HG10019382 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019382
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LysM domain-containing protein
Location	Chr04: 21164560 .. 21167853 (+)
RNA-Seq Expression	HG10019382
Synteny	HG10019382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGGGCGGATGAACGGAAATGGGAATTGTGATTATAGTTATGAGAGCAATGGATATCATTCATTAGATCTAGTGGATGTCTACGGAGACAACACGCCTGATGGAAGAAGCTCTGGGAAGACGTCGCAGGTTGCATCTCCTTCGAATTGCATCGTTCATCCGGTTTCTAAATTAGATACTCTTGCTGGAGTTGCAATCAAGTATGGTGTTGAGGTAAACCACATTTCAGAATTTTGAATGAGTTTATAGTATAAAGAGAAGTTTTGAATTTGCATTAGGCTGTAATGTTCTCATATTTCTTTCAGTCGACTTTATGATGGGAAAACAATGAAATGATGATTTCAAAATGTTTTTGCTTTATATTGTTGTTATATTGGCGTGTCAGATGTTACTTTTTTTCCTCTTTTTATTTTTAATTTTTTTATAATGAATCTATGATTCATACCGACAAAGCTAGAATTACTCTCTTTCCTCTTTGTCCTGGCATGATTTCTAAAGTTCCCAGATCGATGACAACTCATTCAAGTTGAATTTTCTGCAATAACCAAATGAGGCTTACGACAACTTTATATTGAAAATTGAATGAACCAGAACCTTTTTCCTTTACCCCCCTCCTGAGATAATCATTAGACTAGCATGGATTATGTACAGATGTTCATCAGATCTTCTTTCCTGTTTTCCAACTTAATATGACATTTTCGAAGTATGACTATCCAGGTAAGAAGGGGCAGAGCCGGAGTTTAAATTAAGGAAAATATCAATTTATACCTAAAAGTTTGGGATTGTATCACTAAGAATTATATCAATTTATATCATTTGGGTAAAGTTACCTTTGAAAGTGGTCCATTAGAATTGGTCCATGCATCTATTTTAATAGTCCATTTTGTTAATCATACCTTAGAATAAAAGTCTACTCATGTCTACGAATTGATGCGTTGATGATTTTCAAAAGTAATTTTAATAAAATGTCTAAATTGATTCACCGTGATAATTTAAGAGTTTAATTGAAATAATTATATGTTTGACACGAAGCTTGACGGAGGGTCGAGGGTATAAACTAATATGTTTATGAAAGTTTAAGGTTTACATTGATATTAGTTAAGGGTTTTAATTGATACAATTTCCAAAGTCTAGAGTATAAATTGATATTTTCCCCAAAAGTTAACCCGGCCTAAAATCAATAATAATTTTATAGGAAAATCATGATATTTATTGAAAAAAATAGAAATCAAAGGATCAAAGGGTCAAAGTTTTTATTTCTCAGTTATTCTTGTTTAATGAGAGTTAAAGAATACTAATATGGGTTTCCCACCCTCTATACTTGGCTTCTCCACTGAAATAGTAAGAGTTTGCTTGTGGTAATCATATAGTAGAAAATTTCACTCCAAAATCTGAAAATTTCTTTCATCTACCATCGATACTATTTTGTGATATTATTTGTTATTGGGTTATTTTAATGAAAATTCGATTTCTTTTCAAACAAAAAGATTGTGATGTGGTCATAAATTATCACTGTCTTCAAGTATAATTTTTTGCAATAAAATGAGTCTCTTATAGGTGGAAACTGTAATAATTGTTTATGGTGATTCGCCAGGTCGCAGATATAAAGAAGATGAATGGGCTAGTTACAGACTTTCAAATGTTTGCTCTTAAATCTCTTCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGTCTATTAGAATGTCTAAACACTCCAGGGTATGTGTTTGCTATTTTGATATCTTTCATACTGTTTTCACATATTATTGCATAAGAGTGATTTGAATTGACTCGTTGAGCTGTGTTCAACGCCGTGTTTGAGTTTGGTATTGACTTGCAGAATAGTTATTGGCCATATAGGGCTTGAGGTTAAGGTTGGGGTTCAAATAGTATTTCTATCTGGAAAACTGTGCTTGGAGTGGCCTAAGGGAAGCCATGAAGAAAGTAAATAACATACCAGTGGAGCCAGGGCCATTATTTTATGCTTGGCGCCTTAGGTCTTTAATGGTTCTTTTTCTGATAGAGGTCATAAGTTGGAATAGTGTATACTGAATAGTTCTTTTGCTGTAGGAATTGTTGGTGATCGTTGAACAGTGGCACTGATTGTGATTTGTGAGTGTGGATGCTCAGGTGGTTGGTTTATTATGCAAAATTTAATGTTAACTAACTACATGTTGAACATATAAAGAAATTTAAAAGGTTACAATTGTTATGAATAATCTACCTGGAGTCTCATTCATGGCACATCCATCATAAATATAATACCACCAAGAACCTATCTATCTTGCTTGAAACCCATACAGATGTTAGTGTTTAAAAATAGTTCACCATTGTTGATTTAATTCGCAAAAAATTTGCTTATAATTCTTTATTCCCAAGTGTGTAAACTTCCACATTGAAATTCATCCCAAGTGATGTATTTAATACACTATGTTCGTTACAATACAATAAGAAATGGATGATTATAAATTTTTCACCCAGTATGTTGTGTTGATAAGAGGATCCTTTTGCAGACAGAGCAGCTCCGAAAAGACTCCAAGTCAACGTCTTTCGTCGGAATTCTTTGAATCTTTCCAGTCCCTCAAATTGAAGTCTTCCGATCAAAAGGTGTCCCCAGCCATGAGCTCTTTACAAGGTTACTATGGGCTCAAACCATCTGATCAGAACAGCAGAATTGACGGTTTTGACATGGCAGTGTACAGAAAAGGAGCCTCCCATTATTTAGAAGACGCGCACGTTTCTGGGACCCCACAGCATTCGGATTTACTAACACATCACCATCGAAAATCCAAGAGTTTAGTGAATGGATTTTTGGGTGAGAAAGGAGAGGTGGGTGATCTGCAATCTGCTGAAGCCGGGGATGGAGATCCCAAATGGAGCGATAAATTGATCAGAAGGCGCCAGAAATCAGTAGCTGACTTTTCGCATTCGCCTGAAACGCTTTTGAAAGATGACAACAGCAATGGTGGTAGTAACGGCTTCTCATCCTCTGCTGGAAAAGGCTTATTGGCTCAAAGACCCAAAACTTCTAGTAGAGCGAATTTGGTAAGTGACAATGAAGTCGGATTGATTCCAATTCCGATTGGTCTGGGGGATTCGTTCGTGGCTGCTGATGGATTTGCTGCGTTCAGGAAGTCATCGAGTACATCGAGTTTGCCAGATCAAGAAAATGGCATCACTTCATCAATCTGGTCTCAGGCAATTTCAACTGCTTCGAGACCAATATTTGATGGGTTGCCAAAACCTTTAACAGGTCGAAGAAACAAAGCTGCACTTGATTAG

mRNA sequence

ATGGAAAGGGGGCGGATGAACGGAAATGGGAATTGTGATTATAGTTATGAGAGCAATGGATATCATTCATTAGATCTAGTGGATGTCTACGGAGACAACACGCCTGATGGAAGAAGCTCTGGGAAGACGTCGCAGGTTGCATCTCCTTCGAATTGCATCGTTCATCCGGTTTCTAAATTAGATACTCTTGCTGGAGTTGCAATCAAGTATGGTGTTGAGGTCGCAGATATAAAGAAGATGAATGGGCTAGTTACAGACTTTCAAATGTTTGCTCTTAAATCTCTTCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGTCTATTAGAATGTCTAAACACTCCAGGTAACGGCTTCTCATCCTCTGCTGGAAAAGGCTTATTGGCTCAAAGACCCAAAACTTCTAGTAGAGCGAATTTGGTAAGTGACAATGAAGTCGGATTGATTCCAATTCCGATTGGTCTGGGGGATTCGTTCGTGGCTGCTGATGGATTTGCTGCGTTCAGGAAGTCATCGAGTACATCGAGTTTGCCAGATCAAGAAAATGGCATCACTTCATCAATCTGGTCTCAGGCAATTTCAACTGCTTCGAGACCAATATTTGATGGGTTGCCAAAACCTTTAACAGGTCGAAGAAACAAAGCTGCACTTGATTAG

Coding sequence (CDS)

ATGGAAAGGGGGCGGATGAACGGAAATGGGAATTGTGATTATAGTTATGAGAGCAATGGATATCATTCATTAGATCTAGTGGATGTCTACGGAGACAACACGCCTGATGGAAGAAGCTCTGGGAAGACGTCGCAGGTTGCATCTCCTTCGAATTGCATCGTTCATCCGGTTTCTAAATTAGATACTCTTGCTGGAGTTGCAATCAAGTATGGTGTTGAGGTCGCAGATATAAAGAAGATGAATGGGCTAGTTACAGACTTTCAAATGTTTGCTCTTAAATCTCTTCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGTCTATTAGAATGTCTAAACACTCCAGGTAACGGCTTCTCATCCTCTGCTGGAAAAGGCTTATTGGCTCAAAGACCCAAAACTTCTAGTAGAGCGAATTTGGTAAGTGACAATGAAGTCGGATTGATTCCAATTCCGATTGGTCTGGGGGATTCGTTCGTGGCTGCTGATGGATTTGCTGCGTTCAGGAAGTCATCGAGTACATCGAGTTTGCCAGATCAAGAAAATGGCATCACTTCATCAATCTGGTCTCAGGCAATTTCAACTGCTTCGAGACCAATATTTGATGGGTTGCCAAAACCTTTAACAGGTCGAAGAAACAAAGCTGCACTTGATTAG

Protein sequence

MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPGNGFSSSAGKGLLAQRPKTSSRANLVSDNEVGLIPIPIGLGDSFVAADGFAAFRKSSSTSSLPDQENGITSSIWSQAISTASRPIFDGLPKPLTGRRNKAALD

Homology

[Close]

BLAST of HG10019382 vs. NCBI nr
Match: XP_038906142.1 (uncharacterized protein LOC120092022 [Benincasa hispida])

HSP 1 Score: 354.0 bits (907), Expect = 9.4e-94
Identity = 211/372 (56.72%), Postives = 212/372 (56.99%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHPVSKL 60
           MERGRMNGNGNCDYSYESNGYHSLDLVDVYGD+T D RSSGKTSQVAS SNCIVHPVSKL
Sbjct: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDSTLDRRSSGKTSQVASSSNCIVHPVSKL 60

Query: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG--- 120
           DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNTPG   
Sbjct: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTPGQSS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SEKTPSQLLSSEFFESFQSLKLKSSDQRVSPAMSSLQGYYGLKPSDQKSRIDGFEMAVYR 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 SGVSHYLEDEPVSGTPQHSDLLTHHHRKSKSLVNGFLGEKGESGDPQSAEAGDGDPKWSD 240

[Close]

BLAST of HG10019382 vs. NCBI nr
Match: XP_004148571.1 (uncharacterized protein LOC101221951 [Cucumis sativus] >KGN58512.1 hypothetical protein Csa_002318 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 2.3e-92
Identity = 207/373 (55.50%), Postives = 212/373 (56.84%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHPVSKL 60
           MERGRMNGNGNCDYS ESNGYHSLDL DVYG+NTPDGRSSGKTSQV+S SNCIVHPVSK 
Sbjct: 1   MERGRMNGNGNCDYSCESNGYHSLDLADVYGENTPDGRSSGKTSQVSSSSNCIVHPVSKF 60

Query: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG--- 120
           DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNT G   
Sbjct: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTAGQSS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 AERSPNRLSSEFFESFQSLKLKSSDQRVSPAMSSLQGYYGLKPSDQRSRTDGLEMAVYMK 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 GASHYLEDVPVYGTSQHLDFLLTHHHRKSKSLVNGCLGEKGEVSDDVQSIEAGDGDNKLS 240

[Close]

BLAST of HG10019382 vs. NCBI nr
Match: XP_008461847.1 (PREDICTED: uncharacterized protein LOC103500354 [Cucumis melo] >KAA0052766.1 Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK04190.1 Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 3.3e-91
Identity = 207/372 (55.65%), Postives = 210/372 (56.45%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQV-ASPSNCIVHPVSK 60
           MERGRMNGNGNCDYS ESNGYHSLDLVDVYG+NTPDGRSSGKTSQV +S SNCIVHPVSK
Sbjct: 1   MERGRMNGNGNCDYSCESNGYHSLDLVDVYGENTPDGRSSGKTSQVSSSSSNCIVHPVSK 60

Query: 61  LDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG-- 120
            DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNTPG  
Sbjct: 61  FDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTPGQS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SSETTPSRLSSEFFESFQSLKLKSSHQRVSPAMSSLQGYYGLKPSDQKNRTVGLEMALYR 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 KGASHYLEDVPVSGTSHHLDLLTHHHKKSKSLVNGCLGEKGEVSDLQSIEAGDGDSKLSD 240

[Close]

BLAST of HG10019382 vs. NCBI nr
Match: XP_023528753.1 (uncharacterized protein LOC111791593 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 5.3e-81
Identity = 199/380 (52.37%), Postives = 204/380 (53.68%), Query Frame = 0


Query: 1   MERGRMNGNGN----CDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHP 60
           MERGRMNGNGN     DYSYESNGYH+LDLVDVYG+NTP GR SGKTSQVAS SNCIVHP
Sbjct: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60

Query: 61  VSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTP 120
           VSK DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNT 
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120

Query: 121 G----------------------------------------------------------- 180
           G                                                           
Sbjct: 121 GQSSSEKTPSRLSSEFFESFQSLKLKSSEQRVSPAMSSLQGYYGLKPLDQKSKIDGGYEM 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 GKGGSHYLEDVPVSGTPDLLTHHHRKTKSLVNGFLGEKGDLTDLQSVEAGDGDPKWNDKL 240

[Close]

BLAST of HG10019382 vs. NCBI nr
Match: XP_023524813.1 (uncharacterized protein LOC111788632 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 5.3e-81
Identity = 193/383 (50.39%), Postives = 206/383 (53.79%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVY-GDNTPDGRSSGKTSQVASPSNCIVHPVSK 60
           MERGRMNGNG CDYSYESNG+H+LDLVDVY G++TP+GRSSGKTSQ +SP++CI+HPVSK
Sbjct: 1   MERGRMNGNGICDYSYESNGFHALDLVDVYGGESTPNGRSSGKTSQGSSPTSCILHPVSK 60

Query: 61  LDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG-- 120
           LDTLAGVAIKYGVEVADI+KMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE L+TPG  
Sbjct: 61  LDTLAGVAIKYGVEVADIRKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEELSTPGQS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SSERTPSARLSSDFFESFQSLKLKSSEQRISSAMSSLQGYYGLKPSDQRSRINGFDTAVY 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 SEGASHDSEDMLVSGTSQYLDLLMPHHRKSRSSVNGFLGDKVEVADLQSAEAGGDGDPKW 240

[Close]

BLAST of HG10019382 vs. ExPASy Swiss-Prot
Match: Q3B7I8 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus tropicalis OX=8364 GN=lysmd2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 38  RSSGKTSQVASP--SNCIVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSL 97
           RS G T+ VA+P     I H +S  DTL G+A+KYGV +  IK+ N L +   +F  KSL
Sbjct: 44  RSYGSTASVAAPLSERYIEHRLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSL 103

Query: 98  QIPL 100
            IP+
Sbjct: 104 NIPV 107

[Close]

BLAST of HG10019382 vs. ExPASy Swiss-Prot
Match: Q3KPL3 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus laevis OX=8355 GN=lysmd2 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 3.8e-05
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 38  RSSGKTSQVASP--SNCIVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSL 97
           RS G T  VA+P     I H +S  DTL G+A+KYGV +  IK+ N L +   +F  KSL
Sbjct: 42  RSYGSTGSVAAPLAERYIEHCLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSL 101

Query: 98  QIPL 100
            IP+
Sbjct: 102 NIPV 105

[Close]

BLAST of HG10019382 vs. ExPASy Swiss-Prot
Match: Q99LE3 (LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Mus musculus OX=10090 GN=Lysmd3 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.5e-05
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQI-------------PLPGRH---- 120
           DTL  VA++Y   VADIK++N L++D   FAL+S++I             PL GRH    
Sbjct: 73  DTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKRFSSLTETLHPLKGRHILHP 132

Query: 121 PPSPCLLECLNTPGNGFSSSA 125
           PP P   E    P +G  SS+
Sbjct: 133 PPVPYFQEQDIVPADGSLSSS 153

[Close]

BLAST of HG10019382 vs. ExPASy Swiss-Prot
Match: Q1JQA8 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Bos taurus OX=9913 GN=LYSMD2 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 38  RSSGKTSQVASPSNC------IVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFA 97
           RS G T+ V +P         + H V   DTL G+A+KYGV +  IK+ N L T+  +F 
Sbjct: 51  RSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFL 110

Query: 98  LKSLQIPLPGRHPPSPCLLECLNTPGN 119
            K+L IP+    P     L  +++P N
Sbjct: 111 KKTLNIPVISEKPLLFNGLNSVDSPEN 137

[Close]

BLAST of HG10019382 vs. ExPASy Swiss-Prot
Match: Q8IV50 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=LYSMD2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 38  RSSGKTSQVASPSNC------IVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFA 97
           RS G T+ V +P         + H V   DTL G+A+KYGV +  IK+ N L T+  +F 
Sbjct: 50  RSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFL 109

Query: 98  LKSLQIPLPGRHPPSPCLLECLNTPGN 119
            K+L IP+    P     L  +++P N
Sbjct: 110 KKTLNIPVISEKPLLFNGLNSIDSPEN 136

[Close]

BLAST of HG10019382 vs. ExPASy TrEMBL
Match: A0A0A0LCX1 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G653440 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 207/373 (55.50%), Postives = 212/373 (56.84%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHPVSKL 60
           MERGRMNGNGNCDYS ESNGYHSLDL DVYG+NTPDGRSSGKTSQV+S SNCIVHPVSK 
Sbjct: 1   MERGRMNGNGNCDYSCESNGYHSLDLADVYGENTPDGRSSGKTSQVSSSSNCIVHPVSKF 60

Query: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG--- 120
           DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNT G   
Sbjct: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTAGQSS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 AERSPNRLSSEFFESFQSLKLKSSDQRVSPAMSSLQGYYGLKPSDQRSRTDGLEMAVYMK 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 GASHYLEDVPVYGTSQHLDFLLTHHHRKSKSLVNGCLGEKGEVSDDVQSIEAGDGDNKLS 240

[Close]

BLAST of HG10019382 vs. ExPASy TrEMBL
Match: A0A5D3BYK1 (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00160 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 207/372 (55.65%), Postives = 210/372 (56.45%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQV-ASPSNCIVHPVSK 60
           MERGRMNGNGNCDYS ESNGYHSLDLVDVYG+NTPDGRSSGKTSQV +S SNCIVHPVSK
Sbjct: 1   MERGRMNGNGNCDYSCESNGYHSLDLVDVYGENTPDGRSSGKTSQVSSSSSNCIVHPVSK 60

Query: 61  LDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG-- 120
            DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNTPG  
Sbjct: 61  FDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTPGQS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SSETTPSRLSSEFFESFQSLKLKSSHQRVSPAMSSLQGYYGLKPSDQKNRTVGLEMALYR 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 KGASHYLEDVPVSGTSHHLDLLTHHHKKSKSLVNGCLGEKGEVSDLQSIEAGDGDSKLSD 240

[Close]

BLAST of HG10019382 vs. ExPASy TrEMBL
Match: A0A1S3CG46 (uncharacterized protein LOC103500354 OS=Cucumis melo OX=3656 GN=LOC103500354 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 207/372 (55.65%), Postives = 210/372 (56.45%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQV-ASPSNCIVHPVSK 60
           MERGRMNGNGNCDYS ESNGYHSLDLVDVYG+NTPDGRSSGKTSQV +S SNCIVHPVSK
Sbjct: 1   MERGRMNGNGNCDYSCESNGYHSLDLVDVYGENTPDGRSSGKTSQVSSSSSNCIVHPVSK 60

Query: 61  LDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG-- 120
            DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNTPG  
Sbjct: 61  FDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTPGQS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SSETTPSRLSSEFFESFQSLKLKSSHQRVSPAMSSLQGYYGLKPSDQKNRTVGLEMALYR 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 KGASHYLEDVPVSGTSHHLDLLTHHHKKSKSLVNGCLGEKGEVSDLQSIEAGDGDSKLSD 240

[Close]

BLAST of HG10019382 vs. ExPASy TrEMBL
Match: A0A6J1J3A0 (uncharacterized protein LOC111481449 OS=Cucurbita maxima OX=3661 GN=LOC111481449 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.4e-81
Identity = 199/381 (52.23%), Postives = 204/381 (53.54%), Query Frame = 0


Query: 1   MERGRMNGNGN--CDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHPVS 60
           MERGRMNGNGN   DYSYESNGYH+LDLVDVYG+NTP GRSSGKTSQVAS SNCIVHPVS
Sbjct: 1   MERGRMNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRSSGKTSQVASSSNCIVHPVS 60

Query: 61  KLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG- 120
           K DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLE LNT G 
Sbjct: 61  KFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTSGQ 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SSSEKTPSRLSSEFFESFQSLKLKSSEQRVSPAMSSLQGYYGLKPLDQKSKIDGGYEMAV 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 YGKGGSHYLEDVPVSGTPDLLTHHHRKTKSLVNGFMGEKGDLTDLQSVEAGDGDPKWNDK 240

[Close]

BLAST of HG10019382 vs. ExPASy TrEMBL
Match: A0A6J1DGQ0 (uncharacterized protein LOC111020702 OS=Momordica charantia OX=3673 GN=LOC111020702 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.7e-80
Identity = 194/382 (50.79%), Postives = 202/382 (52.88%), Query Frame = 0


Query: 1   MERGRMNGNGNCDYSYESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNCIVHPVSKL 60
           MERGRMNGNGN D+SYESNGYH+LDL DVYG++TP+GRS GKTSQVAS  NCIVHPVSKL
Sbjct: 1   MERGRMNGNGNYDFSYESNGYHALDLGDVYGESTPNGRSPGKTSQVASSPNCIVHPVSKL 60

Query: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLECLNTPG--- 120
           DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLL+   TPG   
Sbjct: 61  DTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLDGSITPGQSS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 SERTPSQRLSSDFFESFQSLKLKPSEQRVSPAMSSLQGYYGLKSSDQKSRNDGFEMAVWK 180

Query: 181 ------------------------------------------------------------ 220
                                                                       
Sbjct: 181 GTSHYLEDVPISGTQQLSDLLLMHHHRKSKSLVNGFVGEKGAMADVQSAEAGDVDPKWNE 240

[Close]

BLAST of HG10019382 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 105.1 bits (261), Expect = 7.1e-23
Identity = 70/162 (43.21%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 2   ERGRMNGNGNCDYS----YESNGYHSLDLVDVYGDNTPDGRSSGKTSQVASPSNC----- 61
           ER     NG  +YS     + NG+  LD ++   + +P      K  ++ SP++      
Sbjct: 6   ERRSSGRNGTPEYSNGKFRDDNGFGFLDRLENCREKSP---PRSKILRIPSPTSSPPPSS 65

Query: 62  ---------------IVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQI 121
                          I H +SK DTLAGVAIKYGVEVAD+KKMN LVTD QMFALKSLQI
Sbjct: 66  SSPPFHGSNSPDRGYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQI 125

Query: 122 PLPGRHPPSPCLLECLNTPGNGFSSSAGKGLLAQRPKTSSRA 140
           PLPGRHPPSPCL        NG S + G+G     P++ + +
Sbjct: 126 PLPGRHPPSPCL-------SNG-SLNHGEGCSCHEPESPNHS 156

HSP 2 Score: 77.0 bits (188), Expect = 2.1e-14
Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 105 PSPCLLECLNTPGNGFSSSAGKGLLAQRPKTSSRANLVSDNEVG-LIPIPIGLGDSFVAA 164
           P   L E   +   GF S AGKG LA R K SSR NL +++E G   P+ + L D+ V +
Sbjct: 283 PELVLKEENGSSNGGFLSIAGKG-LALRSKASSRTNLAAESENGNFNPVSMNLMDAPV-S 342

Query: 165 DGFAAFRKSSSTSSLPDQE---NGITSSIW------------SQAISTASRPIFDGLPKP 220
           D F++ RKSSS SSL D +   N  + S+W            + A  T+S  IFDGLPKP
Sbjct: 343 DSFSSVRKSSSASSLQDPDGNSNNGSLSLWPTSKWSLKPDLLTPAAITSS--IFDGLPKP 402

[Close]

BLAST of HG10019382 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 68/138 (49.28%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 2   ERG-RMNG-NGNCDYSYES-NGYHSLDLVDVYGDNTPDGRSS---------GKTSQVASP 61
           ERG R++G NG+ ++S     GY  +D    + + +P    S           +S  +S 
Sbjct: 4   ERGRRISGFNGSFEFSNRKFRGYGFVDRSQGFHERSPSRSCSVSKILRITPPTSSPPSSA 63

Query: 62  SNC---IVHPVSKLDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPS 121
           S C   I H VSK DTLAG+AIKYGVEVADI K+NGLVTD QMFAL+SL+IPLPGRHPPS
Sbjct: 64  STCAGYIEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPLPGRHPPS 123

Query: 122 PCLLECLNTPGNGFSSSA 125
           PCL       G  +S  A
Sbjct: 124 PCLSNGSLNHGEDWSEQA 141

HSP 2 Score: 68.9 bits (167), Expect = 5.6e-12
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 105 PSPCLLECLNTPGNGFSSSAGKGLLAQRPKTSSRANLVSDNEVGLIPIPIGLGDSFVAAD 164
           P   L E   +    FS+ AGK  LA R K SSRANL ++    L  IPI L D+ V  D
Sbjct: 275 PELLLKEENRSSSGAFSAIAGKN-LALRSKASSRANLSAETR-HLNSIPINLMDAPV-GD 334

Query: 165 GFAAFRKSSSTSSLPDQE-NGITSSIWSQAIST----------ASRPIFDGLPKPLTGRR 220
            F++ RKS S SSL +   N   SS+W  +  T           +  IFDGLPKPLTGRR
Sbjct: 335 SFSSVRKSVSASSLQEPNCNSNGSSLWPTSKWTLKPELLTQVAMASSIFDGLPKPLTGRR 394

The following BLAST results are available for this feature:

BLAST of HG10019382 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906142.1	9.4e-94	56.72	uncharacterized protein LOC120092022 [Benincasa hispida]	[more]
XP_004148571.1	2.3e-92	55.50	uncharacterized protein LOC101221951 [Cucumis sativus] >KGN58512.1 hypothetical ...	[more]
XP_008461847.1	3.3e-91	55.65	PREDICTED: uncharacterized protein LOC103500354 [Cucumis melo] >KAA0052766.1 Pep...	[more]
XP_023528753.1	5.3e-81	52.37	uncharacterized protein LOC111791593 [Cucurbita pepo subsp. pepo]	[more]
XP_023524813.1	5.3e-81	50.39	uncharacterized protein LOC111788632 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10019382 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3B7I8	2.2e-05	45.31	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus t...	[more]
Q3KPL3	3.8e-05	45.31	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus l...	[more]
Q99LE3	8.5e-05	39.51	LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Mus muscu...	[more]
Q1JQA8	1.4e-04	35.63	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Bos tauru...	[more]
Q8IV50	1.4e-04	35.63	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Homo sapi...	[more]

BLAST of HG10019382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCX1	1.1e-92	55.50	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G653440 PE=4 S...	[more]
A0A5D3BYK1	1.6e-91	55.65	Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucu...	[more]
A0A1S3CG46	1.6e-91	55.65	uncharacterized protein LOC103500354 OS=Cucumis melo OX=3656 GN=LOC103500354 PE=...	[more]
A0A6J1J3A0	4.4e-81	52.23	uncharacterized protein LOC111481449 OS=Cucurbita maxima OX=3661 GN=LOC111481449...	[more]
A0A6J1DGQ0	3.7e-80	50.79	uncharacterized protein LOC111020702 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of HG10019382 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08200.1	7.1e-23	43.21	peptidoglycan-binding LysM domain-containing protein	[more]
AT5G23130.1	1.2e-22	49.28	Peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 54..98 e-value: 0.0027 score: 27.0
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 53..97 score: 11.612978
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 61..97 e-value: 1.16899E-5 score: 39.3909
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 38..104 e-value: 1.3E-11 score: 45.8
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 53..98
None	No IPR available	PANTHER	PTHR20932:SF36	PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN	coord: 38..117
None	No IPR available	PANTHER	PTHR20932:SF36	PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN	coord: 118..219
IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 118..219
IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 38..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019382.1	HG10019382.1	mRNA