HG10021706 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021706
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Gag-pol polyprotein
Location	Chr05: 14461591 .. 14463514 (+)
RNA-Seq Expression	HG10021706
Synteny	HG10021706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTTTGTGGCAGGAAAGGAACAGAACAAAATGTAGCTACCTCTAAAAACCTATCCTTCGAAGAAGTCCATCAACAGCGAATAGATGATTCTCATGCCTTGTCAATTCAAAAGGAGAGAATTGAGAAACTCATCGAAGATAATCATCGTCTTCTGAGCACCATTTCTGAGTTGAAGAAAGAGTTGAAAGGTTCAAAAGTTGAACTTGAAACAATGTCAAAGTTTGTTCGCATGATGAACTCAAGCACTAATGATCTTCACATAATTTTGTCTTCTGGCAAGCAGGTTTCTGATAAGCTTGGCATTGGGATCAATCAGCATGGGAAGCAGTTCTACAAAGGTGAATCATCCTGTTAAATAATTTTGATCCAGCCCAGGATTTACCAATGTCGATTCTAATGTCAGAGACAAAGGAAACGTCAATATCTCTAATGGATCATAATGTAAAGAAGAAATGAATTTCATTATTGTGGCAAAAAAAGGTCATATTCGACCCTATTATTTCAGCCTGTATGGAAGAATCAGCCACCTATTGTCTTGGAAGTATTCTAGAGGAACCTGGCCCATTGCTAATCCTAGCAAATATGTGCATATGAACAATGAATGGAGAGTTAAGAAAGCTAGTCCTTATTTTGAGACAAGGTGTCAAGTAGCTTTCACTTCCCTTCGGTCATCTTCAAAAGAGGAATAGTACTTTGATAGTGGATGTTCTCGTCACATGACTGGTGAAAAGTCATTTGTCACCAATGTGCAACCATGCGACTCTTGCTATGTTACCTTTGGAAATGGAGCAAAAGGAAAAGTACTGGGGAAAGGTCAATTGTTGTACCCTGGACTTCCAGCATTGGAGGATGTCTTTCTTATAAAGGGGTTAACAACAAACCTAATCAGCATAAGTCAACTATGCGATCAGGGCCTTGTTGTAAGCTTCTCAACAGATAAATGTTTGGTGACTAACAAAGACAATGTGACTGTCATGTCAGTTACGCATTCTTCTGACAATTATTACTTATGGACTCCTAATGTTGTTAATCATGTTTGTAACAACCCTAGAAACAAGTGTAAGAATAGTACTCCTCTAGAGACGACTCTTGATATGATGCAATGTACTAAACTTTTACCATATCACTTTTGGGTTGATGTTATTATTACTGATCGTCATGTTTCCAATTACCTTGCCTTGAGTCAAGGTATGTGTGCCCAAATTATGAAATATGGAGGGAAAGGAAATTTAGTCGTGTGAAATATTTTCACATATTTGGTGGCACGTGTTATATTATGACAAAATATGTCTTGAGACAAAAAATACAGTATTTTTCTGGGATATTCTACCAACAATCAAACGCCTTATGATTACAAACTAAAACATGCTCTATTTTTCAAGAAGTCAAAAGGAAAGTTGATTGTCTTTCAAATTTTTGTTGACGACATAATTTTCAATAAGATGTCTCAGGAGATGGTAGAGCATTCTGTCCAACACACGCAAACTGAGCTTGAAATGAGTTTGGTCAAACAACTTACTTACGTTTTGAGATCTCAGAATAAACAGATGGAAGTTGTGGAGGTAGGTCAATGTGAATTTCTCATGAGAACCTTATATCTTTGTAAATTTGTCTTATAGCAACTAAAGATATTTGATCAATGAAAGTCAAAGTGGTTCAAGTCAGCTTTTATAAACAGGGTGAATTCTTGTCAAGGTACTCAGACATTTGGTTGTAAAATGGTTAGTAAATCAGTAAAGAAGATAAAGGCCTTCAAGAAGGGTGGTTCTCCATCAAGAGACAATGTCTATGGTGTTCGAGTGAGGGGTTTTTCTTTCTCTTTTAGTGATGCCTTTGCTACAAATTCATTTGTCAATAAAAAGAGAATTGAGCCTATGATACATAAGAAAACTAAGAAGGAAAGGTGTGTTGTTAAATGA

mRNA sequence

ATGTATTTTTGTGGCAGGAAAGGAACAGAACAAAATGTAGCTACCTCTAAAAACCTATCCTTCGAAGAAGTCCATCAACAGCGAATAGATGATTCTCATGCCTTGTCAATTCAAAAGGAGAGAATTGAGAAACTCATCGAAGATAATCATCGTCTTCTGAGCACCATTTCTGAGTTGAAGAAAGAGTTGAAAGGTTCAAAAGTTGAACTTGAAACAATGTCAAAGTTTGTTCGCATGATGAACTCAAGCACTAATGATCTTCACATAATTTTGTCTTCTGGCAAGCAGGTTTCTGATAAGCTTGGCATTGGGATCAATCAGCATGGGAAGCAGTTCTACAAAGGTACTCAGACATTTGGTTGTAAAATGGTTAGTAAATCAGTAAAGAAGATAAAGGCCTTCAAGAAGGGTGGTTCTCCATCAAGAGACAATGTCTATGGTGTTCGAGTGAGGGGTTTTTCTTTCTCTTTTAGTGATGCCTTTGCTACAAATTCATTTGTCAATAAAAAGAGAATTGAGCCTATGATACATAAGAAAACTAAGAAGGAAAGGTGTGTTGTTAAATGA

Coding sequence (CDS)

ATGTATTTTTGTGGCAGGAAAGGAACAGAACAAAATGTAGCTACCTCTAAAAACCTATCCTTCGAAGAAGTCCATCAACAGCGAATAGATGATTCTCATGCCTTGTCAATTCAAAAGGAGAGAATTGAGAAACTCATCGAAGATAATCATCGTCTTCTGAGCACCATTTCTGAGTTGAAGAAAGAGTTGAAAGGTTCAAAAGTTGAACTTGAAACAATGTCAAAGTTTGTTCGCATGATGAACTCAAGCACTAATGATCTTCACATAATTTTGTCTTCTGGCAAGCAGGTTTCTGATAAGCTTGGCATTGGGATCAATCAGCATGGGAAGCAGTTCTACAAAGGTACTCAGACATTTGGTTGTAAAATGGTTAGTAAATCAGTAAAGAAGATAAAGGCCTTCAAGAAGGGTGGTTCTCCATCAAGAGACAATGTCTATGGTGTTCGAGTGAGGGGTTTTTCTTTCTCTTTTAGTGATGCCTTTGCTACAAATTCATTTGTCAATAAAAAGAGAATTGAGCCTATGATACATAAGAAAACTAAGAAGGAAAGGTGTGTTGTTAAATGA

Protein sequence

MYFCGRKGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQTFGCKMVSKSVKKIKAFKKGGSPSRDNVYGVRVRGFSFSFSDAFATNSFVNKKRIEPMIHKKTKKERCVVK

Homology

[Close]

BLAST of HG10021706 vs. NCBI nr
Match: KAA0059924.1 (Peptidase aspartic, catalytic [Cucumis melo var. makuwa] >TYK24870.1 Peptidase aspartic, catalytic [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-10
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 16  SKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSK 75
           +K+LSFEE+   R +D  A +IQKERI+ L+E+N RL+S I+ LK +LK  + E +   K
Sbjct: 343 NKDLSFEELKMLRKEDIKARAIQKERIQDLMEENERLMSVIASLKLKLKEVQNEYDQTIK 402

Query: 76  FVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQTFGC 122
           +V M+NS T +L  IL SG+  S K G+G +         ++  GC
Sbjct: 403 YVNMLNSGTENLDSILKSGQNSSSKYGLGFDASVSSRNSTSEVSGC 448

[Close]

BLAST of HG10021706 vs. NCBI nr
Match: KAA0050618.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07822.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-10
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 17  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKF 76
           KNL+FEE+  Q  +DS A +IQKER + L+E+N RL+S IS LK +LK  + E +   K 
Sbjct: 246 KNLTFEELKVQWKEDSEARAIQKERTQDLMEENERLMSVISSLKLKLKEVQCEYDQTLKS 305

Query: 77  VRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQ 118
           V+M+NS T +L +IL+SG    +K G+G +   ++    T+
Sbjct: 306 VKMLNSGTENLDVILNSGHNGLNKYGLGFDASARKINTTTE 346

[Close]

BLAST of HG10021706 vs. NCBI nr
Match: KAA0025487.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 7   KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGS 66
           + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  
Sbjct: 173 ESSEENY--DNEMTFEQLKVLWEEDTEARAIQKERIQDLMEENERLMSVISSLKLKLKEV 232

Query: 67  KVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQT 119
           + + + M KFV+M+NS T +L +IL+SG+  S K G+G +   +     T+T
Sbjct: 233 QKDYDQMIKFVKMLNSGTENLDLILNSGQTSSSKYGLGFDASERSIKPTTET 282

[Close]

BLAST of HG10021706 vs. NCBI nr
Match: TYK00378.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 7   KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGS 66
           + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  
Sbjct: 173 ESSEENY--DNEMTFEQLKVLWEEDTEARAIQKERIQDLMEENERLMSVISSLKLKLKEV 232

Query: 67  KVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQT 119
           + + + M KFV+M+NS T +L +IL+SG+  S K G+G +   +     T+T
Sbjct: 233 QKDYDQMIKFVKMLNSGTENLDLILNSGQTSSSKYGLGFDASERSIKPTTET 282

[Close]

BLAST of HG10021706 vs. NCBI nr
Match: KAA0053131.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01537.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 17  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKF 76
           KNL+FEE+     +DS A++IQKERI+ L+E+N RL+S I  LK +LK  + E +   K 
Sbjct: 202 KNLTFEELEVLWKEDSIAITIQKERIQDLMEENERLMSIIPSLKLKLKEVQCEYDQTLKS 261

Query: 77  VRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQ 118
           V+M+NS T +L +IL+SG+   +K G+G +   ++    T+
Sbjct: 262 VKMLNSRTENLDVILNSGQNGLNKYGLGFDASTRKINTTTE 302

[Close]

BLAST of HG10021706 vs. ExPASy TrEMBL
Match: A0A5A7UY03 (Peptidase aspartic, catalytic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001390 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 16  SKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSK 75
           +K+LSFEE+   R +D  A +IQKERI+ L+E+N RL+S I+ LK +LK  + E +   K
Sbjct: 343 NKDLSFEELKMLRKEDIKARAIQKERIQDLMEENERLMSVIASLKLKLKEVQNEYDQTIK 402

Query: 76  FVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQTFGC 122
           +V M+NS T +L  IL SG+  S K G+G +         ++  GC
Sbjct: 403 YVNMLNSGTENLDSILKSGQNSSSKYGLGFDASVSSRNSTSEVSGC 448

[Close]

BLAST of HG10021706 vs. ExPASy TrEMBL
Match: A0A5A7U5R6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001170 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 17  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKF 76
           KNL+FEE+  Q  +DS A +IQKER + L+E+N RL+S IS LK +LK  + E +   K 
Sbjct: 246 KNLTFEELKVQWKEDSEARAIQKERTQDLMEENERLMSVISSLKLKLKEVQCEYDQTLKS 305

Query: 77  VRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQ 118
           V+M+NS T +L +IL+SG    +K G+G +   ++    T+
Sbjct: 306 VKMLNSGTENLDVILNSGHNGLNKYGLGFDASARKINTTTE 346

[Close]

BLAST of HG10021706 vs. ExPASy TrEMBL
Match: A0A5A7SLA0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00920 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-10
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 7   KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGS 66
           + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  
Sbjct: 173 ESSEENY--DNEMTFEQLKVLWEEDTEARAIQKERIQDLMEENERLMSVISSLKLKLKEV 232

Query: 67  KVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQT 119
           + + + M KFV+M+NS T +L +IL+SG+  S K G+G +   +     T+T
Sbjct: 233 QKDYDQMIKFVKMLNSGTENLDLILNSGQTSSSKYGLGFDASERSIKPTTET 282

[Close]

BLAST of HG10021706 vs. ExPASy TrEMBL
Match: A0A5D3BMP7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00440 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-10
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 7   KGTEQNVATSKNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGS 66
           + +E+N      ++FE++     +D+ A +IQKERI+ L+E+N RL+S IS LK +LK  
Sbjct: 173 ESSEENY--DNEMTFEQLKVLWEEDTEARAIQKERIQDLMEENERLMSVISSLKLKLKEV 232

Query: 67  KVELETMSKFVRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQT 119
           + + + M KFV+M+NS T +L +IL+SG+  S K G+G +   +     T+T
Sbjct: 233 QKDYDQMIKFVKMLNSGTENLDLILNSGQTSSSKYGLGFDASERSIKPTTET 282

[Close]

BLAST of HG10021706 vs. ExPASy TrEMBL
Match: A0A5A7UHW4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001050 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 17  KNLSFEEVHQQRIDDSHALSIQKERIEKLIEDNHRLLSTISELKKELKGSKVELETMSKF 76
           KNL+FEE+     +DS A++IQKERI+ L+E+N RL+S I  LK +LK  + E +   K 
Sbjct: 202 KNLTFEELEVLWKEDSIAITIQKERIQDLMEENERLMSIIPSLKLKLKEVQCEYDQTLKS 261

Query: 77  VRMMNSSTNDLHIILSSGKQVSDKLGIGINQHGKQFYKGTQ 118
           V+M+NS T +L +IL+SG+   +K G+G +   ++    T+
Sbjct: 262 VKMLNSRTENLDVILNSGQNGLNKYGLGFDASTRKINTTTE 302

The following BLAST results are available for this feature:

BLAST of HG10021706 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059924.1	4.2e-10	41.51	Peptidase aspartic, catalytic [Cucumis melo var. makuwa] >TYK24870.1 Peptidase a...	[more]
KAA0050618.1	7.2e-10	42.57	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07822.1 gag-pol polyprotein [...	[more]
KAA0025487.1	1.2e-09	38.39	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK00378.1	1.2e-09	38.39	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053131.1	4.7e-09	41.58	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01537.1 gag-pol polyprotein [...	[more]

BLAST of HG10021706 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY03	2.0e-10	41.51	Peptidase aspartic, catalytic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U5R6	3.5e-10	42.57	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737...	[more]
A0A5A7SLA0	6.0e-10	38.39	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G...	[more]
A0A5D3BMP7	6.0e-10	38.39	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112...	[more]
A0A5A7UHW4	2.3e-09	41.58	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G...	[more]

BLAST of HG10021706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021706.1	HG10021706.1	mRNA