Homology
BLAST of IVF0002057 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 9.0e-06
Identity = 57/260 (21.92%), Postives = 104/260 (40.00%), Query Frame = 0
Query: 28 NNISIVNLN--------NDNFLLWKFQVVTTLEGYDLEKYLD---------------PHL 87
NN SI+N+N + N+L+W QV +GY+L +LD P +
Sbjct: 11 NNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRV 70
Query: 88 EP---------LSQFLNLLGSMNKDILNQMLNCNSTMDISANLHGVYSARCLAQAMQFKS 147
P + +LG+++ + + + I L +Y+ Q ++
Sbjct: 71 NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRT 130
Query: 148 KLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSPEDHILYVLVELGLEYESMISVICAY 207
+L+ K + +Y + + +A + KP+ ++ + VL L EY+ +I I A
Sbjct: 131 QLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAK 190
Query: 208 TDSPSIQDITSLLLTKESRIECTFSVESSLPSANLAA--QGLENNIDQPIKQQNTYKSNT 254
P++ +I LL ES+I S +AN + N + + N Y +
Sbjct: 191 DTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRN 250
BLAST of IVF0002057 vs. ExPASy TrEMBL
Match:
A0A5D3BU96 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001390 PE=4 SV=1)
HSP 1 Score: 337.4 bits (864), Expect = 5.2e-89
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 85 MLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASV 144
MLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASV
Sbjct: 1 MLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASV 60
Query: 145 NKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESS 204
NKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESS
Sbjct: 61 NKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESS 120
Query: 205 LPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNYGGRFNRNNMSLL 259
LPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNYGGRFNRNNMSLL
Sbjct: 121 LPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNYGGRFNRNNMSLL 174
BLAST of IVF0002057 vs. ExPASy TrEMBL
Match:
A0A5A7VGA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00100 PE=4 SV=1)
HSP 1 Score: 273.9 bits (699), Expect = 7.0e-70
Identity = 161/261 (61.69%), Postives = 175/261 (67.05%), Query Frame = 0
Query: 1 MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60
M QS DASS I +MF+S N ISIV LN+DNFLLW+FQVVT LEGYDLEKYL
Sbjct: 1 MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60
Query: 61 DPHLEPLSQFLN-------------------------------------LLGSMNKDILN 120
D LEP SQF N LLG MN++ILN
Sbjct: 61 DSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILN 120
Query: 121 QMLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMAS 180
QMLNCNST DI ANLHG+Y ARCLAQAMQ KSKLQNIKK +PLKEYFMKIQQCV+A+AS
Sbjct: 121 QMLNCNSTKDIWANLHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALAS 180
Query: 181 VNKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVES 225
V KP +DHILY+L LG EYESMIS C Y SPSIQDITSLLLTKES I+CT ES
Sbjct: 181 VGKPTPSDDHILYILAGLGPEYESMISDFCLYC-SPSIQDITSLLLTKESCIKCTIKAES 240
BLAST of IVF0002057 vs. ExPASy TrEMBL
Match:
A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 147/286 (51.40%), Postives = 190/286 (66.43%), Query Frame = 0
Query: 1 MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60
MSS SS++ N +ASS I+++F SGN IS+V LN+D FLLWKFQ++T LE YDLE +L
Sbjct: 1 MSSTSSLLGVENT-EASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFL 60
Query: 61 DPHLEPLSQFLN------------------------------LLGSMNKDILNQMLNCNS 120
+ EP S++L LLGSM+++ILNQML+C S
Sbjct: 61 ESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKS 120
Query: 121 TMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSP 180
+I L G++S+R LAQAMQFK+KL NIKK +MPLKEYF+KI QCV+A+AS+NKPVS
Sbjct: 121 AKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSS 180
Query: 181 EDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANL 240
+DHILY+L LG +Y+SMISVI A TDSPS+Q++ SLLLT+ES+ E E++LPS N+
Sbjct: 181 DDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNI 240
Query: 241 AAQGLENNIDQPIK-QQNTYKSN--TNNRRGRGWGRSNYGGRFNRN 254
Q E + I+ QN Y +N N R GRG GRSN G R NRN
Sbjct: 241 VTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN 285
BLAST of IVF0002057 vs. ExPASy TrEMBL
Match:
A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 147/286 (51.40%), Postives = 190/286 (66.43%), Query Frame = 0
Query: 1 MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60
MSS SS++ N +ASS I+++F SGN IS+V LN+D FLLWKFQ++T LE YDLE +L
Sbjct: 1 MSSTSSLLGVENT-EASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFL 60
Query: 61 DPHLEPLSQFLN------------------------------LLGSMNKDILNQMLNCNS 120
+ EP S++L LLGSM+++ILNQML+C S
Sbjct: 61 ESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKS 120
Query: 121 TMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSP 180
+I L G++S+R LAQAMQFK+KL NIKK +MPLKEYF+KI QCV+A+AS+NKPVS
Sbjct: 121 AKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSS 180
Query: 181 EDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANL 240
+DHILY+L LG +Y+SMISVI A TDSPS+Q++ SLLLT+ES+ E E++LPS N+
Sbjct: 181 DDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNI 240
Query: 241 AAQGLENNIDQPIK-QQNTYKSN--TNNRRGRGWGRSNYGGRFNRN 254
Q E + I+ QN Y +N N R GRG GRSN G R NRN
Sbjct: 241 VTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN 285
BLAST of IVF0002057 vs. ExPASy TrEMBL
Match:
A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53
Identity = 126/263 (47.91%), Postives = 169/263 (64.26%), Query Frame = 0
Query: 1 MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60
MSS SS + N + +F SGN IS+V L++DNFLLWKFQ++T LE YDLE +
Sbjct: 1 MSSNSSPLGVENTE------VSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFF 60
Query: 61 DPHLEPLSQFLN------------------------------LLGSMNKDILNQMLNCNS 120
+ LEP S++L LLGSM+++ILNQM++C S
Sbjct: 61 ESELEPPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKS 120
Query: 121 TMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSP 180
+I L G++S+R LAQAMQFK+KL NIKK +M LKEYF+KIQQCV+A+AS+NKPVS
Sbjct: 121 AKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSS 180
Query: 181 EDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANL 233
+DHILY+LV LG +Y+SMIS+I A TDSPSIQ++ SLLLT+ES+ E E++LP +
Sbjct: 181 DDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLISETALPYVKI 240
BLAST of IVF0002057 vs. NCBI nr
Match:
KAA0060692.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK03301.1 Integrase, catalytic core [Cucumis melo var. makuwa])
HSP 1 Score: 338 bits (867), Expect = 1.77e-115
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 85 MLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASV 144
MLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASV
Sbjct: 1 MLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASV 60
Query: 145 NKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESS 204
NKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESS
Sbjct: 61 NKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESS 120
Query: 205 LPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNYGGRFNRNNMSLL 258
LPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNYGGRFNRNNMSLL
Sbjct: 121 LPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNYGGRFNRNNMSLL 174
BLAST of IVF0002057 vs. NCBI nr
Match:
KAA0066107.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15146.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 276 bits (706), Expect = 1.03e-89
Identity = 158/247 (63.97%), Postives = 172/247 (69.64%), Query Frame = 0
Query: 15 DASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYLDPHLEPLSQFLN-- 74
DASS I +MF+S N ISIV LN+DNFLLW+FQVVT LEGYDLEKYLD LEP SQF N
Sbjct: 15 DASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVK 74
Query: 75 -----------------------------------LLGSMNKDILNQMLNCNSTMDISAN 134
LLG MN++ILNQMLNCNST DI AN
Sbjct: 75 VETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNENILNQMLNCNSTKDIWAN 134
Query: 135 LHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSPEDHILYV 194
LHG+Y ARCLAQAMQ KSKLQNIKK +PLKEYFMKIQQCV+A+ASV KP +DHILY+
Sbjct: 135 LHGIYFARCLAQAMQLKSKLQNIKKRVVPLKEYFMKIQQCVDALASVGKPTPSDDHILYI 194
Query: 195 LVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANLAAQGLEN 224
L LG EYESMIS C Y SPSIQDITSLLLTKES I+CT ESSL SANL AQGLE
Sbjct: 195 LAGLGPEYESMISDFCLYC-SPSIQDITSLLLTKESCIKCTIKAESSLSSANLDAQGLEK 254
BLAST of IVF0002057 vs. NCBI nr
Match:
KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 244 bits (623), Expect = 5.93e-71
Identity = 147/286 (51.40%), Postives = 190/286 (66.43%), Query Frame = 0
Query: 1 MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60
MSS SS++ N + ASS I+++F SGN IS+V LN+D FLLWKFQ++T LE YDLE +L
Sbjct: 1 MSSTSSLLGVENTE-ASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFL 60
Query: 61 DPHLEPLSQFLN------------------------------LLGSMNKDILNQMLNCNS 120
+ EP S++L LLGSM+++ILNQML+C S
Sbjct: 61 ESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKS 120
Query: 121 TMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSP 180
+I L G++S+R LAQAMQFK+KL NIKK +MPLKEYF+KI QCV+A+AS+NKPVS
Sbjct: 121 AKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSS 180
Query: 181 EDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANL 240
+DHILY+L LG +Y+SMISVI A TDSPS+Q++ SLLLT+ES+ E E++LPS N+
Sbjct: 181 DDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNI 240
Query: 241 AAQGLENNIDQPIK-QQNTYKSNT--NNRRGRGWGRSNYGGRFNRN 253
Q E + I+ QN Y +N N R GRG GRSN G R NRN
Sbjct: 241 VTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN 285
BLAST of IVF0002057 vs. NCBI nr
Match:
TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 244 bits (623), Expect = 5.93e-71
Identity = 147/286 (51.40%), Postives = 190/286 (66.43%), Query Frame = 0
Query: 1 MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60
MSS SS++ N + ASS I+++F SGN IS+V LN+D FLLWKFQ++T LE YDLE +L
Sbjct: 1 MSSTSSLLGVENTE-ASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFL 60
Query: 61 DPHLEPLSQFLN------------------------------LLGSMNKDILNQMLNCNS 120
+ EP S++L LLGSM+++ILNQML+C S
Sbjct: 61 ESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKS 120
Query: 121 TMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSP 180
+I L G++S+R LAQAMQFK+KL NIKK +MPLKEYF+KI QCV+A+AS+NKPVS
Sbjct: 121 AKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSS 180
Query: 181 EDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANL 240
+DHILY+L LG +Y+SMISVI A TDSPS+Q++ SLLLT+ES+ E E++LPS N+
Sbjct: 181 DDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNI 240
Query: 241 AAQGLENNIDQPIK-QQNTYKSNT--NNRRGRGWGRSNYGGRFNRN 253
Q E + I+ QN Y +N N R GRG GRSN G R NRN
Sbjct: 241 VTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRN 285
BLAST of IVF0002057 vs. NCBI nr
Match:
KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 220 bits (561), Expect = 9.72e-68
Identity = 120/238 (50.42%), Postives = 159/238 (66.81%), Query Frame = 0
Query: 23 MFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYLDPHLEPLSQFLN---------- 82
+F SGN IS+V L++DNFLLWKFQ++T LE YDLE + + LEP S++L
Sbjct: 17 IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSSSTSAT 76
Query: 83 --------------------LLGSMNKDILNQMLNCNSTMDISANLHGVYSARCLAQAMQ 142
LLGSM+++ILNQM++C S +I L G++S+R LAQAMQ
Sbjct: 77 RTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQ 136
Query: 143 FKSKLQNIKKEAMPLKEYFMKIQQCVNAMASVNKPVSPEDHILYVLVELGLEYESMISVI 202
FK+KL NIKK +M LKEYF+KIQQCV+A+AS+NKPVS +DHILY+LV LG +Y+SMIS+I
Sbjct: 137 FKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGYDYQSMISII 196
Query: 203 CAYTDSPSIQDITSLLLTKESRIECTFSVESSLPSANLAAQGLENNIDQPIKQ-QNTY 229
A TDSPSIQ++ SLLLT+ES+ E E++LP + Q E + I+ QN Y
Sbjct: 197 SARTDSPSIQEVMSLLLTQESQNESKLISETALPYVKIVTQTTEKGAESYIRNSQNNY 254
BLAST of IVF0002057 vs. TAIR 10
Match:
AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 49/192 (25.52%), Postives = 97/192 (50.52%), Query Frame = 0
Query: 73 LLGSMNKDILNQMLNCNST-MDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYF 132
+ G++ +L+ ++ T D+ +L ++ A+A+QF+++L+ + + + EY
Sbjct: 78 IYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYC 137
Query: 133 MKIQQCVNAMASVNKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTK 192
K++ + + +V+ P+S ++++L L +Y+ +++VI + PS + S+LL +
Sbjct: 138 QKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLME 197
Query: 193 ESRIECTFSVESSLPSANLAAQGLENNIDQPIKQQNTYKS---NTNNRRGRG------WG 252
ESR+ + +SSL N L N + +QQ Y N N+ GRG G
Sbjct: 198 ESRL--SNKSKSSLSHTN--HPSLSNVLFTVPRQQERYPQEYHNNNSNMGRGRSKKKNRG 257
Query: 253 RSNYGGRFNRNN 255
+ GR+N NN
Sbjct: 258 GGSSDGRYNNNN 265
BLAST of IVF0002057 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05
Identity = 50/240 (20.83%), Postives = 111/240 (46.25%), Query Frame = 0
Query: 32 IVNLNNDNFLLWKFQVVTTLEGYDLEKYLDPHLEPLSQ------------FLNLLGSMN- 91
++++ N+ W+ +T +D+ ++D L P + L+L G++
Sbjct: 23 MLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQKRDGIVKLSLYGTLTP 82
Query: 92 KDILNQMLNCNSTMDISANLHGVYSARCLAQAMQFKSKLQNIKKEAMPLKEYFMKIQQCV 151
K + +++ DI + + A+A++ S+L+ M + +Y+ K+++
Sbjct: 83 KQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLA 142
Query: 152 NAMASVNKPVSPEDHILYVLVELGLEYESMISVICAYTDSPSIQDITSLLLTKESRIECT 211
+++ +V+ PV+ + ++YVL L +++++I+VI PS D ++L +E R++
Sbjct: 143 DSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKRA 202
Query: 212 FSVESSLPSANLAAQGLENNIDQPIKQQNTYKSNTNNRRGRGWGRSNY---GGRFNRNNM 256
+ + ++ L + P+ N RGRG G + + GGRF+ NM
Sbjct: 203 IKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGNNIFRGRGGRFSYYNM 262
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q94HW2 | 9.0e-06 | 21.92 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3BU96 | 5.2e-89 | 100.00 | Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A5A7VGA1 | 7.0e-70 | 61.69 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7U233 | 6.0e-61 | 51.40 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3CH97 | 6.0e-61 | 51.40 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UB21 | 3.5e-53 | 47.91 | Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060692.1 | 1.77e-115 | 100.00 | Integrase, catalytic core [Cucumis melo var. makuwa] >TYK03301.1 Integrase, cata... | [more] |
KAA0066107.1 | 1.03e-89 | 63.97 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0048297.1 | 5.93e-71 | 51.40 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
TYK10642.1 | 5.93e-71 | 51.40 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0053143.1 | 9.72e-68 | 50.42 | keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT5G48050.1 | 3.2e-06 | 25.52 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
AT1G34070.1 | 1.2e-05 | 20.83 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |