HG10021330 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021330
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cold-regulated 413 inner membrane protein 1, chloroplastic-like
Location	Chr05: 7746199 .. 7748092 (+)
RNA-Seq Expression	HG10021330
Synteny	HG10021330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGGCTCCGGTTTTTTCACGTTCATCAGTTGGGCGAGCGACAGTTTGCTTGTTGAATCAAAACTAGAAAATCGACAGCATCGTTTTCAAATTCCAGTCCAAATCCGAGAGAAGATAGAGGCTGAACCAGGCAAAGGAAGAAAGGGGGAAATGGTTTGTGTATCTTTATCTTCTGCTGTTTCACTTTACAGTCCCTCTCTCTACAAATCCAAGCTCTCCGTTCCTCTCTCTCTAAGATCTTCATCGCCGAATGCAAAGCTCTCGTTCAGTCCTGCTGCTAAACGGAGTTCCATCTGTTACAATCCGCTCATGTAATTTTAGGCTCCGGATTCATGCTAGATTGTTTGAGTAGTAGCGGTTTTGGTTTAATAAAATTGAGAGTTTTAAAAAGAAAAGTTATTTGATCAGGTTTACTGTCGGTAGCGAGGGGATTGCGACGGCGGCGATTAACAAGAAGAGGAGCCGTGGTTTAAGTGCTGTTTGTTACGCTATGCCTCTTAACGCTCGCACTCTTCAGTGGGTCTCCACCATTTCTTCTGTGTAATTCTCCCTTCTCTCTATCAGATTCTTGTGTAATTGCATATAAGTGCTTTAAGCGAGGATCTGGGAAACAAGCATCATCACGTCTAATATATAATCTTATTATATCTTCCGAACTGTGCTTTAAATTATTGTTGTTTTGCTCTCTGAAGTAGAATTTGCTACTTTCAATCTTCGAGGTACGTTTCTGTGGAATCAGCACAGAATGCTCAATTTTAACCAATACTTAGATGGGTTTTTAAATGCTTTGCTACAATTCTTTTGATTCTGGTAGATAATTAGTTACGTTTAAGTCGATAGCATTCAGTGGCTACTTTTATAGTGACAACATACCACCACTTTCACCTTTATCTGCTGTTTCAGAGTCCATTGCACGTATTAAAGTATAATTTTTAAAACACTAGGTTTCTTCTCCAGGGTTTTAATGCTCGCAAGGGGGACTGGGATTCAGAAGTCATTTATTGTTCCGCTATTTGCTCTTCAGGCACCTGCAAGTGTTATCTCCTGGATTAAGTAAGCCTCGTGAAAGTTCTCTGTATGTTACTATCCCTTTTCTCCCTACGATCACATTGATGCGTTGATTATCCTCAAGCAAATAAGTTTAATTTTGGCCTTCTAGAGCCAATTTTGCTATATGCGGGTTAAGCCTCTCTATCAGTATCTATCAGCAGGATGCCAAGATCTATATGAGCTATTAGTTCCAATTTCTAAATAGATTAATGTTTTGGTTCTAACTTCGATTTCAGAGGAGAATATGGCATTTGGAGCGCTTTTCTGGCACTTCTTGTTCGACTGTTCTTCTTCATCCCTGGTATAATCTTTTGTCTCGTGATTTTCCTCACTGGATTATCAAATGAATTTAATTGCTGGTTATCATTCAATTTATCTAGTAAGGAACTTAGTTTATAACTTAGCTAGAAACTTATTAGTTTGAACCTCATTTTATTCAATTAACTAAAAGGGTTCCACTTTGTACAACCATTGAATGAATAGAATATTCATAGGTAGTCGGATGCTGGGTTCTTTTGGATGTAGGTGAATTGGAGATACCATTCATATCATTACTTTTGGTGATTGTTGCCCCATATCAAGTCCAAAATTTAAGGTAAACATTTAAACTTTTAATCAGTTTGAACTTAATTTTTCTTATCTTTGCATTTGATTATTATTTGTCATTTGCAGAGGAACTCAAGAAGGGAGCATTATCTCCCTACTTATTGCAGCATATTTGGCCTTCCAGCATTTCTCTCGAGCAGGCAGCTTTCGGAGAGCTTTTGACCAGAATTCAATTGTTGCAACAGTAGCAGTCATTTGTGTTACTGCTGTCTCATTCCTGCTCGTGATCTGA

mRNA sequence

ATGGCAGCCGGCTCCGGTTTTTTCACGTTCATCAGTTGGGCGAGCGACAGTTTGCTTGTTGAATCAAAACTAGAAAATCGACAGCATCGTTTTCAAATTCCAGTCCAAATCCGAGAGAAGATAGAGGCTGAACCAGGCAAAGGAAGAAAGGGGGAAATGGTTTGTGTATCTTTATCTTCTGCTGTTTCACTTTACAGTCCCTCTCTCTACAAATCCAAGCTCTCCGTTCCTCTCTCTCTAAGATCTTCATCGCCGAATGCAAAGCTCTCGTTCAGTCCTGCTGCTAAACGGAGTTCCATCTGTTACAATCCGCTCATGTTTACTGTCGGTAGCGAGGGGATTGCGACGGCGGCGATTAACAAGAAGAGGAGCCGTGGTTTAAGTGCTGTTTGTTACGCTATGCCTCTTAACGCTCGCACTCTTCAGTGGGTCTCCACCATTTCTTCTGTAGGAGAATATGGCATTTGGAGCGCTTTTCTGGCACTTCTTGTTCGACTGTTCTTCTTCATCCCTGGTGAATTGGAGATACCATTCATATCATTACTTTTGGTGATTGTTGCCCCATATCAAGTCCAAAATTTAAGAGGAACTCAAGAAGGGAGCATTATCTCCCTACTTATTGCAGCATATTTGGCCTTCCAGCATTTCTCTCGAGCAGGCAGCTTTCGGAGAGCTTTTGACCAGAATTCAATTGTTGCAACAGTAGCAGTCATTTGTGTTACTGCTGTCTCATTCCTGCTCGTGATCTGA

Coding sequence (CDS)

ATGGCAGCCGGCTCCGGTTTTTTCACGTTCATCAGTTGGGCGAGCGACAGTTTGCTTGTTGAATCAAAACTAGAAAATCGACAGCATCGTTTTCAAATTCCAGTCCAAATCCGAGAGAAGATAGAGGCTGAACCAGGCAAAGGAAGAAAGGGGGAAATGGTTTGTGTATCTTTATCTTCTGCTGTTTCACTTTACAGTCCCTCTCTCTACAAATCCAAGCTCTCCGTTCCTCTCTCTCTAAGATCTTCATCGCCGAATGCAAAGCTCTCGTTCAGTCCTGCTGCTAAACGGAGTTCCATCTGTTACAATCCGCTCATGTTTACTGTCGGTAGCGAGGGGATTGCGACGGCGGCGATTAACAAGAAGAGGAGCCGTGGTTTAAGTGCTGTTTGTTACGCTATGCCTCTTAACGCTCGCACTCTTCAGTGGGTCTCCACCATTTCTTCTGTAGGAGAATATGGCATTTGGAGCGCTTTTCTGGCACTTCTTGTTCGACTGTTCTTCTTCATCCCTGGTGAATTGGAGATACCATTCATATCATTACTTTTGGTGATTGTTGCCCCATATCAAGTCCAAAATTTAAGAGGAACTCAAGAAGGGAGCATTATCTCCCTACTTATTGCAGCATATTTGGCCTTCCAGCATTTCTCTCGAGCAGGCAGCTTTCGGAGAGCTTTTGACCAGAATTCAATTGTTGCAACAGTAGCAGTCATTTGTGTTACTGCTGTCTCATTCCTGCTCGTGATCTGA

Protein sequence

MAAGSGFFTFISWASDSLLVESKLENRQHRFQIPVQIREKIEAEPGKGRKGEMVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSEGIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSVGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGSIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI

Homology

[Close]

BLAST of HG10021330 vs. NCBI nr
Match: XP_038896035.1 (cold-regulated 413 inner membrane protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-85
Identity = 182/229 (79.48%), Postives = 191/229 (83.41%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCVSLSSAVSLY+PSLY+SKLSVPLSLRSS PNAKLSFSPAAK+SSICYNPL F VGSE
Sbjct: 1   MVCVSLSSAVSLYNPSLYRSKLSVPLSLRSSPPNAKLSFSPAAKQSSICYNPLRFAVGSE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           GIATAAI KKRSRGLSA+CYAMP+NARTLQW+STISS                       
Sbjct: 61  GIATAAITKKRSRGLSAICYAMPVNARTLQWISTISSAVLMLAKGTGIQKSFIVPLFALL 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQ+LRGTQEG
Sbjct: 121 APASVVSWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQSLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           +IISL+IAAYLAFQHFSRAGSFRRAFDQNSIVATVAVIC TAVSFLLVI
Sbjct: 181 NIISLMIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICFTAVSFLLVI 229

[Close]

BLAST of HG10021330 vs. NCBI nr
Match: XP_008443932.1 (PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Cucumis melo] >KAA0057095.1 cold-regulated 413 inner membrane protein 2 [Cucumis melo var. makuwa] >TYK20630.1 cold-regulated 413 inner membrane protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-82
Identity = 178/229 (77.73%), Postives = 185/229 (80.79%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCVSLSSAVSLY PS YKSKLSVPLSLRSS PNAKLS + AAK+SSICYNPL F VGSE
Sbjct: 1   MVCVSLSSAVSLYPPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           GIATA INKK++RGLSA CYAMP+N RTLQWVSTISSV                      
Sbjct: 61  GIATAGINKKKNRGLSAACYAMPVNTRTLQWVSTISSVVLMLAKGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
            IISLLIAAYLAFQHFSRAGSF+RAFDQNSIVATVAVIC+TAVSFL VI
Sbjct: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVICITAVSFLFVI 229

[Close]

BLAST of HG10021330 vs. NCBI nr
Match: XP_004147401.1 (cold-regulated 413 inner membrane protein 2, chloroplastic [Cucumis sativus] >KGN65572.1 hypothetical protein Csa_019760 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79
Identity = 174/229 (75.98%), Postives = 182/229 (79.48%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCVSLSSAVSLY PS YKSKLSVPLSLRSS PNAKLS + AAK+SSICYNPL F VGSE
Sbjct: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           G     INKK+SRGLSAVCYAMP+N RTLQW+STISSV                      
Sbjct: 61  G-----INKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
            IISLLIAAYLAFQHFSRAGSF+RAFDQNSIVATVAV+C+TAVSFL VI
Sbjct: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 224

[Close]

BLAST of HG10021330 vs. NCBI nr
Match: XP_023542165.1 (cold-regulated 413 inner membrane protein 1, chloroplastic-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.8 bits (769), Expect = 1.1e-77
Identity = 172/233 (73.82%), Postives = 186/233 (79.83%), Query Frame = 0


Query: 49  RKGEMVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFT 108
           +KGE+VCV LSSA+SL+SP L KSKLS PLSLRSS PNAKL+F+PAAK+ SIC NP+ F 
Sbjct: 5   KKGEIVCV-LSSAISLHSPFLCKSKLSAPLSLRSSLPNAKLTFNPAAKQRSICSNPIRFG 64

Query: 109 VGSEGIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV------------------ 168
            GS+  +T AINKKR RGLSAVCYAMPL+AR LQW+STISSV                  
Sbjct: 65  FGSDVSSTLAINKKRRRGLSAVCYAMPLSARNLQWISTISSVILMLARGTGIQKSFIVPL 124

Query: 169 --------------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRG 228
                         GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRG
Sbjct: 125 FALQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRG 184

Query: 229 TQEGSIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           TQEG+IISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVA+ICVTAVSFLLVI
Sbjct: 185 TQEGTIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAIICVTAVSFLLVI 236

[Close]

BLAST of HG10021330 vs. NCBI nr
Match: XP_022994881.1 (cold-regulated 413 inner membrane protein 1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 298.9 bits (764), Expect = 4.1e-77
Identity = 171/229 (74.67%), Postives = 184/229 (80.35%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCV LSSA+SL+SP L+KSKLS PLSLRSS PNAKL+F+PAAK+SSIC NP+ F  GS+
Sbjct: 1   MVCV-LSSAISLHSPFLHKSKLSAPLSLRSSLPNAKLTFNPAAKQSSICSNPIRFGFGSD 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
             +T AINKKR RGLSAVCYAMPL+AR LQW+STISSV                      
Sbjct: 61  VSSTLAINKKRRRGLSAVCYAMPLSARNLQWISTISSVILMLARGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           +IISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVA+ICVTAVSFLLVI
Sbjct: 181 TIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAIICVTAVSFLLVI 228

[Close]

BLAST of HG10021330 vs. ExPASy Swiss-Prot
Match: Q94AL8 (Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=COR413IM1 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.4e-41
Identity = 103/230 (44.78%), Postives = 141/230 (61.30%), Query Frame = 0


Query: 54  VCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSEG 113
           +C+S S  VSL+    +       LSL+  S  + LS       S +C+NPL  +   + 
Sbjct: 4   LCLSSSRIVSLHHQKPF-------LSLKLRSRPSDLS-GLGRHTSPVCFNPLRLSGDRQR 63

Query: 114 IATAA--INKKRSRGLSAVCYAMPLNARTLQWVSTISSV--------------------- 173
            AT +  + K+R RG S VCYA P++A +LQW+STIS +                     
Sbjct: 64  TATVSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFAL 123

Query: 174 -----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQE 233
                      GEYG+W+AFLAL+ RLFF  PGELE+PFI+LLLVIVAPYQV N+RG QE
Sbjct: 124 HAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQE 183

Query: 234 GSIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           G+II++ I+ +LAFQHFSRAGS  +A+++ S++ATVA+I VT VS LL++
Sbjct: 184 GAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVSLLLLL 225

[Close]

BLAST of HG10021330 vs. ExPASy Swiss-Prot
Match: F4I1G5 (Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=COR413IM2 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.2e-40
Identity = 109/231 (47.19%), Postives = 136/231 (58.87%), Query Frame = 0


Query: 54  VCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSEG 113
           +C+S S  V     SL+  K  + L LR    N           S +C+NPL  +   + 
Sbjct: 4   LCLSSSRIV-----SLHHQKPFLALKLRPRPSNIS---GLGHSTSVVCFNPLRLSADRQR 63

Query: 114 IAT--AAINKKRSRGLSAVCYAMP-LNARTLQWVSTISSV-------------------- 173
            AT  A   K+R RG S VCYA P L+   LQW+STIS V                    
Sbjct: 64  TATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFA 123

Query: 174 ------------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQ 233
                       GEYGIW+AFLALL RLFF  P ELE+PFI+LLLVIVAPYQV ++RG Q
Sbjct: 124 LQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQ 183

Query: 234 EGSIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           EG+I+SL I+ +LAFQHFSRAG+ ++AFDQNS++ATVA+I VT VSFL +I
Sbjct: 184 EGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 226

[Close]

BLAST of HG10021330 vs. ExPASy Swiss-Prot
Match: Q9SVL6 (Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana OX=3702 GN=COR413PM2 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.4e-09
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 151 GEYGIWSAFLALLVRLFF--FIPGELEIPFISLLLVIVAP-YQVQNLRGTQEGSIISLLI 210
           G+ G W AF+A+++RLFF    P  LE+P   +LL++V+P +   ++RGT  G++ISL I
Sbjct: 97  GDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFI 156

Query: 211 AAYLAFQHFSRAGSFRRAFDQ 229
             YL  +H   +G FR +F Q
Sbjct: 157 GCYLLQEHIRASGGFRNSFTQ 177

[Close]

BLAST of HG10021330 vs. ExPASy Swiss-Prot
Match: O23164 (Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=At4g37220 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 151 GEYGIWSAFLALLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGSIISLLI 210
           G++G W A +A++VRLFF    P  LEIP   +L+V+V+P  +   LR +  G++I L+I
Sbjct: 96  GDFGKWIALIAIIVRLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVI 155

Query: 211 AAYLAFQHFSRAGSFRRAFDQ-NSIVATVAVICV 241
           A YL  +H   +G F+ +F Q N I  T+ ++ +
Sbjct: 156 ACYLFHEHIKASGGFKNSFTQKNGISNTIGIVAL 189

[Close]

BLAST of HG10021330 vs. ExPASy Swiss-Prot
Match: Q9XIM7 (Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=COR413PM1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-06
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 151 GEYGIWSAFLALLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGSIISLLI 210
           GE G W AF+A++V+LFF       LE+P   +LL +VAP  +    R +  G  I L I
Sbjct: 94  GEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGI 153

Query: 211 AAYLAFQHFSRAGSFRRAFDQ-NSIVATVAVICV 241
             YL  +H   +G FR AF + N I  TV +IC+
Sbjct: 154 GCYLLQEHIRASGGFRNAFTKANGISNTVGIICL 187

[Close]

BLAST of HG10021330 vs. ExPASy TrEMBL
Match: A0A5D3DB21 (Cold-regulated 413 inner membrane protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00120 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 7.0e-83
Identity = 178/229 (77.73%), Postives = 185/229 (80.79%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCVSLSSAVSLY PS YKSKLSVPLSLRSS PNAKLS + AAK+SSICYNPL F VGSE
Sbjct: 1   MVCVSLSSAVSLYPPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           GIATA INKK++RGLSA CYAMP+N RTLQWVSTISSV                      
Sbjct: 61  GIATAGINKKKNRGLSAACYAMPVNTRTLQWVSTISSVVLMLAKGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
            IISLLIAAYLAFQHFSRAGSF+RAFDQNSIVATVAVIC+TAVSFL VI
Sbjct: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVICITAVSFLFVI 229

[Close]

BLAST of HG10021330 vs. ExPASy TrEMBL
Match: A0A1S3B961 (cold-regulated 413 inner membrane protein 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487404 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 7.0e-83
Identity = 178/229 (77.73%), Postives = 185/229 (80.79%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCVSLSSAVSLY PS YKSKLSVPLSLRSS PNAKLS + AAK+SSICYNPL F VGSE
Sbjct: 1   MVCVSLSSAVSLYPPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           GIATA INKK++RGLSA CYAMP+N RTLQWVSTISSV                      
Sbjct: 61  GIATAGINKKKNRGLSAACYAMPVNTRTLQWVSTISSVVLMLAKGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
            IISLLIAAYLAFQHFSRAGSF+RAFDQNSIVATVAVIC+TAVSFL VI
Sbjct: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVICITAVSFLFVI 229

[Close]

BLAST of HG10021330 vs. ExPASy TrEMBL
Match: A0A0A0LXM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G459500 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79
Identity = 174/229 (75.98%), Postives = 182/229 (79.48%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCVSLSSAVSLY PS YKSKLSVPLSLRSS PNAKLS + AAK+SSICYNPL F VGSE
Sbjct: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           G     INKK+SRGLSAVCYAMP+N RTLQW+STISSV                      
Sbjct: 61  G-----INKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
            IISLLIAAYLAFQHFSRAGSF+RAFDQNSIVATVAV+C+TAVSFL VI
Sbjct: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 224

[Close]

BLAST of HG10021330 vs. ExPASy TrEMBL
Match: A0A6J1K0I6 (cold-regulated 413 inner membrane protein 1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490472 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 2.0e-77
Identity = 171/229 (74.67%), Postives = 184/229 (80.35%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVCV LSSA+SL+SP L+KSKLS PLSLRSS PNAKL+F+PAAK+SSIC NP+ F  GS+
Sbjct: 1   MVCV-LSSAISLHSPFLHKSKLSAPLSLRSSLPNAKLTFNPAAKQSSICSNPIRFGFGSD 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
             +T AINKKR RGLSAVCYAMPL+AR LQW+STISSV                      
Sbjct: 61  VSSTLAINKKRRRGLSAVCYAMPLSARNLQWISTISSVILMLARGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           +IISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVA+ICVTAVSFLLVI
Sbjct: 181 TIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAIICVTAVSFLLVI 228

[Close]

BLAST of HG10021330 vs. ExPASy TrEMBL
Match: A0A6J1CH44 (cold-regulated 413 inner membrane protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111010803 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.4e-77
Identity = 167/229 (72.93%), Postives = 181/229 (79.04%), Query Frame = 0


Query: 53  MVCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSE 112
           MVC+SLSSA SL++ SLYK+KLS PLSLRS   +AKLS +PA KRSSICYNPL F VG+E
Sbjct: 1   MVCLSLSSATSLHTLSLYKTKLSAPLSLRSPPLHAKLSLNPAVKRSSICYNPLRFAVGNE 60

Query: 113 GIATAAINKKRSRGLSAVCYAMPLNARTLQWVSTISSV---------------------- 172
           GIATAAINK+RSRGL+ VCYAMPL AR +QW+STIS V                      
Sbjct: 61  GIATAAINKRRSRGLTTVCYAMPLTARNIQWISTISYVVLMLARGTGIQKSFIVPLFALQ 120

Query: 173 ----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 232
                     GEYGIW+AFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWTAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 233 SIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           SIISLLIAA+LAFQHFSRAGSFRRAFDQNSIVAT AV+CVTA SFLLVI
Sbjct: 181 SIISLLIAAFLAFQHFSRAGSFRRAFDQNSIVATAAVVCVTAASFLLVI 229

[Close]

BLAST of HG10021330 vs. TAIR 10
Match: AT1G29395.1 (COLD REGULATED 314 INNER MEMBRANE 1 )

HSP 1 Score: 169.1 bits (427), Expect = 4.5e-42
Identity = 103/230 (44.78%), Postives = 141/230 (61.30%), Query Frame = 0


Query: 54  VCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSEG 113
           +C+S S  VSL+    +       LSL+  S  + LS       S +C+NPL  +   + 
Sbjct: 4   LCLSSSRIVSLHHQKPF-------LSLKLRSRPSDLS-GLGRHTSPVCFNPLRLSGDRQR 63

Query: 114 IATAA--INKKRSRGLSAVCYAMPLNARTLQWVSTISSV--------------------- 173
            AT +  + K+R RG S VCYA P++A +LQW+STIS +                     
Sbjct: 64  TATVSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFAL 123

Query: 174 -----------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQE 233
                      GEYG+W+AFLAL+ RLFF  PGELE+PFI+LLLVIVAPYQV N+RG QE
Sbjct: 124 HAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQE 183

Query: 234 GSIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           G+II++ I+ +LAFQHFSRAGS  +A+++ S++ATVA+I VT VS LL++
Sbjct: 184 GAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVSLLLLL 225

[Close]

BLAST of HG10021330 vs. TAIR 10
Match: AT1G29390.1 (cold regulated 314 thylakoid membrane 2 )

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-41
Identity = 109/231 (47.19%), Postives = 136/231 (58.87%), Query Frame = 0


Query: 54  VCVSLSSAVSLYSPSLYKSKLSVPLSLRSSSPNAKLSFSPAAKRSSICYNPLMFTVGSEG 113
           +C+S S  V     SL+  K  + L LR    N           S +C+NPL  +   + 
Sbjct: 4   LCLSSSRIV-----SLHHQKPFLALKLRPRPSNIS---GLGHSTSVVCFNPLRLSADRQR 63

Query: 114 IAT--AAINKKRSRGLSAVCYAMP-LNARTLQWVSTISSV-------------------- 173
            AT  A   K+R RG S VCYA P L+   LQW+STIS V                    
Sbjct: 64  TATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFA 123

Query: 174 ------------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQ 233
                       GEYGIW+AFLALL RLFF  P ELE+PFI+LLLVIVAPYQV ++RG Q
Sbjct: 124 LQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQ 183

Query: 234 EGSIISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           EG+I+SL I+ +LAFQHFSRAG+ ++AFDQNS++ATVA+I VT VSFL +I
Sbjct: 184 EGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 226

[Close]

BLAST of HG10021330 vs. TAIR 10
Match: AT1G29390.2 (cold regulated 314 thylakoid membrane 2 )

HSP 1 Score: 158.7 bits (400), Expect = 6.1e-39
Identity = 91/167 (54.49%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 116 TAAINKKRSRGLSAVCYAMP-LNARTLQWVSTISSV------------------------ 175
           +A   K+R RG S VCYA P L+   LQW+STIS V                        
Sbjct: 17  SARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFALQAP 76

Query: 176 --------GEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGSI 235
                   GEYGIW+AFLALL RLFF  P ELE+PFI+LLLVIVAPYQV ++RG QEG+I
Sbjct: 77  MGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQEGAI 136

Query: 236 ISLLIAAYLAFQHFSRAGSFRRAFDQNSIVATVAVICVTAVSFLLVI 250
           +SL I+ +LAFQHFSRAG+ ++AFDQNS++ATVA+I VT VSFL +I
Sbjct: 137 LSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 183

[Close]

BLAST of HG10021330 vs. TAIR 10
Match: AT3G50830.1 (cold-regulated 413-plasma membrane 2 )

HSP 1 Score: 62.4 bits (150), Expect = 6.0e-10
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 151 GEYGIWSAFLALLVRLFF--FIPGELEIPFISLLLVIVAP-YQVQNLRGTQEGSIISLLI 210
           G+ G W AF+A+++RLFF    P  LE+P   +LL++V+P +   ++RGT  G++ISL I
Sbjct: 97  GDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFI 156

Query: 211 AAYLAFQHFSRAGSFRRAFDQ 229
             YL  +H   +G FR +F Q
Sbjct: 157 GCYLLQEHIRASGGFRNSFTQ 177

[Close]

BLAST of HG10021330 vs. TAIR 10
Match: AT4G37220.1 (Cold acclimation protein WCOR413 family )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 151 GEYGIWSAFLALLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGSIISLLI 210
           G++G W A +A++VRLFF    P  LEIP   +L+V+V+P  +   LR +  G++I L+I
Sbjct: 96  GDFGKWIALIAIIVRLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVI 155

Query: 211 AAYLAFQHFSRAGSFRRAFDQ-NSIVATVAVICV 241
           A YL  +H   +G F+ +F Q N I  T+ ++ +
Sbjct: 156 ACYLFHEHIKASGGFKNSFTQKNGISNTIGIVAL 189

The following BLAST results are available for this feature:

BLAST of HG10021330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896035.1	1.8e-85	79.48	cold-regulated 413 inner membrane protein 1, chloroplastic-like [Benincasa hispi...	[more]
XP_008443932.1	1.4e-82	77.73	PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Cucu...	[more]
XP_004147401.1	2.6e-79	75.98	cold-regulated 413 inner membrane protein 2, chloroplastic [Cucumis sativus] >KG...	[more]
XP_023542165.1	1.1e-77	73.82	cold-regulated 413 inner membrane protein 1, chloroplastic-like, partial [Cucurb...	[more]
XP_022994881.1	4.1e-77	74.67	cold-regulated 413 inner membrane protein 1, chloroplastic-like isoform X2 [Cucu...	[more]

BLAST of HG10021330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AL8	6.4e-41	44.78	Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thalia...	[more]
F4I1G5	3.2e-40	47.19	Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thalia...	[more]
Q9SVL6	8.4e-09	41.98	Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O23164	1.9e-08	38.30	Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9XIM7	3.9e-06	40.43	Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of HG10021330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB21	7.0e-83	77.73	Cold-regulated 413 inner membrane protein 2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B961	7.0e-83	77.73	cold-regulated 413 inner membrane protein 2, chloroplastic-like OS=Cucumis melo ...	[more]
A0A0A0LXM7	1.2e-79	75.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G459500 PE=3 SV=1	[more]
A0A6J1K0I6	2.0e-77	74.67	cold-regulated 413 inner membrane protein 1, chloroplastic-like isoform X2 OS=Cu...	[more]
A0A6J1CH44	3.4e-77	72.93	cold-regulated 413 inner membrane protein 1, chloroplastic-like OS=Momordica cha...	[more]

BLAST of HG10021330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29395.1	4.5e-42	44.78	COLD REGULATED 314 INNER MEMBRANE 1	[more]
AT1G29390.1	2.2e-41	47.19	cold regulated 314 thylakoid membrane 2	[more]
AT1G29390.2	6.1e-39	54.49	cold regulated 314 thylakoid membrane 2	[more]
AT3G50830.1	6.0e-10	41.98	cold-regulated 413-plasma membrane 2	[more]
AT4G37220.1	1.3e-09	38.30	Cold acclimation protein WCOR413 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008892	Cold-regulated 413 protein	PFAM	PF05562	WCOR413	coord: 151..240 e-value: 2.3E-33 score: 115.7
IPR008892	Cold-regulated 413 protein	PANTHER	PTHR33596	COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2	coord: 151..249 coord: 65..150
None	No IPR available	PANTHER	PTHR33596:SF17	COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 151..249
None	No IPR available	PANTHER	PTHR33596:SF17	COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 65..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021330.1	HG10021330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane