IVF0001243 (gene) Melon (IVF77) v1

Overview
NameIVF0001243
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionFlagellar basal-body rod protein FlgB
Locationchr10: 11452604 .. 11452846 (-)
RNA-Seq ExpressionIVF0001243
SyntenyIVF0001243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGTAACAAGAATGTCGATCAATCTGAAAAGAAAGACGCACTATCCATCGCCAATTCATCTGAAAGAGACATCAAAATCATGTGCTTCGATGGTACTTTGTTGAAGCAAGCTCAACTAGCTTCCTCGTCGCACAATGAAACTCTACCCATTTCGAGTGAAGTTTTTGGAACAGATGGATGGAATCCTTTCAATTTGAACGGCAAAGAAATGCCTATAATAGATGAAAATATTGTATAG

mRNA sequence

ATGGTAGGTAACAAGAATGTCGATCAATCTGAAAAGAAAGACGCACTATCCATCGCCAATTCATCTGAAAGAGACATCAAAATCATGTGCTTCGATGGTACTTTGTTGAAGCAAGCTCAACTAGCTTCCTCGTCGCACAATGAAACTCTACCCATTTCGAGTGAAGTTTTTGGAACAGATGGATGGAATCCTTTCAATTTGAACGGCAAAGAAATGCCTATAATAGATGAAAATATTGTATAG

Coding sequence (CDS)

ATGGTAGGTAACAAGAATGTCGATCAATCTGAAAAGAAAGACGCACTATCCATCGCCAATTCATCTGAAAGAGACATCAAAATCATGTGCTTCGATGGTACTTTGTTGAAGCAAGCTCAACTAGCTTCCTCGTCGCACAATGAAACTCTACCCATTTCGAGTGAAGTTTTTGGAACAGATGGATGGAATCCTTTCAATTTGAACGGCAAAGAAATGCCTATAATAGATGAAAATATTGTATAG

Protein sequence

MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTDGWNPFNLNGKEMPIIDENIV
Homology
BLAST of IVF0001243 vs. ExPASy TrEMBL
Match: A0A5D3DRG2 (Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001040 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.4e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60

Query: 61 GWNPFNLNGKEMPIIDENIV 81
          GWNPFNLNGKEMPIIDENIV
Sbjct: 61 GWNPFNLNGKEMPIIDENIV 80

BLAST of IVF0001243 vs. ExPASy TrEMBL
Match: A0A5D3CGX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00340 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          M+  K  +QSEKK+A + A+    DIKI+  DG + +Q QL  +SHN+ LP SS VFGT+
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GWNPFNLNGKEMPIIDENI 80
          GWNPFN  GK +P+ID+NI
Sbjct: 61 GWNPFNFKGKVIPMIDDNI 79

BLAST of IVF0001243 vs. ExPASy TrEMBL
Match: A0A5D3CX63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00780 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSE 56
          MVGNKN DQSEKKD  S ANS ERD KI+C DG + +QAQLASSSHNE LP S E
Sbjct: 1  MVGNKNDDQSEKKDVPSKANSYERDTKIVCSDGPVSEQAQLASSSHNEALPSSRE 55

BLAST of IVF0001243 vs. ExPASy TrEMBL
Match: A0A5D3DBE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00950 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          M  +K+ DQS KK+  + A+ S+ DI+I+  +  L +QAQL S SH+E LP + EVFGT 
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNPFNLNGKEMPII 76
          GWN F+  GKE  ++
Sbjct: 61 GWNSFSFKGKEFGML 75

BLAST of IVF0001243 vs. ExPASy TrEMBL
Match: A0A5A7TK20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00550 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          M  +K+ DQS KK+  + A+ S+ DI+I+  +  L +QAQL S SH+E LP + EVFGT 
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNPFNLNGKE 72
          GWN F+  GKE
Sbjct: 61 GWNSFSFKGKE 71

BLAST of IVF0001243 vs. NCBI nr
Match: TYK25880.1 (flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 8.75e-50
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60

Query: 61 GWNPFNLNGKEMPIIDENIV 80
          GWNPFNLNGKEMPIIDENIV
Sbjct: 61 GWNPFNLNGKEMPIIDENIV 80

BLAST of IVF0001243 vs. NCBI nr
Match: TYK11051.1 (hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.88e-20
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          M+  K  +QSEKK+A + A+    DIKI+  DG + +Q QL  +SHN+ LP SS VFGT+
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GWNPFNLNGKEMPIIDENI 79
          GWNPFN  GK +P+ID+NI
Sbjct: 61 GWNPFNFKGKVIPMIDDNI 79

BLAST of IVF0001243 vs. NCBI nr
Match: TYK15036.1 (hypothetical protein E5676_scaffold45G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 6.42e-16
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSE 55
          MVGNKN DQSEKKD  S ANS ERD KI+C DG + +QAQLASSSHNE LP S E
Sbjct: 1  MVGNKNDDQSEKKDVPSKANSYERDTKIVCSDGPVSEQAQLASSSHNEALPSSRE 55

BLAST of IVF0001243 vs. NCBI nr
Match: KAA0041719.1 (hypothetical protein E6C27_scaffold67G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.11e-11
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60
          M  +K+ DQS KK+  + A+ S+ DI+I+  +  L +QAQL S SH+E LP + EVFGT 
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNPFNLNGKE 71
          GWN F+  GKE
Sbjct: 61 GWNSFSFKGKE 71

BLAST of IVF0001243 vs. NCBI nr
Match: KAA0062631.1 (hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.65e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 19  ANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTDGWNPFNLNGKEMPIIDEN 78
           AN  +RD +++   G + +QAQLASSS N+ LP S EVFGT GWNPF+   KE+ + +EN
Sbjct: 45  ANPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNEN 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DRG25.4e-37100.00Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3CGX21.3e-1453.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CX636.7e-1172.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DBE22.4e-0846.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TK203.1e-0849.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK25880.18.75e-50100.00flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa][more]
TYK11051.12.88e-2053.16hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa][more]
TYK15036.16.42e-1672.73hypothetical protein E5676_scaffold45G00780 [Cucumis melo var. makuwa][more]
KAA0041719.11.11e-1149.30hypothetical protein E6C27_scaffold67G00550 [Cucumis melo var. makuwa][more]
KAA0062631.13.65e-1152.46hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001243.1IVF0001243.1mRNA