HG10019158 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019158
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 17932709 .. 17932921 (+)
RNA-Seq ExpressionHG10019158
SyntenyHG10019158
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCGTCCCTCCGCCATTCTGAGCGTCGTGCTGGTGGCGCTGCTGCTCGTTTGTGTCGCTAATGCACACGAGGGCCACGTGCATCCTCCGTCCTCCGAGCCCCATGCCGCCCCTCCGCCGGGACACAACGCGGCCGTCATGAACAGCCTTTCATACTTTTGGTCTATGGCAATGGCCATGGTGGCTACGTCTTGGATGCTGTTTTAA

mRNA sequence

ATGGCAGCTCGTCCCTCCGCCATTCTGAGCGTCGTGCTGGTGGCGCTGCTGCTCGTTTGTGTCGCTAATGCACACGAGGGCCACGTGCATCCTCCGTCCTCCGAGCCCCATGCCGCCCCTCCGCCGGGACACAACGCGGCCGTCATGAACAGCCTTTCATACTTTTGGTCTATGGCAATGGCCATGGTGGCTACGTCTTGGATGCTGTTTTAA

Coding sequence (CDS)

ATGGCAGCTCGTCCCTCCGCCATTCTGAGCGTCGTGCTGGTGGCGCTGCTGCTCGTTTGTGTCGCTAATGCACACGAGGGCCACGTGCATCCTCCGTCCTCCGAGCCCCATGCCGCCCCTCCGCCGGGACACAACGCGGCCGTCATGAACAGCCTTTCATACTTTTGGTCTATGGCAATGGCCATGGTGGCTACGTCTTGGATGCTGTTTTAA

Protein sequence

MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAMAMVATSWMLF
Homology
BLAST of HG10019158 vs. NCBI nr
Match: KGN53725.1 (hypothetical protein Csa_014716 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
          MAA PSA+LSVVLVALLL+CVANAHEGH HPPSSE H APPP H+AA++NSLSYFWSMAM
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVATSWML 70
          AMVA SW++
Sbjct: 61 AMVAASWII 69

BLAST of HG10019158 vs. NCBI nr
Match: KAG6576850.1 (hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAA-VMNSLSYFWSMA 60
          MAARPSA+L+VVLVALLLV VA AHEGHVHPPSS+PH APPP HNAA  +NSLSYFWSMA
Sbjct: 1  MAARPSAVLTVVLVALLLVSVAYAHEGHVHPPSSDPHVAPPPEHNAATAVNSLSYFWSMA 60

Query: 61 MAMVATSWMLF 71
          +AMVA+SWMLF
Sbjct: 61 IAMVASSWMLF 71

BLAST of HG10019158 vs. NCBI nr
Match: KAG7030901.1 (Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-21
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
           MAARPSA+LS VL  LLLV VAN HEGHVHPPSSEP A+PPPG NAA+MNS SY WSM M
Sbjct: 689 MAARPSAVLSFVLAVLLLVYVANGHEGHVHPPSSEPTASPPPGVNAAIMNSFSYSWSMVM 748

Query: 61  AMVATSWMLF 71
           AMVATSWMLF
Sbjct: 749 AMVATSWMLF 758

BLAST of HG10019158 vs. NCBI nr
Match: TYK29918.1 (hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-20
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
          MAARPSA+LSV+LV LLL+ V NAHEGH HPPSSE H APPP HNAA+MNSLSYFWSMAM
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAIMNSLSYFWSMAM 60

Query: 61 AMVATSWMLF 71
          AMVA S  +F
Sbjct: 61 AMVAASSTIF 70

BLAST of HG10019158 vs. NCBI nr
Match: KAA0061157.1 (hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
          MAARPSA+LSV+LV LLL+ V NAHEGH HPPSSE H APPP HNAA++NSLSYFWSMAM
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAIVNSLSYFWSMAM 60

Query: 61 AMVATSWMLF 71
          AMVA S  +F
Sbjct: 61 AMVAASSTIF 70

BLAST of HG10019158 vs. ExPASy TrEMBL
Match: A0A0A0KVS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
          MAA PSA+LSVVLVALLL+CVANAHEGH HPPSSE H APPP H+AA++NSLSYFWSMAM
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVATSWML 70
          AMVA SW++
Sbjct: 61 AMVAASWII 69

BLAST of HG10019158 vs. ExPASy TrEMBL
Match: A0A5D3E2A2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00020 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
          MAARPSA+LSV+LV LLL+ V NAHEGH HPPSSE H APPP HNAA+MNSLSYFWSMAM
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAIMNSLSYFWSMAM 60

Query: 61 AMVATSWMLF 71
          AMVA S  +F
Sbjct: 61 AMVAASSTIF 70

BLAST of HG10019158 vs. ExPASy TrEMBL
Match: A0A5A7V2Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00260 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MAARPSAILSVVLVALLLVCVANAHEGHVHPPSSEPHAAPPPGHNAAVMNSLSYFWSMAM 60
          MAARPSA+LSV+LV LLL+ V NAHEGH HPPSSE H APPP HNAA++NSLSYFWSMAM
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAIVNSLSYFWSMAM 60

Query: 61 AMVATSWMLF 71
          AMVA S  +F
Sbjct: 61 AMVAASSTIF 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53725.16.8e-2281.16hypothetical protein Csa_014716 [Cucumis sativus][more]
KAG6576850.12.0e-2183.10hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030901.17.5e-2181.43Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita ar... [more]
TYK29918.13.7e-2078.57hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa][more]
KAA0061157.11.1e-1977.14hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVS33.3e-2281.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1[more]
A0A5D3E2A21.8e-2078.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2Q55.3e-2077.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019158.1HG10019158.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane