HG10015749 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015749
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein of unknown function (DUF3531)
LocationChr02: 29671158 .. 29671550 (-)
RNA-Seq ExpressionHG10015749
SyntenyHG10015749
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTGTTCAAGGGTGTCGGATTAGGTTTAACTTTTACGAATGCCAATTTCAGTTGCTATTTTCCTTCTAATACAAGAATCTTCCCCCAATCTGTCACTTCAAACCCTGAATTTCATCCAATTTCTCTTCGTTCTCGTACATTGCTTTTTGAAAATGGCAACGATTCTAAGTTTGACACCAAGAGCACTTCTACACCGACTACGACTGATGCTAAGAGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTAAAGCTTCGTGAAGAGAAGCGCAAACGAGAACATGATCGTCTCCACAATTACCCTGCCTGGGCGAAGTCTCTCTCTCTCTGTTCTTTCTGTATGATTGTGTGTTTCGTTTTTCTTTTTTTCACTGTGTTTGATTGCTAA

mRNA sequence

ATGTCCGTGTTCAAGGGTGTCGGATTAGGTTTAACTTTTACGAATGCCAATTTCAGTTGCTATTTTCCTTCTAATACAAGAATCTTCCCCCAATCTGTCACTTCAAACCCTGAATTTCATCCAATTTCTCTTCGTTCTCGTACATTGCTTTTTGAAAATGGCAACGATTCTAAGTTTGACACCAAGAGCACTTCTACACCGACTACGACTGATGCTAAGAGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTAAAGCTTCGTGAAGAGAAGCGCAAACGAGAACATGATCGTCTCCACAATTACCCTGCCTGGGCGAAGTCTCTCTCTCTCTGTTCTTTCTGTATGATTGTGTGTTTCGTTTTTCTTTTTTTCACTGTGTTTGATTGCTAA

Coding sequence (CDS)

ATGTCCGTGTTCAAGGGTGTCGGATTAGGTTTAACTTTTACGAATGCCAATTTCAGTTGCTATTTTCCTTCTAATACAAGAATCTTCCCCCAATCTGTCACTTCAAACCCTGAATTTCATCCAATTTCTCTTCGTTCTCGTACATTGCTTTTTGAAAATGGCAACGATTCTAAGTTTGACACCAAGAGCACTTCTACACCGACTACGACTGATGCTAAGAGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTAAAGCTTCGTGAAGAGAAGCGCAAACGAGAACATGATCGTCTCCACAATTACCCTGCCTGGGCGAAGTCTCTCTCTCTCTGTTCTTTCTGTATGATTGTGTGTTTCGTTTTTCTTTTTTTCACTGTGTTTGATTGCTAA

Protein sequence

MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSLCSFCMIVCFVFLFFTVFDC
Homology
BLAST of HG10015749 vs. NCBI nr
Match: KAA0034098.1 (hypothetical protein E6C27_scaffold65G00860 [Cucumis melo var. makuwa] >TYK15821.1 hypothetical protein E5676_scaffold35G003260 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSV  GVGLGL FTN N +C F SNTR FPQS+ S PEFHPISLRSR LL ENG+DSKFD
Sbjct: 1   MSVLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTD-AKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSL 112
             STSTPTTTD  KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSL
Sbjct: 61  AMSTSTPTTTDPKKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSL 112

BLAST of HG10015749 vs. NCBI nr
Match: XP_022139316.1 (uncharacterized protein LOC111010260 isoform X2 [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVFKGVGLGL F NAN SC FPSN RIF +SVTSN EF PISLR R LL ENGNDSKFD
Sbjct: 1   MSVFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFD 60

Query: 61  TKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
           T+S+STPT  DAK SGT+AR RRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  TRSSSTPTAADAKGSGTTARGRRLLKLREEKRKREHDRLHNYPAWAKVL 109

BLAST of HG10015749 vs. NCBI nr
Match: XP_022139315.1 (uncharacterized protein LOC111010260 isoform X1 [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVFKGVGLGL F NAN SC FPSN RIF +SVTSN EF PISLR R LL ENGNDSKFD
Sbjct: 1   MSVFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFD 60

Query: 61  TKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
           T+S+STPT  DAK SGT+AR RRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  TRSSSTPTAADAKGSGTTARGRRLLKLREEKRKREHDRLHNYPAWAKVL 109

BLAST of HG10015749 vs. NCBI nr
Match: XP_004147093.1 (uncharacterized protein LOC101211689 [Cucumis sativus] >KAE8648627.1 hypothetical protein Csa_008691 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38
Identity = 90/110 (81.82%), Postives = 94/110 (85.45%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVF G+GLGL FTN N +C F SNTR FPQS+TS PEF PISLRSR LL ENG+DSKFD
Sbjct: 1   MSVFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTDA-KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
             STSTPT TDA KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  AVSTSTPTATDAKKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVL 110

BLAST of HG10015749 vs. NCBI nr
Match: XP_038893156.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120082019 [Benincasa hispida])

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVFKGVGLGL FTN+N    FPSNTRIFPQS TSNPEFHPISLRSR LL ENG+DSKFD
Sbjct: 1   MSVFKGVGLGLAFTNSN----FPSNTRIFPQSFTSNPEFHPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSLCSFCMIVCF 120
            KSTST TTTDAKSSGTSARSRRLLKLREEKRKRE DRLHN P  + S+SL   C+ +C 
Sbjct: 61  AKSTSTRTTTDAKSSGTSARSRRLLKLREEKRKRERDRLHNDPGRSVSISL---CVXLCV 115

Query: 121 VF 123
            F
Sbjct: 121 TF 115

BLAST of HG10015749 vs. ExPASy TrEMBL
Match: A0A5A7STY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003260 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.5e-40
Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSV  GVGLGL FTN N +C F SNTR FPQS+ S PEFHPISLRSR LL ENG+DSKFD
Sbjct: 1   MSVLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTD-AKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSL 112
             STSTPTTTD  KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSL
Sbjct: 61  AMSTSTPTTTDPKKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSLSL 112

BLAST of HG10015749 vs. ExPASy TrEMBL
Match: A0A6J1CCA9 (uncharacterized protein LOC111010260 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010260 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.5e-39
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVFKGVGLGL F NAN SC FPSN RIF +SVTSN EF PISLR R LL ENGNDSKFD
Sbjct: 1   MSVFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFD 60

Query: 61  TKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
           T+S+STPT  DAK SGT+AR RRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  TRSSSTPTAADAKGSGTTARGRRLLKLREEKRKREHDRLHNYPAWAKVL 109

BLAST of HG10015749 vs. ExPASy TrEMBL
Match: A0A6J1CBZ8 (uncharacterized protein LOC111010260 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010260 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.5e-39
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVFKGVGLGL F NAN SC FPSN RIF +SVTSN EF PISLR R LL ENGNDSKFD
Sbjct: 1   MSVFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFD 60

Query: 61  TKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
           T+S+STPT  DAK SGT+AR RRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  TRSSSTPTAADAKGSGTTARGRRLLKLREEKRKREHDRLHNYPAWAKVL 109

BLAST of HG10015749 vs. ExPASy TrEMBL
Match: A0A1S3BDB3 (uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-38
Identity = 90/110 (81.82%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSV  GVGLGL FTN N +C F SNTR FPQS+ S PEFHPISLRSR LL ENG+DSKFD
Sbjct: 1   MSVLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTD-AKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
             STSTPTTTD  KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  AMSTSTPTTTDPKKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVL 110

BLAST of HG10015749 vs. ExPASy TrEMBL
Match: A0A6J1HT13 (uncharacterized protein LOC111466517 OS=Cucurbita maxima OX=3661 GN=LOC111466517 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 79/109 (72.48%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVF+ +GLGL F NA  +C F SN  IF +SVT N EF  ISLRSR +L ENG++S FD
Sbjct: 1   MSVFEVIGLGLAFRNATSTCNFLSNPGIFLKSVTPNREFQLISLRSRAMLSENGHESMFD 60

Query: 61  TKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
            KS STPT TDAK SGT+ARSRRLLKLREEKRKREHDRLHNYPAWAK L
Sbjct: 61  AKSASTPTATDAKGSGTTARSRRLLKLREEKRKREHDRLHNYPAWAKVL 109

BLAST of HG10015749 vs. TAIR 10
Match: AT5G08400.1 (Protein of unknown function (DUF3531) )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 19  SCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTS 78
           SC    N    P  V+    F        TL+  + N      +     +  + K SGT+
Sbjct: 11  SCTMNLNFAFSPFLVSQRQPFSSHKRNLHTLVAVSANSDNLAGEDNGGISAAN-KGSGTT 70

Query: 79  ARSRRLLKLREEKRKREHDRLHNYPAWAKSLSLCSFCMIVCFVFL 124
           AR RRLLK+REEKRKR++DRLH+YP+WAK L L     +  FVFL
Sbjct: 71  ARGRRLLKVREEKRKRDYDRLHDYPSWAKYLFLSFSFALQVFVFL 114

BLAST of HG10015749 vs. TAIR 10
Match: AT5G08400.2 (Protein of unknown function (DUF3531) )

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-09
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 19  SCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTS 78
           SC    N    P  V+    F        TL+  + N      +     +  + K SGT+
Sbjct: 11  SCTMNLNFAFSPFLVSQRQPFSSHKRNLHTLVAVSANSDNLAGEDNGGISAAN-KGSGTT 70

Query: 79  ARSRRLLKLREEKRKREHDRLHNYPAWAKSL 110
           AR RRLLK+REEKRKR++DRLH+YP+WAK L
Sbjct: 71  ARGRRLLKVREEKRKRDYDRLHDYPSWAKVL 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034098.11.3e-3983.04hypothetical protein E6C27_scaffold65G00860 [Cucumis melo var. makuwa] >TYK15821... [more]
XP_022139316.11.1e-3881.65uncharacterized protein LOC111010260 isoform X2 [Momordica charantia][more]
XP_022139315.11.1e-3881.65uncharacterized protein LOC111010260 isoform X1 [Momordica charantia][more]
XP_004147093.12.5e-3881.82uncharacterized protein LOC101211689 [Cucumis sativus] >KAE8648627.1 hypothetica... [more]
XP_038893156.13.3e-3877.87LOW QUALITY PROTEIN: uncharacterized protein LOC120082019 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7STY86.5e-4083.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CCA95.5e-3981.65uncharacterized protein LOC111010260 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CBZ85.5e-3981.65uncharacterized protein LOC111010260 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A1S3BDB32.7e-3881.82uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=... [more]
A0A6J1HT135.0e-3272.48uncharacterized protein LOC111466517 OS=Cucurbita maxima OX=3661 GN=LOC111466517... [more]
Match NameE-valueIdentityDescription
AT5G08400.12.0e-0940.00Protein of unknown function (DUF3531) [more]
AT5G08400.27.7e-0940.66Protein of unknown function (DUF3531) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..81
NoneNo IPR availablePANTHERPTHR46737OS02G0827600 PROTEINcoord: 30..110
NoneNo IPR availablePANTHERPTHR46737:SF4BNAANNG06110D PROTEINcoord: 30..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10015749.1HG10015749.1mRNA