HG10012548 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012548
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Dynein light chain
Location	Chr01: 22283301 .. 22285328 (-)
RNA-Seq Expression	HG10012548
Synteny	HG10012548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAGAATCTCATCGCTCCAATCCTCCACCTCTAATGGTGAAGCCTGAATCTCAGGATCGCAAACCCTCATCTGCCGCTGCCCTCTCCAAGAAAATCGTCATCAAAAGCGCCGATATGTTCAGCGACATGCAGAAGGAAGCTATTGACATTGCCATAGCTGTTTGTGCTTCTTTCTCTCTAAATAACTACTCTTAATCTCATTATTCTATTCATTCCTCAACTGATTCCTTCACAATTTGTTTTGTTTAGGCATTTGAGAAGCATTCCGTTGAGAAGGATGTCGCCGAACTGATAAAGAAGGAGTTTGATAAGAATCATGGACCCACTTGGCATTGCATCGTCGGTCGTAATTTTGGTACCTTTTTTCACTCTCTAAGCCTCTTAATTTTCGCTTTCTTTCACTCTGATGGACCGAATCTCTATTGATTTCTCTTACTTTACCCTCTTGGAAATGCTTCGCCTACTTCAACTTCAATCTGTACGTTTCTTTCCCCCTCTCCTACTGAAATGGAGATCTAGCTTTCAATTTTATTTTTTTTTGGAGAGGGATGGTTTTTTGGGATTTTGACACCATTAGCTTGGCTCTTCTTTCAGGCTCCACCATTTAGCAGAAGCAAGATTTGTCTGCATAGGCAGTTTTAACCCATTAGTGTCTTAGTACATTGAAATTACATATATTCTTGCATCACTAGGAAAGTGAACTCTATTGGAGAATTTTGACTCCATTTGGTCCATCGCCTTACTCTATATTTTGCTAGCTAATTCTCAGCTACAGGAATCGTGTCAGCCTACATGAATTGAATCTCCGTGGATGGCTGGCTATGGTTGGTGGCAATTTGGGGGTGGGGCTCCCCATCTAATTTCGATGATGAGGCCAACAATCAAAGTGAGATAGGATTGTTTGGAACTATGCAAGTTGAATATTAGGTTCAAGTGTATCATAAGGACAAAGGCCAATATACGAATAGTTATTTTGGGGTTCAAATCTTCCCATTTTCAGTTTCTTCTTTTTTCGTAAAGAAGAATGTTAGGCAGTAAGCACGTAAGCAATATTTGACTTAGTTTTACTAGTCATAATTCAACCGAATCATTAGTGCTTTAATTTTATTTTGCAATGTGGTCATGCAGTTTTTAACTAGAGCTGACTTCACTGTGATATTGTCTATTTAGCAATTTTTATTCAACATGACTCAATCTGAAATCTGTATGATTCTGTTTGCATGGTGAATGGTAGGAATCAAAATATATTGTTTCATGTTTAATTGAAGAATCAAATGTTCAGATTCTTGGTATTTATGGAATGTAAAAGGTTGCTTGATGAGATACAGGGAGGTGATCTGCAACTTCTTTTTTTCTTTGTGCTGTTAGCGAAATCAACAATTCTTATAGGCAAAGAATAAAAGGTAGTGACCAGTGATCACATAACACGGACAGAGAAACTTTTAACAGTAAACTCTTGTTACTATGTCATTCTAAGATTTAGAGCTGAATGCTAAATGCTAAATGCTTTGACCTTAAGTTGTTATGTAATGTAACTGATAGTGCTCCCGCTCATGGTTTCGATTATCCTGTAGAGCCAAAATAATTCCTTCATATGGCCAATCCATTCGTCCCAAGCTTTGGAAGAACCCGGTGGTATTAGTGATCCATTTGGTTTCTTCATGTTGGCAGAGTGAACTTAATTGCTAACAATGCATACCTAGCCATAAAAATTGAGCTCTTGAAGTTATTATGTTAGCAGATGAAAAGAACCTATTGTTTTAGTTGCTGGCTTTAGGCTGAACATTTTTTACAATTCTAAAAAATATGCTTCCTGAATATTGCTGTGCATCGTCTGTTCTTGATTATTGAGCTTTATTCAGGGTCCTATTTGTGTTAATTCATTTTCCTGCATTAAATTATTATCAACGATGATTCTGTTCTCTGGTTTCTATTTCAGGTTCTTATGTAACACATGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAATTCTACTTTTCAAATCTGGTTGA

mRNA sequence

ATGAACCAAGAATCTCATCGCTCCAATCCTCCACCTCTAATGGTGAAGCCTGAATCTCAGGATCGCAAACCCTCATCTGCCGCTGCCCTCTCCAAGAAAATCGTCATCAAAAGCGCCGATATGTTCAGCGACATGCAGAAGGAAGCTATTGACATTGCCATAGCTGCATTTGAGAAGCATTCCGTTGAGAAGGATGTCGCCGAACTGATAAAGAAGGAGTTTGATAAGAATCATGGACCCACTTGGCATTGCATCGTCGGTCGTAATTTTGGTTCTTATGTAACACATGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAATTCTACTTTTCAAATCTGGTTGA

Coding sequence (CDS)

ATGAACCAAGAATCTCATCGCTCCAATCCTCCACCTCTAATGGTGAAGCCTGAATCTCAGGATCGCAAACCCTCATCTGCCGCTGCCCTCTCCAAGAAAATCGTCATCAAAAGCGCCGATATGTTCAGCGACATGCAGAAGGAAGCTATTGACATTGCCATAGCTGCATTTGAGAAGCATTCCGTTGAGAAGGATGTCGCCGAACTGATAAAGAAGGAGTTTGATAAGAATCATGGACCCACTTGGCATTGCATCGTCGGTCGTAATTTTGGTTCTTATGTAACACATGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAATTCTACTTTTCAAATCTGGTTGA

Protein sequence

MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG

Homology

[Close]

BLAST of HG10012548 vs. NCBI nr
Match: XP_038904701.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 9.2e-56
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MNQESHRSNPPPLMVKPES DRKPSSAAA+SKKIVIKSADMFSDMQKEAIDIAIAAFEKH
Sbjct: 1   MNQESHRSNPPPLMVKPESDDRKPSSAAAVSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKD+AE IKK+FDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG
Sbjct: 61  SVEKDIAEQIKKQFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 117

[Close]

BLAST of HG10012548 vs. NCBI nr
Match: XP_022945423.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 6.9e-51
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MN +S RSNP PLMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of HG10012548 vs. NCBI nr
Match: XP_022979977.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MNQES RSNP PLMVKPES+DRK SS AA +KKIVIKSADMF  MQKEA+DIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKA+LLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

[Close]

BLAST of HG10012548 vs. NCBI nr
Match: XP_022955505.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata])

HSP 1 Score: 204.5 bits (519), Expect = 4.9e-49
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSS-AAALSKKIVIKSADMFSDMQKEAIDIAIAAFEK 60
           MNQES RSNP PLMVKPES+DRK SS AAA +KKIVIKSADMF DMQKEA+DIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           HSVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKA+LLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of HG10012548 vs. NCBI nr
Match: XP_022973755.1 (dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 8.4e-49
Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MN +S RSN P LMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKH
Sbjct: 1   MNHDSKRSN-PSLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

[Close]

BLAST of HG10012548 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 30  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRN 89
           + +K VIK+ADM  DMQ++AID A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRN
Sbjct: 2   VDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 90  FGSYVTHETNHFVYFYLDQKAILLFKSG 118
           FGSYVTHET HF+YFYL Q AILLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of HG10012548 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 28  AALSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVG 87
           A+ S K VIK+ADM  +MQ +A+D A  A EK+++EKD+A  IKKEFD+ H PTWHCIVG
Sbjct: 2   ASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVG 61

Query: 88  RNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           RNFGSYVTHET HF+YFYL Q AILLFKSG
Sbjct: 62  RNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

[Close]

BLAST of HG10012548 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 32  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAILLFKSG 118
           SYVTHET HF+YFYL Q AILLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of HG10012548 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 32  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAILLFKSG 118
           SYVTHET HF+YFYL Q AILLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of HG10012548 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 32  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK + PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAILLFKSG 118
           SYVTHET HF+YFYL Q AILLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of HG10012548 vs. ExPASy TrEMBL
Match: A0A6J1G0U9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.3e-51
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MN +S RSNP PLMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of HG10012548 vs. ExPASy TrEMBL
Match: A0A6J1IQ69 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MNQES RSNP PLMVKPES+DRK SS AA +KKIVIKSADMF  MQKEA+DIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKA+LLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

[Close]

BLAST of HG10012548 vs. ExPASy TrEMBL
Match: A0A6J1GVA3 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSS-AAALSKKIVIKSADMFSDMQKEAIDIAIAAFEK 60
           MNQES RSNP PLMVKPES+DRK SS AAA +KKIVIKSADMF DMQKEA+DIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           HSVEKDVAE IKKEFD+ HGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKA+LLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of HG10012548 vs. ExPASy TrEMBL
Match: A0A6J1IC60 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MN +S RSN P LMVKPES+DRKPSSAA + KKIVIKSADMF DMQKEA+DIAIAAFEKH
Sbjct: 1   MNHDSKRSN-PSLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           SVEKDVAE IKKEFDK HGPTWHC++GRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

[Close]

BLAST of HG10012548 vs. ExPASy TrEMBL
Match: A0A6J1C8U0 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MNQESHRSNPPPLMVKPESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60
           MNQ++ R+NP  LMVKPES+DRKPSSA  L++K+VIKSADMF DMQKEA+DIAIAAFEK+
Sbjct: 1   MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKY 60

Query: 61  SVEKDVAELIKKEFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 118
           +VEKDVAE IK+EFDK HGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  AVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of HG10012548 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-38
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 32  KKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEKDVAELIKKEFDKNHGPTWHCIVGRNFG 91
           K+ VIKSADM  DMQKEAI+IAI+AFEK+SVEKD+AE IKKEFDK HG TWHCIVGRNFG
Sbjct: 38  KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFG 97

Query: 92  SYVTHETNHFVYFYLDQKAILLFKSG 118
           SYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 98  SYVTHETNHFVYFYLDQKAVLLFKSG 123

[Close]

BLAST of HG10012548 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-15
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 27  AAALSKKIVIKSADMFSDMQKEAIDIA---IAAFEKHSVEKDVAELIKKEFDKNHGPTWH 86
           AAA    + I +ADM   MQ  A   A   + + EK S  K +A  +KKEFDK +GP WH
Sbjct: 110 AAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWH 169

Query: 87  CIVGRNFGSYVTHETNHFVYFYLDQKAILLFKS 117
           CIVG +FGS+VTH T  F+YF +D+  +LLFK+
Sbjct: 170 CIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201

[Close]

BLAST of HG10012548 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-13
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 18  ESQDRKPSSAAALSKKIVIKSADMFSDMQKEAIDIA---IAAFEKHSVEKDVAELIKKEF 77
           E QD+K          + ++++DM    Q  A  ++   + A    +  K +A  +KK+F
Sbjct: 26  EQQDQKDEF------NVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDF 85

Query: 78  DKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKS 117
           D  +GP WHCIVG +FGSYVTH T  F+YF +D+  +LLFK+
Sbjct: 86  DSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121

[Close]

BLAST of HG10012548 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-12
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 30  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVEK--DVAELIKKEFDKNHGPTWHCIVG 89
           L  K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+++G  W CIVG
Sbjct: 2   LEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVG 61

Query: 90  RNFGSYVTHETNHFVYFYLDQKAILLFK 116
            +FGS+VTH +  F++F +    ILLFK
Sbjct: 62  THFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of HG10012548 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-11
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 30  LSKKIVIKSADMFSDMQKEAIDIAIAAFEKHSVE--KDVAELIKKEFDKNHGPTWHCIVG 89
           L  K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+ +G  W C+VG
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 90  RNFGSYVTHETNHFVYFYLDQKAILLFK 116
            NFG + TH    F+YF L+    L+FK
Sbjct: 62  SNFGCFFTHSKGTFIYFQLETLKFLIFK 89

The following BLAST results are available for this feature:

BLAST of HG10012548 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904701.1	9.2e-56	95.73	dynein light chain 1, cytoplasmic-like [Benincasa hispida]	[more]
XP_022945423.1	6.9e-51	87.18	dynein light chain 1, cytoplasmic-like [Cucurbita moschata]	[more]
XP_022979977.1	2.9e-49	87.18	dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]	[more]
XP_022955505.1	4.9e-49	88.14	dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]	[more]
XP_022973755.1	8.4e-49	86.32	dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]	[more]

BLAST of HG10012548 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q22799	1.1e-30	70.45	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q39580	1.8e-30	68.89	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
Q3MHR3	1.8e-30	70.93	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	1.8e-30	70.93	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	1.8e-30	70.93	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of HG10012548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G0U9	3.3e-51	87.18	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1	[more]
A0A6J1IQ69	1.4e-49	87.18	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1	[more]
A0A6J1GVA3	2.4e-49	88.14	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1	[more]
A0A6J1IC60	4.1e-49	86.32	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1	[more]
A0A6J1C8U0	2.0e-48	82.91	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1	[more]

BLAST of HG10012548 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15930.1	4.2e-38	86.05	Dynein light chain type 1 family protein	[more]
AT5G20110.1	4.9e-15	48.39	Dynein light chain type 1 family protein	[more]
AT1G23220.1	3.5e-13	38.24	Dynein light chain type 1 family protein	[more]
AT4G27360.1	5.1e-12	40.91	Dynein light chain type 1 family protein	[more]
AT1G52240.2	2.5e-11	39.77	RHO guanyl-nucleotide exchange factor 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 29..116 e-value: 1.8E-51 score: 187.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 33..116 e-value: 1.0E-37 score: 128.4
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 22..117
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 29..117 e-value: 1.1E-40 score: 139.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 30..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11886:SF95	DYNEIN LIGHT CHAIN	coord: 22..117
IPR019763	Dynein light chain, type 1/2, conserved site	PROSITE	PS01239	DYNEIN_LIGHT_1	coord: 83..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012548.1	HG10012548.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005875	microtubule associated complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding