HG10018364 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018364
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUbiquinol-cytochrome c reductase complex 6.7 kDa
LocationChr04: 3487521 .. 3487772 (-)
RNA-Seq ExpressionHG10018364
SyntenyHG10018364
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCAAAGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTTCCTAAACTCATCGATCTATACTATTATTTCTGGTTTTCGGGGATTTATACAGTGAATCTTTTGACTCTCCATGTTAGATTAAAAGATGCGTCGATCTTCTTGAAAGTTGATTCTTGA

mRNA sequence

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCAAAGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTTCCTAAACTCATCGATCTATACTATTATTTCTGGTTTTCGGGGATTTATACAGTGAATCTTTTGACTCTCCATGTTAGATTAAAAGATGCGTCGATCTTCTTGAAAGTTGATTCTTGA

Coding sequence (CDS)

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCAAAGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTTCCTAAACTCATCGATCTATACTATTATTTCTGGTTTTCGGGGATTTATACAGTGAATCTTTTGACTCTCCATGTTAGATTAAAAGATGCGTCGATCTTCTTGAAAGTTGATTCTTGA

Protein sequence

MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPKLIDLYYYFWFSGIYTVNLLTLHVRLKDASIFLKVDS
Homology
BLAST of HG10018364 vs. NCBI nr
Match: KGN45840.1 (hypothetical protein Csa_005761 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPKLIDL 52
          MAGES+LFKFLSPGRRFQSTDI+AAAGWGVAAATTALWV+QVF+F K  DL
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDL 51

BLAST of HG10018364 vs. NCBI nr
Match: KAG6578485.1 (hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 1   MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
           MAGESTLFKFLSPGRRFQSTDI+AAAGWGVAAATTALWVVQ F + K
Sbjct: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIK 163

BLAST of HG10018364 vs. NCBI nr
Match: KAG7016049.1 (hypothetical protein SDJN02_21153 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQ 42
          MAGESTLFKFLSPGRRFQSTDI+AAAGWGVAAATTALWVVQ
Sbjct: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQ 41

BLAST of HG10018364 vs. NCBI nr
Match: KAA0051979.1 (Ubiquinol-cytochrome c reductase complex 6.7 kDa [Cucumis melo var. makuwa] >TYK04578.1 Ubiquinol-cytochrome c reductase complex 6.7 kDa [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 47/83 (56.63%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPKLIDLYYYFWFSGI 60
          MAGES+LFKFLSPGRRFQSTDI+AAAGWGVAAATTALWV+Q                   
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQ------------------- 51

Query: 61 YTVNLLTLHVRLKDASIFLKVDS 84
                       DASIFLK+DS
Sbjct: 61 -------------DASIFLKIDS 51

BLAST of HG10018364 vs. NCBI nr
Match: KAF9661439.1 (hypothetical protein SADUNF_Sadunf19G0068800 [Salix dunnii])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 1   MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
           MAG++ +FKFLSP  R QSTDI+ AA WGVAA TTALWVVQ+ +FP+
Sbjct: 55  MAGKTAMFKFLSPRLRLQSTDIQTAACWGVAAGTTALWVVQLSAFPQ 101

BLAST of HG10018364 vs. ExPASy Swiss-Prot
Match: P48505 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-08
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 2  AGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSF 46
          A  + LFKFL P  R QSTDI+AAAGWGVAA T ALWV+Q + F
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDF 49

BLAST of HG10018364 vs. ExPASy Swiss-Prot
Match: Q94K78 (Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRY PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-05
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
          MAG S L   + P  + Q+ DI+AAAGWG+AAA  A+WVVQ F + K
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIK 45

BLAST of HG10018364 vs. ExPASy TrEMBL
Match: A0A0A0K7V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.3e-16
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPKLIDL 52
          MAGES+LFKFLSPGRRFQSTDI+AAAGWGVAAATTALWV+QVF+F K  DL
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDL 51

BLAST of HG10018364 vs. ExPASy TrEMBL
Match: A0A5D3BZX3 (Ubiquinol-cytochrome c reductase complex 6.7 kDa OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002150 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.4e-13
Identity = 47/83 (56.63%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPKLIDLYYYFWFSGI 60
          MAGES+LFKFLSPGRRFQSTDI+AAAGWGVAAATTALWV+Q                   
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQ------------------- 51

Query: 61 YTVNLLTLHVRLKDASIFLKVDS 84
                       DASIFLK+DS
Sbjct: 61 -------------DASIFLKIDS 51

BLAST of HG10018364 vs. ExPASy TrEMBL
Match: A9PAG4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-08
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
          MAGE+ +FKFLSP  R QSTDI+ AA WGVAA TTALW+VQ F + K
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIK 47

BLAST of HG10018364 vs. ExPASy TrEMBL
Match: A0A2P2J2E2 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
          MAGE+ L KFLSP  R QSTDI+AAA WGVAA TTALW++Q F + K
Sbjct: 1  MAGEAALSKFLSPRLRPQSTDIQAAAFWGVAATTTALWLIQPFDWIK 47

BLAST of HG10018364 vs. ExPASy TrEMBL
Match: A0A0D2SX41 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-07
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
          MAGE  LFKFL PG+R Q  D++AAA WGVAA T ALW++Q F + K
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLK 47

BLAST of HG10018364 vs. TAIR 10
Match: AT2G40765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 1  MAGESTLFKFLSPGRRFQSTDIKAAAGWGVAAATTALWVVQVFSFPK 48
          MAG S L   + P  + Q+ DI+AAAGWG+AAA  A+WVVQ F + K
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIK 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45840.11.9e-1586.27hypothetical protein Csa_005761 [Cucumis sativus][more]
KAG6578485.11.4e-1389.36hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7016049.19.0e-1397.56hypothetical protein SDJN02_21153 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0051979.11.5e-1256.63Ubiquinol-cytochrome c reductase complex 6.7 kDa [Cucumis melo var. makuwa] >TYK... [more]
KAF9661439.12.3e-0868.09hypothetical protein SADUNF_Sadunf19G0068800 [Salix dunnii][more]
Match NameE-valueIdentityDescription
P485056.9e-0865.91Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX... [more]
Q94K782.5e-0553.19Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
A0A0A0K7V09.3e-1686.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014600 PE=4 SV=1[more]
A0A5D3BZX37.4e-1356.63Ubiquinol-cytochrome c reductase complex 6.7 kDa OS=Cucumis melo var. makuwa OX=... [more]
A9PAG45.5e-0868.09Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 ... [more]
A0A2P2J2E23.6e-0768.09Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A0D2SX414.6e-0761.70Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT2G40765.11.7e-0653.19unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018364.1HG10018364.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane