IVF0002626 (gene) Melon (IVF77) v1

Overview


Name	IVF0002626
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PHD finger protein MALE STERILITY 1
Location	chr10: 10310716 .. 10311066 (+)
RNA-Seq Expression	IVF0002626
Synteny	IVF0002626

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGGCAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCAAATATTATGAATCTTTTGTAG

mRNA sequence

ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGGCAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCAAATATTATGAATCTTTTGTAG

Coding sequence (CDS)

ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGGCAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCAAATATTATGAATCTTTTGTAG

Protein sequence

MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL

Homology

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BLAST of IVF0002626 vs. ExPASy Swiss-Prot
Match: Q9FMS5 (PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 6   IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRC 65
           I KKR+R   G  RVF  K+FGE+GHPAE+    FR+N+  LL FG +ES    G     
Sbjct: 13  IPKKRKR---GESRVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS---- 72

Query: 66  WSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           WSF+L++QR P P++V+LFV+EE +E+    + +C  CQYVG
Sbjct: 73  WSFQLEIQRNPNPLYVLLFVVEEPIEAS--LNLRCNHCQYVG 105

[Close]

BLAST of IVF0002626 vs. ExPASy Swiss-Prot
Match: Q67V61 (PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 6   IGKKRRRGGGGGERVFGFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECSGEGFR 65
           +G  RRR    GE +F F++F + G+PA   G   FR+NV  LLGF   E+G   GE  +
Sbjct: 9   LGSSRRR--KRGEMLFRFEAFCQPGYPANFAGAGGFRDNVRTLLGFAHLEAG-VHGE-TK 68

Query: 66  CWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           CWSF+L++ R PP  V LFV+EE V +     RQC  C+++G
Sbjct: 69  CWSFQLELHRHPPTVVRLFVVEEEVAAS--PHRQCHLCRHIG 104

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BLAST of IVF0002626 vs. ExPASy TrEMBL
Match: A0A5D3CR48 (PHD finger protein MALE STERILITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00700 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL 117
           GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL
Sbjct: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL 116

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BLAST of IVF0002626 vs. ExPASy TrEMBL
Match: A0A0A0KPP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G291670 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.9e-55
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS E
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNL 116
           GFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQCQYVGK+SKANIM +
Sbjct: 61  GFRCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVGKISKANIMKI 115

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BLAST of IVF0002626 vs. ExPASy TrEMBL
Match: A0A1S3C4G3 (PHD finger protein MALE STERILITY 1 OS=Cucumis melo OX=3656 GN=LOC103496772 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.9e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG
Sbjct: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105

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BLAST of IVF0002626 vs. ExPASy TrEMBL
Match: A0A6J1DTQ4 (PHD finger protein MALE STERILITY 1 OS=Momordica charantia OX=3673 GN=LOC111023034 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 4   DVIGKKRRRG-GGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGF 63
           + IG+KRRRG GGGGE+VF FKSFGENG+P E VGRFRENV ALLGFG+WESG+C+G G 
Sbjct: 3   EAIGRKRRRGAGGGGEKVFRFKSFGENGYPVEFVGRFRENVVALLGFGRWESGDCAG-GL 62

Query: 64  RCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           + WSF+LQVQRQPP H+V+FV+EE VE+   A R CK CQYVG
Sbjct: 63  QSWSFQLQVQRQPPFHIVMFVVEEPVEAAPPAGRHCKDCQYVG 104

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BLAST of IVF0002626 vs. ExPASy TrEMBL
Match: A0A6J1KWF9 (PHD finger protein MALE STERILITY 1 OS=Cucurbita maxima OX=3661 GN=LOC111498812 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 71/112 (63.39%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 4   DVIGKKRRRGG----------GGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWE 63
           D+I  KRRRG             G+RVF FKSFG+NGHP + +G F ENVEALLGFG WE
Sbjct: 3   DLIAGKRRRGAAASSTSTSSTSSGDRVFRFKSFGKNGHPTQFLGCFWENVEALLGFGHWE 62

Query: 64  SGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           +GECS   FRCWSFRLQVQR PP HVVLFV+EE  E+ T  +R CKQCQYVG
Sbjct: 63  TGECSNR-FRCWSFRLQVQRHPPFHVVLFVVEEPAEAATAVARHCKQCQYVG 113

[Close]

BLAST of IVF0002626 vs. NCBI nr
Match: KAA0032172.1 (PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa] >TYK14417.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa])

HSP 1 Score: 243 bits (619), Expect = 5.42e-81
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL 116
           GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL
Sbjct: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL 116

[Close]

BLAST of IVF0002626 vs. NCBI nr
Match: XP_008456986.1 (PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo])

HSP 1 Score: 223 bits (568), Expect = 5.30e-67
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105
           GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG
Sbjct: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105

[Close]

BLAST of IVF0002626 vs. NCBI nr
Match: XP_004140423.1 (PHD finger protein MALE STERILITY 1 [Cucumis sativus] >KAE8648106.1 hypothetical protein Csa_004730 [Cucumis sativus])

HSP 1 Score: 208 bits (530), Expect = 1.92e-61
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS E
Sbjct: 2   MTTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCE 61

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105
           GFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQCQYVG
Sbjct: 62  GFRCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVG 106

[Close]

BLAST of IVF0002626 vs. NCBI nr
Match: XP_038891568.1 (PHD finger protein MALE STERILITY 1 [Benincasa hispida])

HSP 1 Score: 184 bits (467), Expect = 2.54e-52
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 3   TDVIGKKRRRGGGGG-ERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEG 62
           T+V GKKRRRGGGGG ERVF FKSFGENGHPAELVG FRENVEALLGFG+ E GEC GEG
Sbjct: 2   TEVNGKKRRRGGGGGGERVFRFKSFGENGHPAELVGLFRENVEALLGFGRCEGGECGGEG 61

Query: 63  FRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105
           FRCWSFRLQVQRQPP HVVLFV+EEA E+ TVA+RQCKQCQYVG
Sbjct: 62  FRCWSFRLQVQRQPPFHVVLFVVEEAAEAATVAARQCKQCQYVG 105

[Close]

BLAST of IVF0002626 vs. NCBI nr
Match: XP_022156066.1 (PHD finger protein MALE STERILITY 1 [Momordica charantia])

HSP 1 Score: 155 bits (392), Expect = 1.29e-41
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 3   TDVIGKKRRRG-GGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEG 62
            + IG+KRRRG GGGGE+VF FKSFGENG+P E VGRFRENV ALLGFG+WESG+C+G G
Sbjct: 2   AEAIGRKRRRGAGGGGEKVFRFKSFGENGYPVEFVGRFRENVVALLGFGRWESGDCAG-G 61

Query: 63  FRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105
            + WSF+LQVQRQPP H+V+FV+EE VE+   A R CK CQYVG
Sbjct: 62  LQSWSFQLQVQRQPPFHIVMFVVEEPVEAAPPAGRHCKDCQYVG 104

[Close]

BLAST of IVF0002626 vs. TAIR 10
Match: AT5G22260.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-17
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 6   IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRC 65
           I KKR+R   G  RVF  K+FGE+GHPAE+    FR+N+  LL FG +ES    G     
Sbjct: 13  IPKKRKR---GESRVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS---- 72

Query: 66  WSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           WSF+L++QR P P++V+LFV+EE +E+    + +C  CQYVG
Sbjct: 73  WSFQLEIQRNPNPLYVLLFVVEEPIEAS--LNLRCNHCQYVG 105

The following BLAST results are available for this feature:

BLAST of IVF0002626 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS5	1.3e-15	48.04	PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 ...	[more]
Q67V61	5.8e-13	44.12	PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of IVF0002626 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CR48	6.0e-61	100.00	PHD finger protein MALE STERILITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0KPP3	4.9e-55	92.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G291670 PE=4 SV=1	[more]
A0A1S3C4G3	4.9e-55	100.00	PHD finger protein MALE STERILITY 1 OS=Cucumis melo OX=3656 GN=LOC103496772 PE=4...	[more]
A0A6J1DTQ4	1.3e-34	70.87	PHD finger protein MALE STERILITY 1 OS=Momordica charantia OX=3673 GN=LOC1110230...	[more]
A0A6J1KWF9	2.9e-31	63.39	PHD finger protein MALE STERILITY 1 OS=Cucurbita maxima OX=3661 GN=LOC111498812 ...	[more]

BLAST of IVF0002626 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032172.1	5.42e-81	100.00	PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa] >TYK14417.1 PHD f...	[more]
XP_008456986.1	5.30e-67	100.00	PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]	[more]
XP_004140423.1	1.92e-61	94.29	PHD finger protein MALE STERILITY 1 [Cucumis sativus] >KAE8648106.1 hypothetical...	[more]
XP_038891568.1	2.54e-52	85.58	PHD finger protein MALE STERILITY 1 [Benincasa hispida]	[more]
XP_022156066.1	1.29e-41	70.19	PHD finger protein MALE STERILITY 1 [Momordica charantia]	[more]

BLAST of IVF0002626 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22260.1	8.9e-17	48.04	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46201	PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED	coord: 6..106
None	No IPR available	PANTHER	PTHR46201:SF1	PHD FINGER PROTEIN MALE STERILITY 1	coord: 6..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002626.1	IVF0002626.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048655	anther wall tapetum morphogenesis
biological_process	GO:0071367	cellular response to brassinosteroid stimulus
biological_process	GO:0055046	microgametogenesis
biological_process	GO:0009846	pollen germination
biological_process	GO:0010208	pollen wall assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding