HG10021335 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021335
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L18a-like protein
Location	Chr05: 7793488 .. 7797891 (-)
RNA-Seq Expression	HG10021335
Synteny	HG10021335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGCGACGGGAAAAGCAGCGCGGTATTCGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCACAAACTATTATGTTTCTGCCCCACAACCGCAGCCGCAGCCGCAGCCTCAATCTGTCGTTGGTTTCCCTCAGCCGGTTGCGCCGTCCGGAGTTTCTGGCCACCATCCATGTTACCATGGACATTTGGGTTACCAAGCCGTTCCTGGTAAATAGCTACTCTCGTTGATGTTCTTTTTGTCATGTTTATGAATTTGGAGGATTTTGTTATGGTATGAATTTTAGTAGATTGATGACGAATTCAGAATCTAAAGGTTCCTCCTAAAAGTTGTGCAGATTTGGTGTTTAAATATTATTTTTTGAAGGGTATATTCGAATTGTTTGCTTTATTTAGGGATTGACGGTGTTTCGTATGGTATTTGCTAATGGTCATGACGATTTTGCTTTCTTACTTCTTTGCACATATTGGTATCCGTTGGTTTGATAAATATTAAATGCGTTCATGATGCTCATTGTGGTTTATAACTGATTTTCTTTCTATCTGATGTTTGGGGCCTCGAATGGGTTATTGATTCACTGGTATGAATGTATGAATAATATCTCATTGTTTTGTTTGATATCGCCCCTAATAAATAAATAATGTCTAGGGTTGTGAGAAATAAGGTTGGAAGCTATGTTCAGGATTTATAGGGACTGCTTTATAGCTACCAATTGGGACTGTTGACATAACTTACCTAAAGAAGATACATAGGCGCAGGCGAAGTCAAATGCTTCAAGAGCTAACTTATTGAACTAACGATGTTCTAGCCAGCTATAGGACAAGATTTTAATCCTGAGTTTGTATCTGGCATGGGGACATAACAATTTCTTTAGGAACAGGGAATATTTTTTTTTATCGCATGAGGATGCAAGAGAGAAAGGAGGAGATAGATTGAGATTGCTACCCTCTTTGTCAATGGTGATTACAAAGAAAATTTCTGATCGACTTGAATTTTATTAGGAGAACAATTGCAGAACTCTGCTTTGAAATTACCTGTACCATCTAGCTTCCAAAACTAGAGTGCTCCCTTAGAAATTTAACACATCTTTGAACTTAATTGTTCTGATGGTCCCTTTCATTCCACATCTCAATAATTTCTTCCATATTATAAATAGCATGATATTCTCTCGTAGAGTTTGAAGAAGGGTGGTCTCTTGAAAATGCATAATCACTTATTTTCTGTGTCCAAGGCATCTAGGAAAGTGTTCTAGGAGATAGAGAAGACAGAAGAGTCTAAGGAGATTTCTGAAGAAGGTCTGTCCTTGGATGGTGGCTCAAATCTAATTAATTGGAAGACGGTTTCAGCTGGAGGATGGTCTGGATGTTACTAGAGCCATTTAATGGGATGTATTGTTAGAGAGAACGGAGGTCTTTTTAATGGAGGAAAAGATTGTGGGAAAATTGTGTTTTTGTTTCCTTCTCATGTAGAGCCTTGCATAAGGTCTTCTGGAATTATTCTCTTTACATGGTTCGTGCCAATGGGGGAGTTTCTTTTGTTGTTTCCCCTATTTTCCTTTCCAACTCTTTTGGCTTGTAGGCACTTGCCTTATAATGATGGCCCAAAAGCAGCTGGATAATCAAATCTCATTTATTATTAAGGGAGGGCCCATTGGAAATTAAAAGAACTTGTGTAGTTCCTTCCATAACCACTTTTTGGACCCACACATCATGAGGAGCTGATCCTGAGCTTTGTTACTGTTCTTGCATCACATGTAATGATGCACCAAGTATTGTAAATATTCATACTTGAGGTTCTTTTCTGGTGTTAGCTTTTCAATGCAGCAGAGACCATACTAACAACTTAGGAGCCGTTTGGGGCACCAACTAGAAGTTGGTGGAGTAGATTATTATAGCTCACTCTATGTTTGGGAGGTGTATATAACTATTTATAACCTATAATTAAGTATAATAAATACTATTTCAAAACCCTCTATGCTACGGTATTTATCATTCTCACTCATCCTCTCTTTTCTTTTTTGCTACAATGTTTATTATTTCCTATCCAAACAAAAATAGTTTACACTCCAAACACAAATTATTATAACCCATATTAAAATAGTCTGCATCCCAAACACTAACTATTATAACCCGCTAACTATAATAACCAACTCAGCGCCCCAAATGCCTCCTTTAATCTCCTTTGGGACCACCCTGATTTCAAAAGCCTTTTGGTCATCTTCCAATTGAAGAAATCATCATTATATTTCTTTGAAGACTGTAGTTGCTTAATGCTCCCAATTTAAACCGCGTATAATTTGGCACATCCAATTTTATTTTTGTTAGATTATTCTGTAATTTAGTTGCTTAATATTATCGAGGTTAATTAAAGATGGGCGTTGAAAGTTGAATGCCATGTTCTTAGATTATATTGCAACATTTCAATCATGTCATCTAAGGTAATTCCATAAGCCAACATACAGATGATCTGTTTGGATTGACTTTCTAAATGTTTATACACACTTTTTTTTGCACTTATAAACACTTAGAAAGTTAGTCCAAACATACCCAAATTTTGTTTGAAGAGTGACTGTTATGGACCTTGTTTTGGCATGTCAATTAGGCGGTGTTTGCTTGATAATCTATTTCTCATGCTTCCGGGAGAAGTCTTACAACACGTGTCTATTGTGTCACCTAATGATTTGGTTAGTTCATGTAAATTCTATGCAAAGCATCCATTTTTAACCAATGGGCAAATTCCGCTTGTAGACTGATAGTTATGGACTGCGTTATAAACTTTTGACTATGGGTTTGGCATGCCAATTAGACAGGATGTCTGCTCAATAATCTACTTCTCATGCTTCCAGGAAGCGATTCACACGTCGTGATTTGGTTTGCTCATCTTAAACCAATGCAAGGGTTTATTTTGAATTTTCTAACGAAGTAACTTCTGAAAAAACACAAAATTTAATTCGGTCAACCATGTGTTTTTTTTTTCCCCTTGTGTGTGTGTGGGTACATAAATGTCTTTATGCAGTTATGCTCAATGGTAGGGATGCCTTTATCCATCATCCGCCTTAATGCTTTTATTTCTTGTAGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTAATAATTGTGATACCCCATTTCTCTACACTCATTCCCAACATGTCGATAATTCAGAAAAATCATCGTGTTGCCAGGTTTATGATTGGTTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGGGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTGTAAGTAACTATAATACAAATATGATTTATCATTACCTATCCTAAAAAATATGATTTCTCACCCATTCTCAATAATAATAATGATATTACTCCAAGTGGTACTCAAAATGATGAAGATTTGGGATGTTTTGAGACATTCTCTATAGTATTAGGTTCAAGGAAAATTTATAAACTATTTTTTCTTAGAGCTGACTCAAGGATTAGTGGAGGTGGGCAATGAGCATATAAGCGAGGAGTTGAGCATCCAACTCTTTGCTTCAATAATTAAGGAGAAATATCAATTTATACGCCTAAACTTTATAGGTTATATCAATTTAAACCTTGAACTAATAATTGTATTAATTTAAACCCTGAACTTTTGTACATGTATCAATTTACACCCTCCATTACGTTTCATTTGAAAAAACCTTATGTGAAACTTGTAGTTGTATCAATTAAACTTTCATAAATGAATCAATTTAGATTCTTTGACAGAATTTCCTTGGAAAATCACCTATGCATTTACTCTAATCGTCTATTTTGTTAAACTAACATTTGAAGAAATCTACCCATGTTGAAAATTAATGCATGGATGATTTTCAAAGGTAATTATAATGAAGGGTCTAAATTGATTGGCTTATGAGAACTTAGGAGTTTAATTGATTCAAATTATAAATTTCATGCGATATTGGTCAAACAAAATTTAGTGGAGGGTGTTAATTGATACGCTTGCAAAAGTTTAGGGTTCAAAATGATACAATTTTTAGTTTAAGGTTTAAATTGATACAACTCCTAAAGTTTAGGGGTTAAGTTGATATTTGTCAAATTAATAATAATGAAAAACCTGAAAACGGACCCAAATTTTATCCTCAGCTGGAAGTTTTAGGCCCCCATTCTGCCTGCTGTTTCCTTACTTGAACTTGACTGTGTGGTGTTAGGATGATATAATTTCCATCTACTGATTTTGAAATTGTGCTTCATTTTTGTATGCTCAGTCGGTTCTTGCCGTCATTGCTATAACATTTGGTATCACCAAGGGAGTTGAGCCCTGGTGA

mRNA sequence

ATGAGTGGCGACGGGAAAAGCAGCGCGGTATTCGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCACAAACTATTATGTTTCTGCCCCACAACCGCAGCCGCAGCCGCAGCCTCAATCTGTCGTTGGTTTCCCTCAGCCGGTTGCGCCGTCCGGAGTTTCTGGCCACCATCCATGTTACCATGGACATTTGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGTTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGGGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCGGTTCTTGCCGTCATTGCTATAACATTTGGTATCACCAAGGGAGTTGAGCCCTGGTGA

Coding sequence (CDS)

ATGAGTGGCGACGGGAAAAGCAGCGCGGTATTCGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCACAAACTATTATGTTTCTGCCCCACAACCGCAGCCGCAGCCGCAGCCTCAATCTGTCGTTGGTTTCCCTCAGCCGGTTGCGCCGTCCGGAGTTTCTGGCCACCATCCATGTTACCATGGACATTTGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGTTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGGGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCGGTTCTTGCCGTCATTGCTATAACATTTGGTATCACCAAGGGAGTTGAGCCCTGGTGA

Protein sequence

MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGHHPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW

Homology

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BLAST of HG10021335 vs. NCBI nr
Match: XP_008444018.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 150/159 (94.34%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKSS VFGDP SQYHYGTFQGV NYY S PQPQPQPQPQSVVGFPQPVAP  VSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGIT GVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of HG10021335 vs. NCBI nr
Match: XP_004147407.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetical protein Csa_019751 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 3.9e-81
Identity = 148/159 (93.08%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKS+ VFGDP SQYHYGTFQGV NYY S PQPQPQPQPQSVVGFPQPVA   VSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGIT GVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of HG10021335 vs. NCBI nr
Match: XP_038895475.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 303.9 bits (777), Expect = 8.1e-79
Identity = 146/159 (91.82%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKSSAVFGDPQSQYHYGTFQGV NYY SA    PQ QPQS VGFPQPV PSGVSGH
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSA----PQAQPQSFVGFPQPVTPSGVSGH 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           HPCYHGHLGYQAVPVQGYAI+E RPF+EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  HPCYHGHLGYQAVPVQGYAIIERRPFEEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGIT GVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 155

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BLAST of HG10021335 vs. NCBI nr
Match: XP_022140257.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 5.8e-77
Identity = 140/159 (88.05%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGK+SAV GDPQSQYHYGTFQGV NYY SA QPQPQPQP SVVGFPQPVAP  VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           HP YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVAC IASVLA++AITFG+TKG E W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

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BLAST of HG10021335 vs. NCBI nr
Match: XP_022927552.1 (60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6583922.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.8 bits (743), Expect = 7.1e-75
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKSSAVFGDPQSQYHYGTFQGV NYY SAP+PQPQP PQSVVGFP  VAP      
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPP----R 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           HPCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++KGVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

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BLAST of HG10021335 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 72/145 (49.66%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 15  QSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGHHPCYHGHLGYQAVP 74
           Q QY+YGTFQGV N+    P PQ       +  FP   A   + GH    +   G+  V 
Sbjct: 16  QHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGH-AYQNLQGHGGGVNYAQGFPVV- 75

Query: 75  VQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGY 134
           V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GY
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 135

Query: 135 VACAIASVLAVIAITFGITKGVEPW 160
           VAC+IASV+ +IA+  G+T  +  W
Sbjct: 136 VACSIASVVYLIAVMLGMTGDINIW 158

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BLAST of HG10021335 vs. ExPASy TrEMBL
Match: A0A1S3B9D9 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 150/159 (94.34%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKSS VFGDP SQYHYGTFQGV NYY S PQPQPQPQPQSVVGFPQPVAP  VSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGIT GVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of HG10021335 vs. ExPASy TrEMBL
Match: A0A0A0M051 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 148/159 (93.08%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKS+ VFGDP SQYHYGTFQGV NYY S PQPQPQPQPQSVVGFPQPVA   VSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGIT GVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of HG10021335 vs. ExPASy TrEMBL
Match: A0A6J1CGC1 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111010965 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.8e-77
Identity = 140/159 (88.05%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGK+SAV GDPQSQYHYGTFQGV NYY SA QPQPQPQP SVVGFPQPVAP  VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           HP YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGYVAC IASVLA++AITFG+TKG E W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

[Close]

BLAST of HG10021335 vs. ExPASy TrEMBL
Match: A0A6J1EHH7 (60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434348 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.4e-75
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MSGDGKSSAVFGDPQSQYHYGTFQGV NYY SAP+PQPQP PQSVVGFP  VAP      
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPP----R 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           HPCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++KGVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of HG10021335 vs. ExPASy TrEMBL
Match: A0A6J1KIR0 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495603 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 138/159 (86.79%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGH 60
           MS DGKSSAVFGDPQSQYHYGTFQGV NYY SAPQPQPQP PQSVVGFP  VAP      
Sbjct: 1   MSCDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQVAPP----R 60

Query: 61  HPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           HPCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++KGVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of HG10021335 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42
Identity = 87/158 (55.06%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 4   DGKSSAVFGDPQSQYH-YGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGHHP 63
           + KS     +  +Q+H YGTFQGV+NY      P PQ     V GFPQP AP GV     
Sbjct: 6   EDKSKGFASEEGNQHHQYGTFQGVSNY------PPPQ-NSAPVTGFPQPSAPPGVYDSGA 65

Query: 64  CYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL 123
            Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFLF++GFFLG IPWYVG FI++
Sbjct: 66  PYYAH-GYQTVPVHG-GVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMM 125

Query: 124 F-VRVDYREKPGYVACAIASVLAVIAITFGITKGVEPW 160
           F  R+DYREKPGY+AC IA++LA IA+  G++KG + W
Sbjct: 126 FGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

[Close]

BLAST of HG10021335 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 141.4 bits (355), Expect = 6.5e-34
Identity = 73/143 (51.05%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 20  YGTFQGVTNYYVSAPQPQPQPQPQS---VVGFPQPVAPSGVSGHHPCYHGHLGYQAVPVQ 79
           YGTFQGV  Y      P   P P S   V+G PQP  P G   H    H ++  +   V 
Sbjct: 16  YGTFQGVPTY-----PPPSYPHPPSHHPVIGIPQPSPPPGSPHHDISVHQYI-QEHQTVA 75

Query: 80  GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 139
           GY + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVA
Sbjct: 76  GYPVSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVA 135

Query: 140 CAIASVLAVIAITFGITKGVEPW 160
           C IA+V+A I I FG+  G   W
Sbjct: 136 CTIAAVVATITIVFGVMGGRGVW 152

[Close]

BLAST of HG10021335 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-33
Identity = 72/145 (49.66%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 15  QSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGHHPCYHGHLGYQAVP 74
           Q QY+YGTFQGV N+    P PQ       +  FP   A   + GH    +   G+  V 
Sbjct: 16  QHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGH-AYQNLQGHGGGVNYAQGFPVV- 75

Query: 75  VQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGY 134
           V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GY
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 135

Query: 135 VACAIASVLAVIAITFGITKGVEPW 160
           VAC+IASV+ +IA+  G+T  +  W
Sbjct: 136 VACSIASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of HG10021335 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-28
Identity = 65/126 (51.59%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 15  QSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGHHPCYHGHLGYQAVP 74
           Q QY+YGTFQGV N+    P PQ       +  FP   A   + GH    +   G+  V 
Sbjct: 16  QHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGH-AYQNLQGHGGGVNYAQGFPVV- 75

Query: 75  VQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGY 134
           V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GY
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 135

Query: 135 VACAIA 141
           VAC+IA
Sbjct: 136 VACSIA 139

[Close]

BLAST of HG10021335 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 72/187 (38.50%), Postives = 91/187 (48.66%), Query Frame = 0


Query: 15  QSQYHYGTFQGVTNYYVSAPQPQPQPQPQSVVGFPQPVAPSGVSGHHPCYHGHLGYQAVP 74
           Q QY+YGTFQGV N+    P PQ       +  FP   A   + GH    +   G+  V 
Sbjct: 16  QHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGH-AYQNLQGHGGGVNYAQGFPVV- 75

Query: 75  VQGYAILEGRPFQEARLPCCGIGMGWFL-------------------------------- 134
           V  Y ++E RP  E  LPCCG+GMGWFL                                
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVSSEILDELI 135

Query: 135 ----------FMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGI 160
                     F++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ +IA+  G+
Sbjct: 136 ASWNQYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGM 195

The following BLAST results are available for this feature:

BLAST of HG10021335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444018.1	2.1e-82	94.34	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
XP_004147407.1	3.9e-81	93.08	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetic...	[more]
XP_038895475.1	8.1e-79	91.82	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
XP_022140257.1	5.8e-77	88.05	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_022927552.1	7.1e-75	86.79	60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6583922.1 60S r...	[more]

BLAST of HG10021335 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	1.0e-31	49.66	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of HG10021335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9D9	1.0e-82	94.34	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 ...	[more]
A0A0A0M051	1.9e-81	93.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1	[more]
A0A6J1CGC1	2.8e-77	88.05	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1EHH7	3.4e-75	86.79	60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KIR0	1.7e-74	86.79	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]

BLAST of HG10021335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	3.8e-42	55.06	Ribosomal protein L18ae family	[more]
AT1G53560.1	6.5e-34	51.05	Ribosomal protein L18ae family	[more]
AT1G29970.1	7.1e-33	49.66	60S ribosomal protein L18A-1	[more]
AT1G29970.2	2.4e-28	51.59	60S ribosomal protein L18A-1	[more]
AT1G29970.3	1.0e-26	38.50	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46631:SF20	60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN	coord: 1..159
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021335.1	HG10021335.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome