HG10014004 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014004
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 6756739 .. 6757456 (-)
RNA-Seq ExpressionHG10014004
SyntenyHG10014004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTAATGGCTGGTTGGGACTCCCCGGCGACTGACCCCCAAGAAGGTAATATCAGTTTTTCAGATTAAATTCAATTTTGAATTTTGTTTTTCCTCTCTAAAATTAATAATTTTAATGTTTATATCCAGTGAGTCACCGGAGGAACAAGTCATTGACAAAAGAAGAAATTGAAGCGTTTTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTAAGAGCCATTTTAAGTCCATATGAGAGCTCTGAGGTAATTTTTTTTTTTTTTCAATTTTGGAGTGTTTGGATTTTTTTCATTTTTTATTAATTAATTATGGAATTTTGGGTTTTGGCAGGAAAAGAAAATGGAATATGGTGGAAATAATAATCTTCAGAGATCAGCCTCTGTGCCTCCATTCAATGCAAGGAAGGGTTTATTGAACATGGAATCTGAAACTAACTTAGAAAAGCCCAAGAAAAATGCCTGGTAATTATATAATATATTACTCTCCTCCTTTAAATTTAATTAAAATATGATAAAAATGCAAAATATTTGTGAGTATGAATTATAAATGTTGGGGGTGAATCTGTCATTTCCACAGGTGGAGAAGAAGCAACTGGGCGTTTCTAAACGAACCACCGGAGACAGAAGGATCTGGTAACAGCTACGTGTCGCAGTTCCACGTGGCAAACATGGCGGCTTCCAGACTTGGTCGCGGTGGCGTCAGTGCTTGA

mRNA sequence

ATGGGTTCTTTAATGGCTGGTTGGGACTCCCCGGCGACTGACCCCCAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACAAAAGAAGAAATTGAAGCGTTTTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTAAGAGCCATTTTAAGTCCATATGAGAGCTCTGAGGAAAAGAAAATGGAATATGGTGGAAATAATAATCTTCAGAGATCAGCCTCTGTGCCTCCATTCAATGCAAGGAAGGGTTTATTGAACATGGAATCTGAAACTAACTTAGAAAAGCCCAAGAAAAATGCCTGGTGGAGAAGAAGCAACTGGGCGTTTCTAAACGAACCACCGGAGACAGAAGGATCTGGTAACAGCTACGTGTCGCAGTTCCACGTGGCAAACATGGCGGCTTCCAGACTTGGTCGCGGTGGCGTCAGTGCTTGA

Coding sequence (CDS)

ATGGGTTCTTTAATGGCTGGTTGGGACTCCCCGGCGACTGACCCCCAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACAAAAGAAGAAATTGAAGCGTTTTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTAAGAGCCATTTTAAGTCCATATGAGAGCTCTGAGGAAAAGAAAATGGAATATGGTGGAAATAATAATCTTCAGAGATCAGCCTCTGTGCCTCCATTCAATGCAAGGAAGGGTTTATTGAACATGGAATCTGAAACTAACTTAGAAAAGCCCAAGAAAAATGCCTGGTGGAGAAGAAGCAACTGGGCGTTTCTAAACGAACCACCGGAGACAGAAGGATCTGGTAACAGCTACGTGTCGCAGTTCCACGTGGCAAACATGGCGGCTTCCAGACTTGGTCGCGGTGGCGTCAGTGCTTGA

Protein sequence

MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKKMEYGGNNNLQRSASVPPFNARKGLLNMESETNLEKPKKNAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGVSA
Homology
BLAST of HG10014004 vs. NCBI nr
Match: XP_038898962.1 (uncharacterized protein LOC120086405 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 132/144 (91.67%), Postives = 135/144 (93.75%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKK 60
           MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSP+E+SEEKK
Sbjct: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETSEEKK 60

Query: 61  MEYGGNNNLQRSASVPPFNARKGLLNMESETNLEKPKKNAWWRRSNWAFLNEPPETEGSG 120
           ME GG  NLQRSAS+PPF   KGLL MESE NLEKPKKNAWWRRSNWAFLNEPPETEGSG
Sbjct: 61  MENGG--NLQRSASLPPFKTGKGLLEMESEKNLEKPKKNAWWRRSNWAFLNEPPETEGSG 120

Query: 121 NSYVSQFHVANMAASRLGRGGVSA 145
           NSYVSQFHVANMAASRLG GGVSA
Sbjct: 121 NSYVSQFHVANMAASRLGPGGVSA 142

BLAST of HG10014004 vs. NCBI nr
Match: XP_008466545.1 (PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa] >TYK19682.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 3.0e-64
Identity = 129/145 (88.97%), Postives = 136/145 (93.79%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKK 60
           MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSP+E+ EEK+
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEEKE 60

Query: 61  MEYGGNNNLQRSASVPPFNARKGLL-NMESETNLEKPKKNAWWRRSNWAFLNEPPETEGS 120
            E  G NNLQRSAS+PPFN RKGLL N++SETNLEKP+KN WWRRSNWAFLNEPPETEGS
Sbjct: 61  KENVG-NNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANMAASRLGRGGVSA 145
           GNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 GNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of HG10014004 vs. NCBI nr
Match: XP_004147861.1 (uncharacterized protein LOC101222738 [Cucumis sativus] >KGN59980.1 hypothetical protein Csa_001013 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-63
Identity = 128/145 (88.28%), Postives = 134/145 (92.41%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKK 60
           MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSP+E+ EEK+
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEEKE 60

Query: 61  MEYGGNNNLQRSASVPPFNARKGLL-NMESETNLEKPKKNAWWRRSNWAFLNEPPETEGS 120
               G NNLQRSAS+PPFN RKGL  NM+SETNLEKP+KN WWRRSNWAFLNEPPETEGS
Sbjct: 61  KGNIG-NNLQRSASMPPFNTRKGLRENMKSETNLEKPEKNPWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANMAASRLGRGGVSA 145
           GNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 GNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of HG10014004 vs. NCBI nr
Match: XP_022982140.1 (uncharacterized protein LOC111481065 [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 124/146 (84.93%), Postives = 136/146 (93.15%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEE-K 60
           MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSP++S EE K
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KMEYGGNNNLQRSASVPPFNARKGLLNMESETNLE-KPKKNAWWRRSNWAFLNEPPETEG 120
           K+E+GG NNLQRS+SVPPFN RKGLL+MESE +L+ KPKKN WWRRSNWAFLNEPP  EG
Sbjct: 61  KVEFGG-NNLQRSSSVPPFNTRKGLLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120

Query: 121 SGNSYVSQFHVANMAASRLGRGGVSA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of HG10014004 vs. NCBI nr
Match: XP_022940046.1 (uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothetical protein SDJN03_01886, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037867.1 hypothetical protein SDJN02_01498 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-61
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEE-K 60
           MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSP++S EE K
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KMEYGGNNNLQRSASVPPFNARKGLLNMESETNLE-KPKKNAWWRRSNWAFLNEPPETEG 120
           K+E+GG NNLQRS+SVPPFN RKG L+MESE +L+ KPKKN WWRRSNWAFLNEPP  EG
Sbjct: 61  KVEFGG-NNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120

Query: 121 SGNSYVSQFHVANMAASRLGRGGVSA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of HG10014004 vs. ExPASy TrEMBL
Match: A0A5D3D820 (Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00760 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 129/145 (88.97%), Postives = 136/145 (93.79%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKK 60
           MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSP+E+ EEK+
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEEKE 60

Query: 61  MEYGGNNNLQRSASVPPFNARKGLL-NMESETNLEKPKKNAWWRRSNWAFLNEPPETEGS 120
            E  G NNLQRSAS+PPFN RKGLL N++SETNLEKP+KN WWRRSNWAFLNEPPETEGS
Sbjct: 61  KENVG-NNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANMAASRLGRGGVSA 145
           GNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 GNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of HG10014004 vs. ExPASy TrEMBL
Match: A0A1S3CST6 (uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 129/145 (88.97%), Postives = 136/145 (93.79%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKK 60
           MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSP+E+ EEK+
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEEKE 60

Query: 61  MEYGGNNNLQRSASVPPFNARKGLL-NMESETNLEKPKKNAWWRRSNWAFLNEPPETEGS 120
            E  G NNLQRSAS+PPFN RKGLL N++SETNLEKP+KN WWRRSNWAFLNEPPETEGS
Sbjct: 61  KENVG-NNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANMAASRLGRGGVSA 145
           GNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 GNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of HG10014004 vs. ExPASy TrEMBL
Match: A0A0A0LDC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859670 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 128/145 (88.28%), Postives = 134/145 (92.41%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEEKK 60
           MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSP+E+ EEK+
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEEKE 60

Query: 61  MEYGGNNNLQRSASVPPFNARKGLL-NMESETNLEKPKKNAWWRRSNWAFLNEPPETEGS 120
               G NNLQRSAS+PPFN RKGL  NM+SETNLEKP+KN WWRRSNWAFLNEPPETEGS
Sbjct: 61  KGNIG-NNLQRSASMPPFNTRKGLRENMKSETNLEKPEKNPWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANMAASRLGRGGVSA 145
           GNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 GNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of HG10014004 vs. ExPASy TrEMBL
Match: A0A6J1J1T2 (uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.7e-62
Identity = 124/146 (84.93%), Postives = 136/146 (93.15%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEE-K 60
           MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSP++S EE K
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KMEYGGNNNLQRSASVPPFNARKGLLNMESETNLE-KPKKNAWWRRSNWAFLNEPPETEG 120
           K+E+GG NNLQRS+SVPPFN RKGLL+MESE +L+ KPKKN WWRRSNWAFLNEPP  EG
Sbjct: 61  KVEFGG-NNLQRSSSVPPFNTRKGLLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120

Query: 121 SGNSYVSQFHVANMAASRLGRGGVSA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of HG10014004 vs. ExPASy TrEMBL
Match: A0A6J1FHE8 (uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC111445795 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPYESSEE-K 60
           MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSP++S EE K
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KMEYGGNNNLQRSASVPPFNARKGLLNMESETNLE-KPKKNAWWRRSNWAFLNEPPETEG 120
           K+E+GG NNLQRS+SVPPFN RKG L+MESE +L+ KPKKN WWRRSNWAFLNEPP  EG
Sbjct: 61  KVEFGG-NNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120

Query: 121 SGNSYVSQFHVANMAASRLGRGGVSA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of HG10014004 vs. TAIR 10
Match: AT1G19530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 59/136 (43.38%), Postives = 78/136 (57.35%), Query Frame = 0

Query: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQ-VHEEHLRAI--LSPYESSE 60
           MGSLM+GWDS   DP+ V  RR KSLT+EEI+ FWKTKK+   EEH++A   L   E ++
Sbjct: 1   MGSLMSGWDSRVRDPKSV--RRCKSLTREEIDTFWKTKKKNEEEEHVQAFSKLVTQEGAQ 60

Query: 61  EKKMEYGGNNNLQRSASVPPFNARKGLLNMESETNLEKPKKNAWWRRSNWAFLNEPPETE 120
            +  E    ++L  + S                      K + WWR++ WAFLNEP E E
Sbjct: 61  SQAKEKKSVDDLFENQS----------------------KSSGWWRKTYWAFLNEPREEE 112

Query: 121 GSGNSYVSQFHVANMA 134
           G  N+YVSQF VA++A
Sbjct: 121 GRPNNYVSQFKVAHIA 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038898962.11.4e-6691.67uncharacterized protein LOC120086405 [Benincasa hispida][more]
XP_008466545.13.0e-6488.97PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 put... [more]
XP_004147861.14.3e-6388.28uncharacterized protein LOC101222738 [Cucumis sativus] >KGN59980.1 hypothetical ... [more]
XP_022982140.11.4e-6184.93uncharacterized protein LOC111481065 [Cucurbita maxima][more]
XP_022940046.14.0e-6184.25uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D8201.4e-6488.97Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa ... [more]
A0A1S3CST61.4e-6488.97uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=... [more]
A0A0A0LDC22.1e-6388.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859670 PE=4 SV=1[more]
A0A6J1J1T26.7e-6284.93uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065... [more]
A0A6J1FHE82.0e-6184.25uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC1114457... [more]
Match NameE-valueIdentityDescription
AT1G19530.11.1e-1943.38unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR33872DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..135
NoneNo IPR availablePANTHERPTHR33872:SF2DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014004.1HG10014004.1mRNA