAENFGISFSDVF 660

BLAST of IVF0003780 vs. ExPASy TrEMBL
Match: A0A5D3E1C4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00160 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 31 LVDACHSVGRGISDALLVRRRECLFRFMSPDVVPEVVKNVGISFP 76
          LVDACH VG+GI D +LVRRRECL + +SPD + +VVKNV  S P
Sbjct: 4  LVDACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

BLAST of IVF0003780 vs. NCBI nr
Match: KAA0049602.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 7.18e-13
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 2   SGKNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMS 59
           SG NVG GI DAA C GIRS    + DAT+ DAC+ +GR ISD +LVRRRECL R  S
Sbjct: 268 SGNNVGSGITDAACCFGIRSIGNASSDATMADACYGIGRDISDVVLVRRRECLSRRFS 325

BLAST of IVF0003780 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.33e-11
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 12  DAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVVPEVVKNVG 71
           D  +  GIR   R   DA+       VG+G  DA LVRRRE L R +SPDV+P+VV  VG
Sbjct: 113 DLQTASGIRFSRRRHADAS-----PGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVG 172

Query: 72  ISFPNV-------FVRREYPCLL 87
           ISFP+V       FVRREYP LL
Sbjct: 173 ISFPDVLCIFADVFVRREYPRLL 190

BLAST of IVF0003780 vs. NCBI nr
Match: KAA0067621.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 4.20e-10
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 4   KNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVV 63
           K+V RG+PD    VG    ER  PD     + + VGR I DA+LV  +E LFR  S DV 
Sbjct: 586 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDVR 645

Query: 64  PEVVKNVGISFPNVF 78
           P+  +N GISF +VF
Sbjct: 646 PDAAENFGISFSDVF 660

BLAST of IVF0003780 vs. NCBI nr
Match: TYJ97142.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 4.22e-10
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 4   KNVGRGIPDAASCVGIRSFERETPDATLVDACHSVGRGISDALLVRRRECLFRFMSPDVV 63
           K+V RG+PD    VG    ER  PD     + + VGR I DA+LV  +E LFR  S DV 
Sbjct: 621 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDVR 680

Query: 64  PEVVKNVGISFPNVF 78
           P+  +N GISF +VF
Sbjct: 681 PDAAENFGISFSDVF 695

BLAST of IVF0003780 vs. NCBI nr
Match: TYK29255.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.20e-09
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 31 LVDACHSVGRGISDALLVRRRECLFRFMSPDVVPEVVKNVGISFP 75
          LVDACH VG+GI D +LVRRRECL + +SPD + +VVKNV  S P
Sbjct: 4  LVDACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CX811.0e-1062.07Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
A0A5D3CRC02.2e-0851.81CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BBD44.8e-0846.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7VPX14.8e-0846.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3E1C44.1e-0764.44CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0049602.17.18e-1362.07reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcripta... [more]
TYK14413.11.33e-1151.81CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0067621.14.20e-1046.67CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYJ97142.14.22e-1046.67CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK29255.13.20e-0964.44CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003780.1IVF0003780.1mRNA