HG10017388 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017388
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L14
Location	Chr03: 13935791 .. 13936656 (-)
RNA-Seq Expression	HG10017388
Synteny	HG10017388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGGTCTTTGTTTGAGATGAAAAAAAAAACAATTGCAGATTTCTTTTTTTTTTGGAAAAACAATATTTCTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAA

mRNA sequence

ATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAA

Coding sequence (CDS)

ATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAA

Protein sequence

MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL

Homology

[Close]

BLAST of HG10017388 vs. NCBI nr
Match: KAF3449786.1 (hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 185/195 (94.87%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKG++YRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+
Sbjct: 1   MKGMAYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPE+WVAVVKP DNSGARELMCIRIIGASNRRYA IGDVIVAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEFWVAVVKPADNSGARELMCIRIIGASNRRYAQIGDVIVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR 180
           PNTPLERSEVIRAVIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR 180

Query: 181 QLNFTKIISLAPEVL 195
           QLNFTKI+SLAPEVL
Sbjct: 181 QLNFTKIVSLAPEVL 195

[Close]

BLAST of HG10017388 vs. NCBI nr
Match: XP_022728609.1 (uncharacterized protein LOC111284164 [Durio zibethinus] >XP_022732752.1 uncharacterized protein LOC111286845 [Durio zibethinus] >XP_022735748.1 uncharacterized protein LOC111289142 [Durio zibethinus] >XP_022735765.1 uncharacterized protein LOC111289179 [Durio zibethinus])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 183/194 (94.33%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 238 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 297

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           R TETRMGSGKGSPEYWVAVVKPDNSGARELMCIR+IGASNRRYAHIGDVIVAVIKKAVP
Sbjct: 298 RSTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRVIGASNRRYAHIGDVIVAVIKKAVP 357

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180
             PLERSEVIRAVIVRTCKELKR+NGMIIRYDDNAAVVIDQ+GNPKGTRIFGAIA ELRQ
Sbjct: 358 KAPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQKGNPKGTRIFGAIAGELRQ 417

Query: 181 LNFTKIISLAPEVL 195
           LNFTKI+SLAPEVL
Sbjct: 418 LNFTKIVSLAPEVL 431

[Close]

BLAST of HG10017388 vs. NCBI nr
Match: XP_034910603.1 (50S ribosomal protein L14, chloroplastic [Populus alba])

HSP 1 Score: 372.5 bits (955), Expect = 2.3e-99
Identity = 183/194 (94.33%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           RP+ETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIG SNRRYAHIGDVI+AVIK+AVP
Sbjct: 61  RPSETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGTSNRRYAHIGDVIIAVIKEAVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180
           N+PLERSEVIRAVIVRT KELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ
Sbjct: 121 NSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180

Query: 181 LNFTKIISLAPEVL 195
           LNFTKI+SLAPEVL
Sbjct: 181 LNFTKIVSLAPEVL 194

[Close]

BLAST of HG10017388 vs. NCBI nr
Match: OIW20051.1 (hypothetical protein TanjilG_32007 [Lupinus angustifolius])

HSP 1 Score: 365.2 bits (936), Expect = 3.6e-97
Identity = 179/195 (91.79%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKP+T+
Sbjct: 1   MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPITV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPEYWVAVVKP DNSGARELMCIRIIGASNRRYA+IGD++VAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR 180
           PNTPLERSEVIRAVIVRTCKELKR NGMII Y+DNAAVVIDQEGNPKGTRIFGAIARELR
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRSNGMIIYYNDNAAVVIDQEGNPKGTRIFGAIARELR 180

Query: 181 QLNFTKIISLAPEVL 195
           QLNFTKI+SLAPEVL
Sbjct: 181 QLNFTKIVSLAPEVL 195

[Close]

BLAST of HG10017388 vs. NCBI nr
Match: KAD7117008.1 (hypothetical protein E3N88_04276 [Mikania micrantha])

HSP 1 Score: 364.8 bits (935), Expect = 4.7e-97
Identity = 180/199 (90.45%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYELDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGA 180
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+FGA
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGA 180

Query: 181 IARELRQLNFTKIISLAPE 193
           IARELRQ NFTKI+SLAPE
Sbjct: 181 IARELRQFNFTKIVSLAPE 199

[Close]

BLAST of HG10017388 vs. ExPASy Swiss-Prot
Match: Q8WKP4 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 195
           ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 72  ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of HG10017388 vs. ExPASy Swiss-Prot
Match: Q49KW2 (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.7e-54
Identity = 105/111 (94.59%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGD+IVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEALPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 195
           +NGMIIRYDDNAAVVIDQEGNPKGTR+FGAIARELRQLNFTKI+SLAPEVL
Sbjct: 72  DNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of HG10017388 vs. ExPASy Swiss-Prot
Match: B1A971 (50S ribosomal protein L14, chloroplastic OS=Carica papaya OX=3649 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-53
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 195
            NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI RELRQLNFTKI+SLAPEVL
Sbjct: 72  NNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of HG10017388 vs. ExPASy Swiss-Prot
Match: A0A372 (50S ribosomal protein L14, chloroplastic OS=Coffea arabica OX=13443 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-53
Identity = 106/111 (95.50%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPN PLERSEV+RAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 195
           +NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKI+SLAPEVL
Sbjct: 72  DNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of HG10017388 vs. ExPASy Swiss-Prot
Match: Q09ME1 (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-53
Identity = 105/111 (94.59%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRAVIVRTCKEL+R
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 195
           +NGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKI+SLAPEVL
Sbjct: 72  DNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of HG10017388 vs. ExPASy TrEMBL
Match: A0A6P5XJN5 (30S ribosomal protein S3, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111284164 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.4e-100
Identity = 183/194 (94.33%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 238 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 297

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           R TETRMGSGKGSPEYWVAVVKPDNSGARELMCIR+IGASNRRYAHIGDVIVAVIKKAVP
Sbjct: 298 RSTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRVIGASNRRYAHIGDVIVAVIKKAVP 357

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180
             PLERSEVIRAVIVRTCKELKR+NGMIIRYDDNAAVVIDQ+GNPKGTRIFGAIA ELRQ
Sbjct: 358 KAPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQKGNPKGTRIFGAIAGELRQ 417

Query: 181 LNFTKIISLAPEVL 195
           LNFTKI+SLAPEVL
Sbjct: 418 LNFTKIVSLAPEVL 431

[Close]

BLAST of HG10017388 vs. ExPASy TrEMBL
Match: A0A394DIF1 (Ribosomal_L16 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_32007 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 179/195 (91.79%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKP+T+
Sbjct: 1   MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPITV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPEYWVAVVKP DNSGARELMCIRIIGASNRRYA+IGD++VAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR 180
           PNTPLERSEVIRAVIVRTCKELKR NGMII Y+DNAAVVIDQEGNPKGTRIFGAIARELR
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRSNGMIIYYNDNAAVVIDQEGNPKGTRIFGAIARELR 180

Query: 181 QLNFTKIISLAPEVL 195
           QLNFTKI+SLAPEVL
Sbjct: 181 QLNFTKIVSLAPEVL 195

[Close]

BLAST of HG10017388 vs. ExPASy TrEMBL
Match: A0A5N6PW49 (Ribosomal_L16 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_04276 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 180/199 (90.45%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYELDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGA 180
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+FGA
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGA 180

Query: 181 IARELRQLNFTKIISLAPE 193
           IARELRQ NFTKI+SLAPE
Sbjct: 181 IARELRQFNFTKIVSLAPE 199

[Close]

BLAST of HG10017388 vs. ExPASy TrEMBL
Match: A0A385G255 (Ribosomal protein L14 OS=Ammopiptanthus mongolicus OX=126911 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 178/195 (91.28%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKP+T+
Sbjct: 1   MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPITI 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPEYWVAVVKP DNSGARELMCIRIIGASNRRYA+IGD++VAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR 180
           PNTPLERSEVIRAVIVRTCKELKR NGMII Y+DNAAVVIDQEGNPKGTRIFGAIARELR
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRSNGMIIHYNDNAAVVIDQEGNPKGTRIFGAIARELR 180

Query: 181 QLNFTKIISLAPEVL 195
           Q NFTKI+SLAPEVL
Sbjct: 181 QYNFTKIVSLAPEVL 195

[Close]

BLAST of HG10017388 vs. ExPASy TrEMBL
Match: A0A067KET2 (Ribosomal_L16 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_15169 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.9e-97
Identity = 176/194 (90.72%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKG ++R NRI FGRYA+QALEP+WITSRQIEAGRR MTRNARRGGKIW+RIFPDKP+TL
Sbjct: 1   MKGKAFRANRISFGRYALQALEPSWITSRQIEAGRRTMTRNARRGGKIWIRIFPDKPITL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRI+G SNRRYAHIGDVIVAVIK+A P
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIMGTSNRRYAHIGDVIVAVIKEATP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180
           N+PLERSEVIRAVIVRTCKELKR+NG+IIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ
Sbjct: 121 NSPLERSEVIRAVIVRTCKELKRDNGIIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180

Query: 181 LNFTKIISLAPEVL 195
           LNFTKI+SLAPEVL
Sbjct: 181 LNFTKIVSLAPEVL 194

[Close]

BLAST of HG10017388 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-54
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 195
            NG IIRYDDNAAVVIDQEGNPKGTR+FGAI RELRQLNFTKI+SLAPEVL
Sbjct: 72  NNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of HG10017388 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-41
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          +KGIS RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17 LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RP ETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPAETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of HG10017388 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-26
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2   KGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 61
           KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+R
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVR 906

Query: 62  PTETRMGSGKGSPEYWVAVVKP 84
           P ETRMG GKG+P +WVAVVKP
Sbjct: 907 PPETRMGRGKGAPAFWVAVVKP 926

[Close]

BLAST of HG10017388 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +  R
Sbjct: 58  DNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 117

Query: 144 ENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGAIARELRQLNFTKIISLAPEV 194
            +G  +R+DDNA V++D        +  P GTR+FG +  ELR+    KI++LA  V
Sbjct: 118 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHV 172

[Close]

BLAST of HG10017388 vs. TAIR 10
Match: AT5G46160.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +  R
Sbjct: 57  DNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 116

Query: 144 ENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGAIARELRQLNFTKIISLAPEV 194
            +G  +R+DDNA V++D        +  P GTR+FG +  ELR+    KI++LA  V
Sbjct: 117 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHV 171

The following BLAST results are available for this feature:

BLAST of HG10017388 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3449786.1	1.0e-99	94.87	hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis]	[more]
XP_022728609.1	1.3e-99	94.33	uncharacterized protein LOC111284164 [Durio zibethinus] >XP_022732752.1 uncharac...	[more]
XP_034910603.1	2.3e-99	94.33	50S ribosomal protein L14, chloroplastic [Populus alba]	[more]
OIW20051.1	3.6e-97	91.79	hypothetical protein TanjilG_32007 [Lupinus angustifolius]	[more]
KAD7117008.1	4.7e-97	90.45	hypothetical protein E3N88_04276 [Mikania micrantha]	[more]

BLAST of HG10017388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WKP4	2.1e-55	100.00	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=...	[more]
Q49KW2	6.7e-54	94.59	50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
B1A971	1.1e-53	96.40	50S ribosomal protein L14, chloroplastic OS=Carica papaya OX=3649 GN=rpl14 PE=3 ...	[more]
A0A372	1.1e-53	95.50	50S ribosomal protein L14, chloroplastic OS=Coffea arabica OX=13443 GN=rpl14 PE=...	[more]
Q09ME1	1.9e-53	94.59	50S ribosomal protein L14, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl14 PE=...	[more]

BLAST of HG10017388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5XJN5	6.4e-100	94.33	30S ribosomal protein S3, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC11128...	[more]
A0A394DIF1	1.7e-97	91.79	Ribosomal_L16 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Tanj...	[more]
A0A5N6PW49	2.3e-97	90.45	Ribosomal_L16 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_...	[more]
A0A385G255	3.0e-97	91.28	Ribosomal protein L14 OS=Ammopiptanthus mongolicus OX=126911 GN=rpl14 PE=3 SV=1	[more]
A0A067KET2	3.9e-97	90.72	Ribosomal_L16 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_151...	[more]

BLAST of HG10017388 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00780.1	6.9e-54	93.69	ribosomal protein L14	[more]
ATCG00790.1	2.3e-41	91.57	ribosomal protein L16	[more]
AT2G28830.1	1.2e-26	71.95	PLANT U-BOX 12	[more]
AT5G46160.1	1.0e-17	38.46	Ribosomal protein L14p/L23e family protein	[more]
AT5G46160.2	1.0e-17	38.46	Ribosomal protein L14p/L23e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 8..20 score: 47.85 coord: 26..37 score: 71.5 coord: 42..71 score: 67.87 coord: 72..101 score: 28.53
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 1..83 e-value: 4.4E-38 score: 128.2
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 80..194 e-value: 1.4E-59 score: 213.9
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 84..194 e-value: 1.0E-43 score: 148.2
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 83..194
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 60..194 score: 21.51996
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 84..194 e-value: 9.4E-46 score: 152.6
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..82 e-value: 4.1E-39 score: 136.3
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..84
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 83..194 e-value: 8.4E-47 score: 160.4
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 83..194
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..84 e-value: 1.9E-30 score: 105.6
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 7..83 e-value: 1.41045E-36 score: 121.445
None	No IPR available	PANTHER	PTHR11761:SF37	RIBOSOMAL PROTEIN L14B/L23E-RELATED	coord: 83..194
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 43..54
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 66..77
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 132..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017388.1	HG10017388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome