HG10020708 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10020708
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPUM-HD domain-containing protein
LocationChr05: 1712475 .. 1713595 (-)
RNA-Seq ExpressionHG10020708
SyntenyHG10020708
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGTGGCTATACTACTAGTCCTCCAGTTTCCTCAATTGTTGGGACCCATCTCAGACAGTGGTAATTTACCTCCGCTGTATGAGAATGCTGCTGCTGCATCAGCAATGGGAATGAGCGGCATAAGAGCATTCAGTGGATTGGCTTTAGGATCGAGTATGTTTGAAACAGCCAGCGAATTTCAAAATAACAACAGGTTGGAAAATCATAATGCAATGAATGGATCCATCTTACATTCAAGATTTGGGATCAAATGAATTTGCTGCTGCACAGGTGGCCGGGATTAGTGACCCTCCATTGAATGGCGAAAGTTTGATGGGTAATGGATATAAGGATGTATTGGAAAATCACAATTTGTTCTACCTTATTTTGGTAAATCTGGCAGTCTAAAATCATAGATTCATAACTACTATGGCAATCCAGGCTATGTTCTTGGCATGTCGTATCCTGGAAGTCCATTCGTAGGCATAAAAAGCCTAGCCTACGCAACCCATGTGCCATAAATTTTATCCCTTAATGAGGCTGTGATTCCCCCTCGAAGCATGTACCCATTTCAAATCGATGGACTTCAAAATTGTCGAGGGAATATGTACTGATTAGATTTAGTTCCTTCAATTAATTTGGTAGTTATTTATTTATTTCTTTAGTCATGGACAAGCATCTAACATATCCCTATTCTTCACTTCCACATTTGTCTTACAATACAGAAAGGAATTTTCCAACAAAAATCATAGTGGAGAATTTTTTCACAACCAATATTTCGTTTAGATGGTTGGTTTTTAGATCAAAAGCTAGATTTGATTATGCTTAACTAGCTTATAATATCTTAACTTGAAAATGAAATATAAATGAGAGCTCAATGACTCAATAAATAGAGTTGTTTCTAGGTAGGGTGAATTTTGATGTAGCTATTAGCAATGGAGAGATAGGTTTTGAAGCTATTGTTTATGATTCCCATGTCGAAATCATGATGTTCATGTAGAAACTCCATTCTTTCTTTGGATCAATTAAGTTGACTAAGGTTGTGGCCCTCCATGATGCCATCTCCAAGGTTGTCGAGGCTGGTACCAACCATTTTGGGTCGAGATTAACTCAAAGATCCTTTGGAACCTTCTGA

mRNA sequence

ATGGATTCAGTGGCTATACTACTAGTCCTCCAGTTTCCTCAATTGTTGGGACCCATCTCAGACAGTGGTAATTTACCTCCGCTGTATGAGAATGCTGCTGCTGCATCAGCAATGGGAATGAGCGGCATAAGAGCATTCAGTGGATTGGCTTTAGGATCGAATTTGGGATCAAATGAATTTGCTGCTGCACAGGTGGCCGGGATTAGTGACCCTCCATTGAATGGCGAAAGTTTGATGGGTAATGGATATAAGGATGTATTGGAAAATCACAATTTGTTCTACCTTATTTTGAAACTCCATTCTTTCTTTGGATCAATTAAGTTGACTAAGGTTGTGGCCCTCCATGATGCCATCTCCAAGGTTGTCGAGGCTGGTACCAACCATTTTGGGTCGAGATTAACTCAAAGATCCTTTGGAACCTTCTGA

Coding sequence (CDS)

ATGGATTCAGTGGCTATACTACTAGTCCTCCAGTTTCCTCAATTGTTGGGACCCATCTCAGACAGTGGTAATTTACCTCCGCTGTATGAGAATGCTGCTGCTGCATCAGCAATGGGAATGAGCGGCATAAGAGCATTCAGTGGATTGGCTTTAGGATCGAATTTGGGATCAAATGAATTTGCTGCTGCACAGGTGGCCGGGATTAGTGACCCTCCATTGAATGGCGAAAGTTTGATGGGTAATGGATATAAGGATGTATTGGAAAATCACAATTTGTTCTACCTTATTTTGAAACTCCATTCTTTCTTTGGATCAATTAAGTTGACTAAGGTTGTGGCCCTCCATGATGCCATCTCCAAGGTTGTCGAGGCTGGTACCAACCATTTTGGGTCGAGATTAACTCAAAGATCCTTTGGAACCTTCTGA

Protein sequence

MDSVAILLVLQFPQLLGPISDSGNLPPLYENAAAASAMGMSGIRAFSGLALGSNLGSNEFAAAQVAGISDPPLNGESLMGNGYKDVLENHNLFYLILKLHSFFGSIKLTKVVALHDAISKVVEAGTNHFGSRLTQRSFGTF
Homology
[Close]
BLAST of HG10020708 vs. NCBI nr
Match: XP_038889881.1 (pumilio homolog 1-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16
Identity = 60/110 (54.55%), Postives = 68/110 (61.82%), Query Frame = 0 

Query: 15  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------ 74
           ++G    SGNLPPLYENAAAASAMGMSG+  RAF+GLALGS+                  
Sbjct: 479 IVGTHLGSGNLPPLYENAAAASAMGMSGMNNRAFNGLALGSSMLETASEFQNNSRLENHN 538

Query: 75  -----------------LGSNEFAAAQVAGISDPPLNGESLMGNGYKDVL 88
                            LGSNE+AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 539 AMNSMQLPGLDPSYIQYLGSNEYAAAQVAGISDPPLDGESLMGNGYMDLL 588

[Close]
BLAST of HG10020708 vs. NCBI nr
Match: KAG7030709.1 (Pumilio-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 7.3e-15
Identity = 60/108 (55.56%), Postives = 65/108 (60.19%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASAMGMSG+  RAFSGLALGSN                         
Sbjct: 496 SGNLPPLYENAAAASAMGMSGMNTRAFSGLALGSNMLETANEFQKNNRLENHNAMNAMQL 555

Query: 82  ----------LGSNEF-----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++     AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 556 PALDPSYIQYLGSNDYAAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 603

[Close]
BLAST of HG10020708 vs. NCBI nr
Match: XP_023529763.1 (pumilio homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 7.3e-15
Identity = 60/108 (55.56%), Postives = 65/108 (60.19%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASAMGMSG+  RAFSGLALGSN                         
Sbjct: 493 SGNLPPLYENAAAASAMGMSGMNTRAFSGLALGSNMLETANEFQKNNRLENHNAMNAMQL 552

Query: 82  ----------LGSNEF-----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++     AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 553 PALDPSYIQYLGSNDYAAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 600

[Close]
BLAST of HG10020708 vs. NCBI nr
Match: KAG6600040.1 (Pumilio-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-15
Identity = 60/107 (56.07%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSG--IRAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASAMGMSG   RAFSGLALGSN                         
Sbjct: 496 SGNLPPLYENAAAASAMGMSGTNTRAFSGLALGSNMLETANEFQKNNRLENHNAMNAMQL 555

Query: 82  ----------LGSNEF----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++    AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 556 PALDPSYIQYLGSNDYAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 602

[Close]
BLAST of HG10020708 vs. NCBI nr
Match: XP_022994967.1 (pumilio homolog 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 59/107 (55.14%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASA+GMSG+  RAFSGLALGSN                         
Sbjct: 501 SGNLPPLYENAAAASALGMSGMNTRAFSGLALGSNMLETANEFQKNNRLENHNAMNAMQL 560

Query: 82  ----------LGSNEF----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++    AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 561 PALDPSYIQYLGSNDYAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 607

[Close]
BLAST of HG10020708 vs. ExPASy TrEMBL
Match: A0A6J1JXE0 (pumilio homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490546 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.0e-15
Identity = 59/107 (55.14%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASA+GMSG+  RAFSGLALGSN                         
Sbjct: 501 SGNLPPLYENAAAASALGMSGMNTRAFSGLALGSNMLETANEFQKNNRLENHNAMNAMQL 560

Query: 82  ----------LGSNEF----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++    AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 561 PALDPSYIQYLGSNDYAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 607

[Close]
BLAST of HG10020708 vs. ExPASy TrEMBL
Match: A0A6J1JXE6 (pumilio homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490546 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.0e-15
Identity = 59/107 (55.14%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASA+GMSG+  RAFSGLALGSN                         
Sbjct: 501 SGNLPPLYENAAAASALGMSGMNTRAFSGLALGSNMLETANEFQKNNRLENHNAMNAMQL 560

Query: 82  ----------LGSNEF----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++    AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 561 PALDPSYIQYLGSNDYAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 607

[Close]
BLAST of HG10020708 vs. ExPASy TrEMBL
Match: A0A6J1GX38 (pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458338 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 55/110 (50.00%), Postives = 66/110 (60.00%), Query Frame = 0 

Query: 15  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------ 74
           ++G    SGNLPPLYENAAAASAMGM+G+  R F+GLALGS+                  
Sbjct: 479 IVGTHLGSGNLPPLYENAAAASAMGMNGMNNRTFNGLALGSSMLETSGEFQNNNRSENHS 538

Query: 75  -----------------LGSNEFAAAQVAGISDPPLNGESLMGNGYKDVL 88
                            LGSNE+AAAQV G++DPPL+GESLMGNGY D+L
Sbjct: 539 AMSAMQLPALDPSYIQYLGSNEYAAAQVNGVNDPPLDGESLMGNGYMDLL 588

[Close]
BLAST of HG10020708 vs. ExPASy TrEMBL
Match: A0A6J1FLT6 (pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446979 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 59/107 (55.14%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 22  SGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------------- 81
           SGNLPPLYENAAAASAMGMSG+  RAFSGLALGS                          
Sbjct: 496 SGNLPPLYENAAAASAMGMSGMNTRAFSGLALGSKMLETANEFQKNNRLENHNAMNAMQL 555

Query: 82  ----------LGSNEF----AAAQVAGISDPPLNGESLMGNGYKDVL 88
                     LGSN++    AAAQVAGISDPPL+GESLMGNGY D+L
Sbjct: 556 PALDPSYIQYLGSNDYAAAAAAAQVAGISDPPLDGESLMGNGYMDLL 602

[Close]
BLAST of HG10020708 vs. ExPASy TrEMBL
Match: A0A0A0KQA7 (PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182720 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 56/110 (50.91%), Postives = 65/110 (59.09%), Query Frame = 0 

Query: 15  LLGPISDSGNLPPLYENAAAASAMGMSGI--RAFSGLALGSN------------------ 74
           ++G    SGNLPPLYENAAAASAMGMS +  RAF+GLALGS+                  
Sbjct: 481 IVGTHLGSGNLPPLYENAAAASAMGMSALNNRAFNGLALGSSMLETASEFQNNNRLENHN 540

Query: 75  -----------------LGSNEFAAAQVAGISDPPLNGESLMGNGYKDVL 88
                            LGSNE+AAAQV GISDPPL+ +SLMGNGY D+L
Sbjct: 541 AMNGMQLSGLDPSYIQYLGSNEYAAAQVGGISDPPLDSDSLMGNGYMDLL 590

The following BLAST results are available for this feature:
BLAST of HG10020708 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038889881.13.0e-1654.55pumilio homolog 1-like [Benincasa hispida][more]
KAG7030709.17.3e-1555.56Pumilio-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023529763.17.3e-1555.56pumilio homolog 1-like [Cucurbita pepo subsp. pepo][more]
KAG6600040.19.5e-1556.07Pumilio-like 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022994967.11.2e-1455.14pumilio homolog 1-like isoform X2 [Cucurbita maxima][more]
BLAST of HG10020708 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10020708 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JXE06.0e-1555.14pumilio homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490546 PE... [more]
A0A6J1JXE66.0e-1555.14pumilio homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490546 PE... [more]
A0A6J1GX381.3e-1450.00pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458338 PE=4 SV=1[more]
A0A6J1FLT61.3e-1455.14pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446979 PE=4 SV=1[more]
A0A0A0KQA71.8e-1450.91PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182720 PE=4... [more]
BLAST of HG10020708 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10020708.1HG10020708.1mRNA