HG10017586 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017586
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionsigma factor binding protein 2, chloroplastic
LocationChr03: 16313229 .. 16313726 (+)
RNA-Seq ExpressionHG10017586
SyntenyHG10017586
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
Homology
BLAST of HG10017586 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.4e-67
Identity = 141/165 (85.45%), Postives = 151/165 (91.52%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQEL 60
           M+AGA TGNNHRILDAV+R KPTKKTKQPNKKKPIKVVYISNPMKVQTSAS+FMALVQEL
Sbjct: 1   MNAGADTGNNHRILDAVNRRKPTKKTKQPNKKKPIKVVYISNPMKVQTSASKFMALVQEL 60

Query: 61  TGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELP 120
           TG+DADFPDPSKF  SAV GGAASSDLLHNTASG   DD+ GASNL+MN+NN SLAVELP
Sbjct: 61  TGRDADFPDPSKFSPSAVCGGAASSDLLHNTASG-GGDDEHGASNLIMNNNNCSLAVELP 120

Query: 121 EEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
            +DD LGSFY+DF+DLIFPPPVIGNFSGLLPAAA  AVVYESYAR
Sbjct: 121 VDDDILGSFYDDFDDLIFPPPVIGNFSGLLPAAA--AVVYESYAR 162

BLAST of HG10017586 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

BLAST of HG10017586 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 164

BLAST of HG10017586 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 6.9e-57
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSK P SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPVAAVVYESNAR 164

BLAST of HG10017586 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-55
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

BLAST of HG10017586 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

BLAST of HG10017586 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 164

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSK P SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPVAAVVYESNAR 164

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.8e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

BLAST of HG10017586 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 116/164 (70.73%), Postives = 130/164 (79.27%), Query Frame = 0

Query: 3   AGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           AG GTGN+HR+LD VHR KPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTG 64

Query: 63  QDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEE 122
           QDADFPDPS FP +AV   AA  D +HNT +  +          +MN+NNPSL VE+P E
Sbjct: 65  QDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN----------LMNNNNPSLTVEIPME 124

Query: 123 DD-FLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           DD FLGSFY+D +DLIFPPPVIGN+  LLPAAA TAV+YESYAR
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

BLAST of HG10017586 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-09
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

BLAST of HG10017586 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882812.17.4e-6785.45sigma factor binding protein 2, chloroplastic-like [Benincasa hispida][more]
XP_008455708.11.8e-5776.65PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo][more]
KAA0025974.11.8e-5776.65sigma factor binding protein 2 [Cucumis melo var. makuwa][more]
TYK04210.16.9e-5776.05sigma factor binding protein 2 [Cucumis melo var. makuwa][more]
KAE8649682.11.0e-5574.85hypothetical protein Csa_012221 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9LDH14.7e-0847.78Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O806691.8e-0748.57Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
A0A5A7SJV98.8e-5876.65Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3C2768.8e-5876.65sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5D3BYM23.3e-5776.05Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0L3J84.8e-5674.85VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=... [more]
A0A6J1EY873.8e-5370.73sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
Match NameE-valueIdentityDescription
AT3G56710.13.4e-0947.78sigma factor binding protein 1 [more]
AT2G41180.11.3e-0848.57VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 40..65
e-value: 1.0E-12
score: 47.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..111
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 16..154
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 16..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017586.1HG10017586.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of DNA-binding transcription factor activity