HG10015821 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015821
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
LocationChr03: 570282 .. 571136 (-)
RNA-Seq ExpressionHG10015821
SyntenyHG10015821
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCCAAGGGTAAGAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGGCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCTGTTAATGCTGCGGCTATGGCTGGGCCTGGTATGGGCCGTGCCGCTGGTAGGGGTATCCCGACCGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTATCCGCTCCGCCGATGACATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAAGCTCCACCTCAAGTTGGGAGAGGCATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCAGGTTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCACCACCGCCACCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTATGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAACCAGCAGCAAAATCAACAACAATAG

mRNA sequence

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCCAAGGGTAAGAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGGCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCTGTTAATGCTGCGGCTATGGCTGGGCCTGGTATGGGCCGTGCCGCTGGTAGGGGTATCCCGACCGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTATCCGCTCCGCCGATGACATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAAGCTCCACCTCAAGTTGGGAGAGGCATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCAGGTTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCACCACCGCCACCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTATGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAACCAGCAGCAAAATCAACAACAATAG

Coding sequence (CDS)

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCCAAGGGTAAGAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGGCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCTGTTAATGCTGCGGCTATGGCTGGGCCTGGTATGGGCCGTGCCGCTGGTAGGGGTATCCCGACCGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTATCCGCTCCGCCGATGACATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAAGCTCCACCTCAAGTTGGGAGAGGCATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCAGGTTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCACCACCGCCACCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTATGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAACCAGCAGCAAAATCAACAACAATAG

Protein sequence

MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Homology
[Close]
BLAST of HG10015821 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida])

HSP 1 Score: 522.7 bits (1345), Expect = 2.0e-144
Identity = 281/284 (98.94%), Postives = 282/284 (99.30%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP VGRGMPPPVPPPQFSAARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 519.6 bits (1337), Expect = 1.7e-143
Identity = 279/284 (98.24%), Postives = 281/284 (98.94%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP +GRGMPPPVPPPQFSAARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. NCBI nr
Match: XP_004134546.1 (small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_003303 [Cucumis sativus])

HSP 1 Score: 517.7 bits (1332), Expect = 6.4e-143
Identity = 277/284 (97.54%), Postives = 280/284 (98.59%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP +GRGMPPPVPPPQFS ARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa])

HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142
Identity = 277/282 (98.23%), Postives = 279/282 (98.94%), Query Frame = 0 

Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 242
           P +GRGMPPPVPPPQFSAARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]
BLAST of HG10015821 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142
Identity = 278/284 (97.89%), Postives = 280/284 (98.59%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP VGRGMPPP PPPQFSAARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.4e-44
Identity = 132/273 (48.35%), Postives = 161/273 (58.97%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPG+GRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----G 180

Query: 181 QAPPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPR 240
             PP +GRG PPP                     PP   + PMG PPTG        PP 
Sbjct: 181 GPPPPMGRGRPPP-----------------GMMAPPPGMRPPMG-PPTGM-------PPG 238

Query: 241 PGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP 273
            G P   P PGM PPP G   + GPP PGM PP
Sbjct: 241 RGAPMGIPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]
BLAST of HG10015821 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.2e-44
Identity = 134/259 (51.74%), Postives = 162/259 (62.55%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPQVGRGMPPP--VPPPQFSAARPGGAPPQ--PFQVPPQFAQRPMGPPPTGQVMRGPP 240
             PP +GRG PPP  + PP      PG  PP   P  +PP     PMG PP G  MR   
Sbjct: 181 GPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPG-RGTPMGMPPPG--MR--- 238

Query: 241 PPPRPGMPAPPPRPGMPPP 255
            PP PGM  PPP PG+ PP
Sbjct: 241 -PPPPGMRGPPP-PGLRPP 238

[Close]
BLAST of HG10015821 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-43
Identity = 133/275 (48.36%), Postives = 160/275 (58.18%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPP--P 240
             PP +GRG PPP                             MGPPP  +   GPP   P
Sbjct: 181 GPPPPMGRGAPPP---------------------------GMMGPPPGMRPPMGPPMGIP 238

Query: 241 PRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP 273
           P  G P   P PGM PPP G   + GPP PGM PP
Sbjct: 241 PGRGTPMGMPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]
BLAST of HG10015821 vs. ExPASy Swiss-Prot
Match: Q58DW4 (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 132/275 (48.00%), Postives = 159/275 (57.82%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+      
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----A 180

Query: 181 QAPPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPP--P 240
             PP +GRG PPP                             MGPPP  +   GPP   P
Sbjct: 181 GPPPPMGRGAPPP---------------------------GMMGPPPGMRPPMGPPMGIP 238

Query: 241 PRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP 273
           P  G P   P PGM PPP G   + GPP PGM PP
Sbjct: 241 PGRGTPMGMPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]
BLAST of HG10015821 vs. ExPASy Swiss-Prot
Match: Q9PV94 (Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.6e-42
Identity = 131/275 (47.64%), Postives = 159/275 (57.82%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRG+P  A
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGA 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP    PG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYTPGR-----G 180

Query: 181 QAPPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPP--PP 240
             PP + RG PPP                             MGPPP  +   GPP   P
Sbjct: 181 GPPPPMSRGAPPP---------------------------GMMGPPPGMRPPMGPPMGMP 238

Query: 241 PRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP 273
           P  G P   P PGM PPP G   + GPP PGM PP
Sbjct: 241 PGRGAPMGMPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]
BLAST of HG10015821 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 8.1e-144
Identity = 279/284 (98.24%), Postives = 281/284 (98.94%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP +GRGMPPPVPPPQFSAARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.1e-143
Identity = 277/284 (97.54%), Postives = 280/284 (98.59%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP +GRGMPPPVPPPQFS ARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.9e-143
Identity = 277/282 (98.23%), Postives = 279/282 (98.94%), Query Frame = 0 

Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 242
           P +GRGMPPPVPPPQFSAARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]
BLAST of HG10015821 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.9e-143
Identity = 278/284 (97.89%), Postives = 280/284 (98.59%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP VGRGMPPP PPPQFSAARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. ExPASy TrEMBL
Match: A0A6J1IQN3 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 GN=LOC111477902 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.2e-142
Identity = 276/284 (97.18%), Postives = 281/284 (98.94%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           +ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPG+GRAAGRGIPTAP
Sbjct: 61  DERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APP VGRGMPPP PPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 285
           GMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]
BLAST of HG10015821 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 214/287 (74.56%), Postives = 227/287 (79.09%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPG+GRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPQVGRGMPPPV----PPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRG 240
            GQ PP +GRG PPP     PP QFS       PP     PPQ+ QRPM PPP G +MRG
Sbjct: 181 GGQGPP-MGRGPPPPYGMRPPPQQFS------GPP-----PPQYGQRPMIPPP-GGMMRG 240

Query: 241 PPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]
BLAST of HG10015821 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 214/287 (74.56%), Postives = 227/287 (79.09%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPG+GRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPQVGRGMPPPV----PPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRG 240
            GQ PP +GRG PPP     PP QFS       PP     PPQ+ QRPM PPP G +MRG
Sbjct: 181 GGQGPP-MGRGPPPPYGMRPPPQQFS------GPP-----PPQYGQRPMIPPP-GGMMRG 240

Query: 241 PPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]
BLAST of HG10015821 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 214/287 (74.56%), Postives = 227/287 (79.09%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPG+GRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPQVGRGMPPPV----PPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRG 240
            GQ PP +GRG PPP     PP QFS       PP     PPQ+ QRPM PPP G +MRG
Sbjct: 181 GGQGPP-MGRGPPPPYGMRPPPQQFS------GPP-----PPQYGQRPMIPPP-GGMMRG 240

Query: 241 PPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]
BLAST of HG10015821 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 214/287 (74.56%), Postives = 227/287 (79.09%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPG+GRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPQVGRGMPPPV----PPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRG 240
            GQ PP +GRG PPP     PP QFS       PP     PPQ+ QRPM PPP G +MRG
Sbjct: 181 GGQGPP-MGRGPPPPYGMRPPPQQFS------GPP-----PPQYGQRPMIPPP-GGMMRG 240

Query: 241 PPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]
BLAST of HG10015821 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 312.8 bits (800), Expect = 2.9e-85
Identity = 199/284 (70.07%), Postives = 215/284 (75.70%), Query Frame = 0 

Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGMGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +  A+AGPG+GRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP    
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMP---- 180

Query: 181 QAPPQVGRGMPPPVPPPQFSAARPGGAPPQPFQVPPQFA--QRPMGPPPTGQVMRGPPPP 240
             PP  G+G PPP           G  PP P   PPQ+   QRPM  PP G +MRGPPPP
Sbjct: 181 PQPPFAGQGGPPP---------PYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPP 240

Query: 241 PRPGMPAPPP-RPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ 280
              GM  PPP RPGMPPP  G  P++ PP PGMPP PPN  NQQ
Sbjct: 241 --HGMQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHNQQ 253

The following BLAST results are available for this feature:
BLAST of HG10015821 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882444.12.0e-14498.94small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >... [more]
XP_008439504.11.7e-14398.24PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis... [more]
XP_004134546.16.4e-14397.54small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN4949... [more]
KAA0052454.11.4e-14298.23small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. ... [more]
XP_022925730.11.4e-14297.89small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ... [more]
BLAST of HG10015821 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9N1Q02.4e-4448.35Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931... [more]
Q9TU679.2e-4451.74Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=... [more]
P146782.7e-4348.36Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=... [more]
Q58DW41.3e-4248.00Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=S... [more]
Q9PV946.6e-4247.64Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 G... [more]
BLAST of HG10015821 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AZK28.1e-14498.24Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0KPA93.1e-14397.54Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN... [more]
A0A5A7UAP66.9e-14398.23Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa O... [more]
A0A6J1EJ146.9e-14397.89Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662... [more]
A0A6J1IQN31.2e-14297.18Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 G... [more]
BLAST of HG10015821 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G20440.11.4e-9274.56small nuclear ribonucleoprotein associated protein B [more]
AT4G20440.21.4e-9274.56small nuclear ribonucleoprotein associated protein B [more]
AT4G20440.31.4e-9274.56small nuclear ribonucleoprotein associated protein B [more]
AT4G20440.41.4e-9274.56small nuclear ribonucleoprotein associated protein B [more]
AT5G44500.12.9e-8570.07Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 7..84
e-value: 4.5E-22
score: 89.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..83
e-value: 7.8E-19
score: 67.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..93
e-value: 6.2E-33
score: 114.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..284
NoneNo IPR availablePANTHERPTHR10701:SF14SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEINcoord: 1..259
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..259
NoneNo IPR availableCDDcd01717Sm_Bcoord: 5..85
e-value: 1.55429E-53
score: 166.958
IPR017131Small ribonucleoprotein associated, SmB/SmNPIRSFPIRSF037187SmB_SmNcoord: 236..275
e-value: 4000.0
score: -14.1
coord: 1..251
e-value: 8.8E-81
score: 268.9
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10015821.1HG10015821.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003723 RNA binding