HG10017188 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACAACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTAG ATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACAACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTAG ATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACAACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTAG MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP Homology
BLAST of HG10017188 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo]) HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. NCBI nr
Match: YP_009431632.1 (RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta'' subunit [Citrullus rehmii]) HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. NCBI nr
Match: YP_009420784.1 (RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase beta'' subunit [Citrullus colocynthis]) HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. NCBI nr
Match: YP_009431547.1 (RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris] >ASY96148.1 RNA polymerase beta'' subunit [Citrullus amarus]) HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.9e-30 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy Swiss-Prot
Match: Q06H07 (DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis OX=224735 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.6e-29 Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy Swiss-Prot
Match: Q9THV5 (DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba OX=3728 GN=rpoC2 PE=1 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.6e-29 Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy Swiss-Prot
Match: A8SE78 (DNA-directed RNA polymerase subunit beta'' OS=Ceratophyllum demersum OX=4428 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 2.7e-29 Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy Swiss-Prot
Match: Q09G56 (DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis OX=4403 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 2.7e-29 Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy TrEMBL
Match: A0A1X9Q1J9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy TrEMBL
Match: A0A249RZW9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy TrEMBL
Match: A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. ExPASy TrEMBL
Match: A0A286NFX2 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of HG10017188 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein ) HSP 1 Score: 122.9 bits (307), Expect = 1.0e-28 Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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