IVF0001493 (gene) Melon (IVF77) v1

Overview


Name	IVF0001493
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ubiquitin-conjugating enzyme E2 7
Location	chr04: 20517872 .. 20518406 (+)
RNA-Seq Expression	IVF0001493
Synteny	IVF0001493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAGAACCTCACGCCTCGACCTCGTCTGCAACCTCACGCTGTCGTCCGTCCTTCCACCATCAGATTGTCGAACTCCACCCTCAACCTCATCTGCAAATGCTGCCAACCATCTTTAAATGTCATCCGTCACCGGCAATCGTCGTCCATCGTTCGTCTCTGGAACTACTCGCCTACCATCGGCGACATTTCGTCAGGTTAGGCGTGGCAAAAAAACAAGATTTAGGACAAGAAAAATGGTAGCATTTGATATTCTTTTAGAATCCATCTCTGTCCGAGAAATGAAGAATTTTATATTTGTTTTTCAAACCGTTTTGGTATGTTTGTTTTCTTCTGATGATTCTCTTTAATCATCATCGATTCGTAGGGTTTTGTTTTTCATCTTCTTCTTGCTCTTTCAACCACTCCTATTTTGTTTTCTCCTTTCAGATCTCTATAAGAATCCCGTTGATGGATTCTCCGCTGGTCTAGTGGATGAGAGCAATATATTTGAATGGAGCATTAAAATTATTGGTCCTCCTGATACACTTTAG

mRNA sequence

ATGCAAAAGAACCTCACGCCTCGACCTCGTCTGCAACCTCACGCTGTCGTCCGTCCTTCCACCATCAGATTGTCGAACTCCACCCTCAACCTCATCTGCAAATGCTGCCAACCATCTTTAAATGTCATCCGTCACCGGCAATCGTCGTCCATCGTTCGTCTCTGGAACTACTCGCCTACCATCGGCGACATTTCGTCAGATCTCTATAAGAATCCCGTTGATGGATTCTCCGCTGGTCTAGTGGATGAGAGCAATATATTTGAATGGAGCATTAAAATTATTGGTCCTCCTGATACACTTTAG

Coding sequence (CDS)

ATGCAAAAGAACCTCACGCCTCGACCTCGTCTGCAACCTCACGCTGTCGTCCGTCCTTCCACCATCAGATTGTCGAACTCCACCCTCAACCTCATCTGCAAATGCTGCCAACCATCTTTAAATGTCATCCGTCACCGGCAATCGTCGTCCATCGTTCGTCTCTGGAACTACTCGCCTACCATCGGCGACATTTCGTCAGATCTCTATAAGAATCCCGTTGATGGATTCTCCGCTGGTCTAGTGGATGAGAGCAATATATTTGAATGGAGCATTAAAATTATTGGTCCTCCTGATACACTTTAG

Protein sequence

MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPTIGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL

Homology

[Close]

BLAST of IVF0001493 vs. ExPASy Swiss-Prot
Match: Q42541 (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana OX=3702 GN=UBC13 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K+PVDGFSAGLVDE NIFEWS+ IIGPPDTL
Sbjct: 15  DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTL 48

[Close]

BLAST of IVF0001493 vs. ExPASy Swiss-Prot
Match: Q42540 (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana OX=3702 GN=UBC7 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K+PVDGFSAGLVDE NIFEWS+ IIGPPDTL
Sbjct: 15  DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTL 48

[Close]

BLAST of IVF0001493 vs. ExPASy Swiss-Prot
Match: P42747 (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana OX=3702 GN=UBC14 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K PVDGFSAGLVDE N+F+WS+ I+GPPDTL
Sbjct: 16  DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTL 49

[Close]

BLAST of IVF0001493 vs. ExPASy Swiss-Prot
Match: P62253 (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens OX=9606 GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 66  SDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           ++L KNPV+GFSAGL+D+++++ W + IIGPPDTL
Sbjct: 15  AELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTL 49

[Close]

BLAST of IVF0001493 vs. ExPASy Swiss-Prot
Match: Q4R5Y8 (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis OX=9541 GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 66  SDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           ++L KNPV+GFSAGL+D+++++ W + IIGPPDTL
Sbjct: 15  AELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTL 49

[Close]

BLAST of IVF0001493 vs. ExPASy TrEMBL
Match: A0A5A7VL72 (Ubiquitin-conjugating enzyme E2 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00500 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPT 60
           MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPT
Sbjct: 1   MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPT 60

Query: 61  IGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           IGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL
Sbjct: 61  IGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100

[Close]

BLAST of IVF0001493 vs. ExPASy TrEMBL
Match: A0A5B6YT16 (Putative ubiquitin-conjugating enzyme E2 7 isoform X1 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_003774 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DLYKNPVDGFSAGLVDESN+FEWS+ IIGPPDTL
Sbjct: 39  DLYKNPVDGFSAGLVDESNLFEWSLTIIGPPDTL 72

[Close]

BLAST of IVF0001493 vs. ExPASy TrEMBL
Match: A0A6N2LQ42 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS265050 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 58  SPTIGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           SP   D + DL KNPVDGFSAGL+DE+N+FEWS+ IIGPPDTL
Sbjct: 135 SPANVDAAVDLCKNPVDGFSAGLIDENNVFEWSVTIIGPPDTL 177

[Close]

BLAST of IVF0001493 vs. ExPASy TrEMBL
Match: A0A426ZEJ2 (UBC core domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00033620 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 64  ISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           + SDL KNPVDGFSAGLVD+SN+FEWS+ IIGPPDTL
Sbjct: 59  LGSDLMKNPVDGFSAGLVDDSNVFEWSVTIIGPPDTL 95

[Close]

BLAST of IVF0001493 vs. ExPASy TrEMBL
Match: A0A6A2ZAW7 (Ubiquitin-conjugating enzyme E2 7 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110954pilonHSYRG00190 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.6e-09
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL KNPVDGFSAGLVDESNIFEWSI IIGPPDTL
Sbjct: 15  DLCKNPVDGFSAGLVDESNIFEWSITIIGPPDTL 48

[Close]

BLAST of IVF0001493 vs. NCBI nr
Match: KAA0068164.1 (ubiquitin-conjugating enzyme E2 7 [Cucumis melo var. makuwa] >TYK21084.1 ubiquitin-conjugating enzyme E2 7 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (525), Expect = 3.66e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPT 60
           MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPT
Sbjct: 1   MQKNLTPRPRLQPHAVVRPSTIRLSNSTLNLICKCCQPSLNVIRHRQSSSIVRLWNYSPT 60

Query: 61  IGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100
           IGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL
Sbjct: 61  IGDISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100

[Close]

BLAST of IVF0001493 vs. NCBI nr
Match: RWW39308.1 (hypothetical protein BHE74_00055370, partial [Ensete ventricosum] >RZS13234.1 hypothetical protein BHM03_00044781, partial [Ensete ventricosum])

HSP 1 Score: 70.5 bits (171), Expect = 1.45e-13
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 64  ISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100
           + SDL KNPVDGFSAGLVD+SN+FEWS+ IIGPPDTL
Sbjct: 37  LGSDLMKNPVDGFSAGLVDDSNVFEWSVTIIGPPDTL 73

[Close]

BLAST of IVF0001493 vs. NCBI nr
Match: TYK21942.1 (Ubiquitin-conjugating enzyme E2 7 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.31e-13
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100
           DL KNPVDGFSAGLVDESNIFEWS+ IIGPPDTL
Sbjct: 16  DLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTL 49

[Close]

BLAST of IVF0001493 vs. NCBI nr
Match: RRT62407.1 (hypothetical protein B296_00033620 [Ensete ventricosum])

HSP 1 Score: 70.5 bits (171), Expect = 2.56e-13
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 64  ISSDLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100
           + SDL KNPVDGFSAGLVD+SN+FEWS+ IIGPPDTL
Sbjct: 59  LGSDLMKNPVDGFSAGLVDDSNVFEWSVTIIGPPDTL 95

[Close]

BLAST of IVF0001493 vs. NCBI nr
Match: KAF7823595.1 (ubiquitin-conjugating enzyme E2 7 [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 6.58e-13
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 100
           DL KNPVDGFSAGLVDE+NIFEWS+ IIGPPDTL
Sbjct: 16  DLCKNPVDGFSAGLVDENNIFEWSVTIIGPPDTL 49

[Close]

BLAST of IVF0001493 vs. TAIR 10
Match: AT3G46460.1 (ubiquitin-conjugating enzyme 13 )

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K+PVDGFSAGLVDE NIFEWS+ IIGPPDTL
Sbjct: 15  DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTL 48

[Close]

BLAST of IVF0001493 vs. TAIR 10
Match: AT5G59300.1 (ubiquitin carrier protein 7 )

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K+PVDGFSAGLVDE NIFEWS+ IIGPPDTL
Sbjct: 52  DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTL 85

[Close]

BLAST of IVF0001493 vs. TAIR 10
Match: AT3G55380.1 (ubiquitin-conjugating enzyme 14 )

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K PVDGFSAGLVDE N+F+WS+ I+GPPDTL
Sbjct: 16  DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTL 49

[Close]

BLAST of IVF0001493 vs. TAIR 10
Match: AT3G55380.2 (ubiquitin-conjugating enzyme 14 )

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 67  DLYKNPVDGFSAGLVDESNIFEWSIKIIGPPDTL 101
           DL K PVDGFSAGLVDE N+F+WS+ I+GPPDTL
Sbjct: 16  DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTL 49

The following BLAST results are available for this feature:

BLAST of IVF0001493 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42541	1.8e-10	85.29	Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana OX=3702 GN=UBC13 PE=2...	[more]
Q42540	1.8e-10	85.29	Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana OX=3702 GN=UBC7 PE=1 S...	[more]
P42747	1.2e-09	76.47	Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana OX=3702 GN=UBC14 PE=1...	[more]
P62253	1.4e-07	60.00	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens OX=9606 GN=UBE2G1 PE=1 SV=3	[more]
Q4R5Y8	1.4e-07	60.00	Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis OX=9541 GN=UBE2G1 PE=2...	[more]

BLAST of IVF0001493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL72	1.1e-50	100.00	Ubiquitin-conjugating enzyme E2 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5B6YT16	1.2e-09	91.18	Putative ubiquitin-conjugating enzyme E2 7 isoform X1 (Fragment) OS=Davidia invo...	[more]
A0A6N2LQ42	2.1e-09	72.09	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS265050 PE=3 SV=...	[more]
A0A426ZEJ2	2.7e-09	81.08	UBC core domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_0003362...	[more]
A0A6A2ZAW7	4.6e-09	94.12	Ubiquitin-conjugating enzyme E2 7 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig001...	[more]

BLAST of IVF0001493 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068164.1	3.66e-67	100.00	ubiquitin-conjugating enzyme E2 7 [Cucumis melo var. makuwa] >TYK21084.1 ubiquit...	[more]
RWW39308.1	1.45e-13	81.08	hypothetical protein BHE74_00055370, partial [Ensete ventricosum] >RZS13234.1 hy...	[more]
TYK21942.1	2.31e-13	91.18	Ubiquitin-conjugating enzyme E2 7 [Cucumis melo var. makuwa]	[more]
RRT62407.1	2.56e-13	81.08	hypothetical protein B296_00033620 [Ensete ventricosum]	[more]
KAF7823595.1	6.58e-13	88.24	ubiquitin-conjugating enzyme E2 7 [Senna tora]	[more]

BLAST of IVF0001493 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46460.1	1.3e-11	85.29	ubiquitin-conjugating enzyme 13	[more]
AT5G59300.1	1.3e-11	85.29	ubiquitin carrier protein 7	[more]
AT3G55380.1	8.2e-11	76.47	ubiquitin-conjugating enzyme 14	[more]
AT3G55380.2	8.2e-11	76.47	ubiquitin-conjugating enzyme 14	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 65..100 e-value: 1.8E-7 score: 32.9
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 67..99
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 56..100 score: 11.386292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001493.1	IVF0001493.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016740	transferase activity