HG10014644 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014644
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein MNN4-like
LocationChr02: 17132168 .. 17132407 (-)
RNA-Seq ExpressionHG10014644
SyntenyHG10014644
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATATGCTATCCGAGTTATGGTGAAACTAGGATCTAAATGGGAGACTTCACCCACAGACATTCACACCTTGCCTTCTAAATGCCTCACACCTGAGGCCAACCTGTGGGTGTATTTAGTGAAGAAAAGGTTGATCCCTACCACACACGACGCATCTGTCTCAAGGGATCGAGTTATGGCAGCATACTGCATCATGCAGAGGATCCCCATTGATGTTGACAGCATCATCGCAGCCTAA

mRNA sequence

ATGCAATATGCTATCCGAGTTATGGTGAAACTAGGATCTAAATGGGAGACTTCACCCACAGACATTCACACCTTGCCTTCTAAATGCCTCACACCTGAGGCCAACCTGTGGGTGTATTTAGTGAAGAAAAGGTTGATCCCTACCACACACGACGCATCTGTCTCAAGGGATCGAGTTATGGCAGCATACTGCATCATGCAGAGGATCCCCATTGATGTTGACAGCATCATCGCAGCCTAA

Coding sequence (CDS)

ATGCAATATGCTATCCGAGTTATGGTGAAACTAGGATCTAAATGGGAGACTTCACCCACAGACATTCACACCTTGCCTTCTAAATGCCTCACACCTGAGGCCAACCTGTGGGTGTATTTAGTGAAGAAAAGGTTGATCCCTACCACACACGACGCATCTGTCTCAAGGGATCGAGTTATGGCAGCATACTGCATCATGCAGAGGATCCCCATTGATGTTGACAGCATCATCGCAGCCTAA

Protein sequence

MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVMAAYCIMQRIPIDVDSIIAA
Homology
BLAST of HG10014644 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
           M+ A++V+++LG KW  S   + TL SK L  E  LWVYLVKKRLI TTHD +VSRDRVM
Sbjct: 332 MEDALQVLMQLGMKWSVSLKGVSTLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVM 391

Query: 61  AAYCIMQRIPIDVDSIIA 79
           A YCI++ IPIDV  +IA
Sbjct: 392 ATYCIVRSIPIDVGQLIA 409

BLAST of HG10014644 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
           M+ A+R + + G++W  S   I TL S  L PEA LWVYLVK+R+IPT+HD +VSRDRVM
Sbjct: 271 MEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVM 330

Query: 61  AAYCIMQRIPIDVDSIIAA 80
           AAYCI   I IDV  +IAA
Sbjct: 331 AAYCIACGILIDVSHLIAA 349

BLAST of HG10014644 vs. NCBI nr
Match: XP_038882424.1 (uncharacterized protein LOC120073695 [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 1  MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
          ++ A+ V+ + G +W    T IH L S  L P+A LWVYLVKK L PTTHD ++SRD+VM
Sbjct: 3  LEDALSVLTQPGMQWSVLLTGIHMLASNRLLPKARLWVYLVKKWLNPTTHDKTISRDKVM 62

Query: 61 AAYCIMQRIPIDVDSII 78
          A Y I   IPI+V  +I
Sbjct: 63 ATYYIAHDIPINVGRLI 79

BLAST of HG10014644 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDR 59
           M+ A++V+ + G++W  SP  I TL SK L  +  LWVYLVKK+LIPTTHD +VS+D+
Sbjct: 304 MRNALKVLAQPGTRWTVSPKGIRTLESKSLLSKGRLWVYLVKKQLIPTTHDRTVSKDQ 361

BLAST of HG10014644 vs. NCBI nr
Match: KAA0054837.1 (hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK27771.1 hypothetical protein E5676_scaffold1142G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-09
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
           MQ A+  +     KW+ +    + L    LT EA++W+  +KK+L+PT HD ++S +R+M
Sbjct: 166 MQEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIM 225

Query: 61  AAYCIMQRIPIDVDSII 78
             YCIM+ IP+DVD II
Sbjct: 226 LLYCIMEEIPVDVDEII 242

BLAST of HG10014644 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
           MQ A+  +     KW+ +    + L    LT EA++W+  +KK+L+PT HD ++S +R+M
Sbjct: 166 MQEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIM 225

Query: 61  AAYCIMQRIPIDVDSII 78
             YCIM+ IP+DVD II
Sbjct: 226 LLYCIMEEIPVDVDEII 242

BLAST of HG10014644 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
           MQ A+  +   G KW+ +P   + L    L   A++W+  +KK L+PT HD ++S +R+M
Sbjct: 222 MQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIM 281

Query: 61  AAYCIMQRIPIDVDSII 78
             YCIM+ IP++VD II
Sbjct: 282 LLYCIMEEIPLNVDEII 298

BLAST of HG10014644 vs. ExPASy TrEMBL
Match: A0A5D3D2B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001360 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08
Identity = 28/78 (35.90%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1   MQYAIRVMVKLGSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVM 60
           ++YA++ +   G+KW+ + T  + L    L  E ++W+   KK++IPT HD ++S +R+M
Sbjct: 52  LEYALKRVAWSGTKWDITITRRYHLFLHNLNIEVSIWLVFEKKKIIPTRHDIAISMERIM 111

Query: 61  AAYCIMQRIPIDVDSIIA 79
             YCIM+ IP+++  II+
Sbjct: 112 LVYCIMEEIPMNIGEIIS 129

BLAST of HG10014644 vs. ExPASy TrEMBL
Match: A0A5D3BSJ3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G00050 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.8e-07
Identity = 25/65 (38.46%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 13  SKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVMAAYCIMQRIPID 72
           +KW+ +PT+ + L    L  + ++W+  VKK+++PT +D+++S D+V+  YCIM+ IP++
Sbjct: 154 TKWDRTPTEKYQLFRHNLNIKFSVWLLFVKKKIMPTHYDSTISMDKVILHYCIMEEIPVN 213

Query: 73  VDSII 78
           +D II
Sbjct: 214 MDKII 218

BLAST of HG10014644 vs. ExPASy TrEMBL
Match: A0A5D3BB37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00030 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 12 GSKWETSPTDIHTLPSKCLTPEANLWVYLVKKRLIPTTHDASVSRDRVMAAYCIMQRIPI 71
          G+ W+ +P   + L    L  +AN+W++L+K +L+PT HD ++S D+VM  YCIMQ I +
Sbjct: 12 GTIWDKTPIGKYQLFPHNLAMKANIWLFLMKIKLMPTRHDNTISLDKVMLLYCIMQEISV 71

Query: 72 DV 74
          +V
Sbjct: 72 NV 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876674.17.5e-1760.26chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
XP_038904385.11.8e-1558.23uncharacterized protein LOC120090747 [Benincasa hispida][more]
XP_038882424.11.6e-1150.65uncharacterized protein LOC120073695 [Benincasa hispida][more]
XP_038898613.14.4e-0953.45LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida][more]
KAA0054837.15.7e-0941.56hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK2777... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DVQ62.8e-0941.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZE01.4e-0840.26Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A5D3D2B54.0e-0835.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BSJ35.8e-0738.46Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G... [more]
A0A5D3BB372.2e-0641.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014644.1HG10014644.1mRNA