HG10017586 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017586
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	sigma factor binding protein 2, chloroplastic
Location	Chr03: 16313229 .. 16313726 (+)
RNA-Seq Expression	HG10017586
Synteny	HG10017586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

Homology

[Close]

BLAST of HG10017586 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.4e-67
Identity = 141/165 (85.45%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQEL 60
           M+AGA TGNNHRILDAV+R KPTKKTKQPNKKKPIKVVYISNPMKVQTSAS+FMALVQEL
Sbjct: 1   MNAGADTGNNHRILDAVNRRKPTKKTKQPNKKKPIKVVYISNPMKVQTSASKFMALVQEL 60

Query: 61  TGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELP 120
           TG+DADFPDPSKF  SAV GGAASSDLLHNTASG   DD+ GASNL+MN+NN SLAVELP
Sbjct: 61  TGRDADFPDPSKFSPSAVCGGAASSDLLHNTASG-GGDDEHGASNLIMNNNNCSLAVELP 120

Query: 121 EEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
            +DD LGSFY+DF+DLIFPPPVIGNFSGLLPAAA  AVVYESYAR
Sbjct: 121 VDDDILGSFYDDFDDLIFPPPVIGNFSGLLPAAA--AVVYESYAR 162

[Close]

BLAST of HG10017586 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

[Close]

BLAST of HG10017586 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 164

[Close]

BLAST of HG10017586 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 6.9e-57
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSK P SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPVAAVVYESNAR 164

[Close]

BLAST of HG10017586 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-55
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of HG10017586 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of HG10017586 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

[Close]

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 164

[Close]

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

[Close]

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSK P SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPVAAVVYESNAR 164

[Close]

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.8e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 116/164 (70.73%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 3   AGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           AG GTGN+HR+LD VHR KPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTG 64

Query: 63  QDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEE 122
           QDADFPDPS FP +AV   AA  D +HNT +  +          +MN+NNPSL VE+P E
Sbjct: 65  QDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN----------LMNNNNPSLTVEIPME 124

Query: 123 DD-FLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           DD FLGSFY+D +DLIFPPPVIGN+  LLPAAA TAV+YESYAR
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of HG10017586 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-09
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of HG10017586 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of HG10017586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882812.1	7.4e-67	85.45	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]
XP_008455708.1	1.8e-57	76.65	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
KAA0025974.1	1.8e-57	76.65	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK04210.1	6.9e-57	76.05	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
KAE8649682.1	1.0e-55	74.85	hypothetical protein Csa_012221 [Cucumis sativus]	[more]

BLAST of HG10017586 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	4.7e-08	47.78	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	1.8e-07	48.57	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of HG10017586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJV9	8.8e-58	76.65	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C276	8.8e-58	76.65	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	3.3e-57	76.05	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L3J8	4.8e-56	74.85	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	3.8e-53	70.73	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of HG10017586 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	3.4e-09	47.78	sigma factor binding protein 1	[more]
AT2G41180.1	1.3e-08	48.57	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 1.0E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..111
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..154
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017586.1	HG10017586.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity