IVF0000939 (gene) Melon (IVF77) v1

Overview
NameIVF0000939
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 16715427 .. 16715594 (-)
RNA-Seq ExpressionIVF0000939
SyntenyIVF0000939
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACGAGGACGACGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGAAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACGAGGACGACGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGAAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACGAGGACGACGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGAAACGCTTAG

Protein sequence

MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Homology
BLAST of IVF0000939 vs. ExPASy TrEMBL
Match: A0A5A7SZH3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00390 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.8e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 287 MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 341

BLAST of IVF0000939 vs. ExPASy TrEMBL
Match: A0A5A7UZF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00690 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCEDVDDED+GDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0000939 vs. ExPASy TrEMBL
Match: A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-22
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYC+D+DDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0000939 vs. ExPASy TrEMBL
Match: A0A5A7UID8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001540 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCEDVDDED+G+STYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 240 MTYCEDVDDEDEGNSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 294

BLAST of IVF0000939 vs. ExPASy TrEMBL
Match: A0A5A7U4G2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00400 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCEDVDDED+GDSTYATTTASEDIQYIETTNEWSQW DDLAESMFTEWQLRNA
Sbjct: 240 MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRNA 294

BLAST of IVF0000939 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 4.57e-30
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC+D+DDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0000939 vs. NCBI nr
Match: KAA0058871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 4.57e-30
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYCEDVDDED+GDSTY TTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0000939 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 9.21e-30
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYCEDVDDED+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFT+WQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0000939 vs. NCBI nr
Match: TYK11987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 3.75e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1   MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
           MTYC DVDDED+GDSTYATTTASEDIQYIETTNEWSQWR+DLAESMFTEWQLRNA
Sbjct: 53  MTYCNDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRNDLAESMFTEWQLRNA 107

BLAST of IVF0000939 vs. NCBI nr
Match: TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 5.13e-29
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 1  MTYCEDVDDEDDGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 55
          MTYC++VDD+D+GDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 
Sbjct: 1  MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNT 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SZH36.8e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UZF05.8e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4Q85.8e-2294.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UID87.5e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4G27.5e-2296.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0062284.14.57e-3094.55retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058871.14.57e-3096.36retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon p... [more]
TYK05336.19.21e-3094.55retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11987.13.75e-2994.55retrotransposon protein [Cucumis melo var. makuwa][more]
TYK04228.15.13e-2990.91retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000939.1IVF0000939.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding