HG10020703 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020703
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 1668523 .. 1668747 (+)
RNA-Seq Expression	HG10020703
Synteny	HG10020703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of HG10020703 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 5.2e-28
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1   MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
           MARLMREI S+NGSFG AGG+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61  GGGCAAGCGAGCGA 75
           GGGCAAGCGAGCGA
Sbjct: 89  GGGCAAGCGAGCGA 102

[Close]

BLAST of HG10020703 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 5.7e-27
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMS-KERNSTADVEL 60
          MARLMRE GS+NGSFG A GDIYLLFWAALFTLCIIST+IFSCSDGMS K+RNSTADVEL
Sbjct: 1  MARLMREFGSQNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60

Query: 61 YGGGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGAGCAAGCGAGCGA 74

[Close]

BLAST of HG10020703 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          MARL+ EIGS +GSFG + GDI  LF AALFTLCIIS + FSCSDG+SKERNSTADVELY
Sbjct: 1  MARLIGEIGSVDGSFGLS-GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60

Query: 61 GGGCAAGCGA 71
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

[Close]

BLAST of HG10020703 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M RL R++ S +GS G AG   +++ W AL  +CIIS +IFSC+DG+SKE+ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG---FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of HG10020703 vs. NCBI nr
Match: KAF3438595.1 (hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis])

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-15
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 5  MREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGC 64
          M  + S +GS  +AG  +YL  W AL ++CI+S +IFSC+DG+SKE+ STAD ELYGGGC
Sbjct: 1  MVRLSSVDGSSSYAGFLVYL--WLALLSVCILSAIIFSCTDGVSKEKTSTADTELYGGGC 60

Query: 65 AAGCGAGCGA 75
          AAGCGAGCGA
Sbjct: 61 AAGCGAGCGA 68

[Close]

BLAST of HG10020703 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          MARLMREI S+NGSFG AGG+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of HG10020703 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M RL R++ S +GS G AG   +++ W AL  +CIIS +IFSC+DG+SKE+ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG---FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of HG10020703 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M RL RE+ + +G  G   G   +     L TLCI+ST+IFSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of HG10020703 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M RL RE+ + +G  G   G   +     L TLCI+ST+IFSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of HG10020703 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-15
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALF-TLCIISTVIFSCSDGMSKERNSTADVEL 60
          M RL RE    +G  G +    +L+F+  L  TLCI+ST+IFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 74
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of HG10020703 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 20 GDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG 74
          G++ L  WAA+    +I+ VIFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of HG10020703 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-05
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 17 FAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGC-AAGCGAGCG 74
          F    ++ + + A+   CI+S ++FSC+DG+S  R +T+     GGGC  AGCG GCG
Sbjct: 19 FDASYLFHVVFLAVIGCCILSALLFSCADGVSDNR-ATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of HG10020703 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652552.1	5.2e-28	86.49	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6584341.1	5.7e-27	89.33	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572949.1	4.0e-20	80.00	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	1.3e-15	63.51	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
KAF3438595.1	6.5e-15	62.86	hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis]	[more]

BLAST of HG10020703 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10020703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	2.5e-28	86.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A6P3ZT85	6.4e-16	63.51	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A803R005	2.4e-15	58.11	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	2.4e-15	58.11	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2P5AQX4	9.2e-15	59.46	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]

BLAST of HG10020703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	1.2e-06	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	5.0e-05	41.38	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..74
None	No IPR available	PANTHER	PTHR37199:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020703.1	HG10020703.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane