HG10013651 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013651
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHistidine-rich glycoprotein-like isoform X2
LocationChr02: 3456323 .. 3456667 (-)
RNA-Seq ExpressionHG10013651
SyntenyHG10013651
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACGATCGTGAATTCAGCTAAAGTGCCAACAACATCGAGAAAGGTCACGAACATCTCCACAACAACGATGGTCGTTGCTACTCTTAGCATTGTCGTTGTGTTGCTTCCGATGGGGGTGGAAGCGCATATCCCGACCGTCGGTCCGGTTGCTCAATGTATCCAAGGGTGCATAAAATCATTGTCAAGTTTAACTCCTAGTTATTGCATGAATATTTGTGGAGCTGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTCCTCCTCCTCCTCATCATCATCTTGTTCATGATGGTGATAAGCATCATATTATTGCTGATGCTGTTGTACCAAATTAG

mRNA sequence

ATGACGACGATCGTGAATTCAGCTAAAGTGCCAACAACATCGAGAAAGGTCACGAACATCTCCACAACAACGATGGTCGTTGCTACTCTTAGCATTGTCGTTGTGTTGCTTCCGATGGGGGTGGAAGCGCATATCCCGACCGTCGGTCCGGTTGCTCAATGTATCCAAGGGTGCATAAAATCATTGTCAAGTTTAACTCCTAGTTATTGCATGAATATTTGTGGAGCTGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTCCTCCTCCTCCTCATCATCATCTTGTTCATGATGGTGATAAGCATCATATTATTGCTGATGCTGTTGTACCAAATTAG

Coding sequence (CDS)

ATGACGACGATCGTGAATTCAGCTAAAGTGCCAACAACATCGAGAAAGGTCACGAACATCTCCACAACAACGATGGTCGTTGCTACTCTTAGCATTGTCGTTGTGTTGCTTCCGATGGGGGTGGAAGCGCATATCCCGACCGTCGGTCCGGTTGCTCAATGTATCCAAGGGTGCATAAAATCATTGTCAAGTTTAACTCCTAGTTATTGCATGAATATTTGTGGAGCTGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTCCTCCTCCTCCTCATCATCATCTTGTTCATGATGGTGATAAGCATCATATTATTGCTGATGCTGTTGTACCAAATTAG

Protein sequence

MTTIVNSAKVPTTSRKVTNISTTTMVVATLSIVVVLLPMGVEAHIPTVGPVAQCIQGCIKSLSSLTPSYCMNICGAEYRPLTTRHRETSPPPPHHHLVHDGDKHHIIADAVVPN
Homology
BLAST of HG10013651 vs. NCBI nr
Match: KAE8649837.1 (hypothetical protein Csa_012364 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-18
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 0

Query: 4   IVNSAKVPTTSRKVTNISTTTMVVATLSIVVVLLPMGVEAHIPTVGPVAQCIQGCIKSLS 63
           ++N  K+  TSR VT +   TM++AT+SIV+VL PMG +A IP VGP+AQCIQGC KSLS
Sbjct: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLS 60

Query: 64  SLTPSYCMNICGAEYRPLTTR-------------HRETSPPPPHHHLVHDGDKHH 106
           +LTP YCMN+CGAEY PL                H+E      HHH  H   +HH
Sbjct: 61  TLTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVEHHHEHHVQVEHH 114

BLAST of HG10013651 vs. NCBI nr
Match: KAA0064320.1 (histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-17
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 25  MVVATLSIVVVLLPMGVEAHIPTVGPVAQCIQGCIKSLSSLTPSYCMNICGAEYRPLTT- 84
           M+VATLSIV+V LPMG EA IP VGP+AQCIQGC +SLS+LTP YCMNICGAEY PLT  
Sbjct: 1   MIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNP 60

Query: 85  ---RHRETSPPPPHHHLVHDGDKHH 106
               H++      HHH  H   +HH
Sbjct: 61  IQDTHQKHHVQVEHHHEHHVHFEHH 84

BLAST of HG10013651 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 5   VNSAKVPTTSRKVTNISTTTMVVATLSIVVVLLPMGVEAHIPTVGPVAQCIQGCIKSLSS 64
           +NS K  +T R+V  +   TM+VA   I+V LLPM  EA +P  G V+QCIQGC KSL+ 
Sbjct: 1   MNSTK--STPRRV--LIVVTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAG 60

Query: 65  LTPSYCMNICGAEYRPLTTRHRETSPPPPHHHLVHDGDKHHIIADA 111
           LT  YC+ +C AE+ PL+          PHHH  HD    H+  DA
Sbjct: 61  LTSGYCLTLCSAEFHPLSAH--------PHHH-EHDHSHAHVRVDA 91

BLAST of HG10013651 vs. NCBI nr
Match: KAG6607883.1 (hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 9.1e-08
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 21  STTTMVV---ATLSIVVVLLPMGVEAHIPTVGPVAQCIQGCIKSLSSLTPSYCMNICGAE 80
           +T+TM++   A  ++ +VLLPM  EAHIPTVG + +CI+ C+ SL SL PSYC ++C AE
Sbjct: 5   TTSTMLIIIAAIAAVTIVLLPMPAEAHIPTVGVIPKCIKSCLSSLQSLGPSYCSDLCKAE 64

Query: 81  YRPLTTRHRETSPPPPHHHLVHDGDKH 105
           +           PPP H H      +H
Sbjct: 65  F-----------PPPRHQHQHQHRHRH 80

BLAST of HG10013651 vs. ExPASy TrEMBL
Match: A0A5A7VAR8 (Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004060 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 25  MVVATLSIVVVLLPMGVEAHIPTVGPVAQCIQGCIKSLSSLTPSYCMNICGAEYRPLTT- 84
           M+VATLSIV+V LPMG EA IP VGP+AQCIQGC +SLS+LTP YCMNICGAEY PLT  
Sbjct: 1   MIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNP 60

Query: 85  ---RHRETSPPPPHHHLVHDGDKHH 106
               H++      HHH  H   +HH
Sbjct: 61  IQDTHQKHHVQVEHHHEHHVHFEHH 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649837.15.7e-1850.43hypothetical protein Csa_012364 [Cucumis sativus][more]
KAA0064320.18.2e-1762.35histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266... [more]
KAG6591952.13.7e-0945.28hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607883.19.1e-0842.53hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAR84.0e-1762.35Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013651.1HG10013651.1mRNA