HG10011207 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011207
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	pentatricopeptide repeat-containing protein At3g62890-like
Location	Chr01: 3484709 .. 3488487 (-)
RNA-Seq Expression	HG10011207
Synteny	HG10011207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTCCGCATGCCCAATGGAAGAGTGATTATCCATCAACCTATTGGAACAGCTGGAGGAAAAGTTAGTAGATTATTGTTCTGTGCTTTGCTGTTAGGTTAATGGCATTTTGTCCACTGTGATTGTAATTTCTGTTTCACCTGTATATTTTTGCTTTTTCAGTCACTGTTGAATGCGTGCAGCATTTCTAAAATTCTTTGTTCATTTTGTATAGTGGTTGCATTGGATGGTAGGGAGTTCAAAATAAAAAAGCCTCAGATAATAGTAATACCAACATTTTCTTCCAATTAATTAACCCTTGAATACTGCATAATCTAGTCTTTATGAACTTGATTTATTTTTGTGGAATTTTTCTGTAAGGACACGAAGCTTTGATGCTACACCTAGAAGAGCATGGAATGAAATTCAAGAGTTTTCCCGAAATTTTATTCCTATTGATATTGCCTGATGATCTATGTAATAACTAATAAGTTGATTTAAGCTTCCAATTATGGTAGTTCTCCCCTAATCACTATGTAATTCACTGGTTACCCCGTCCATGTCAGGCAACAGAGATGAGCATATTGGTACGAGAGATGGTGTATCAGAAGATTAGGCTAAAGAAAAGTTTTTCTAGAATCACAGGAAAACCATTGGAGCAGGTTTGCATCTACATTATTACTTTAACTAATTGGTTCTCAGTATTGTAAAGAAACCCTTAATATTTATGTATCATTTGCAGATTGAATTGGACACAGATCGTGATAATTTTATGAATCCTTGGGAAGCTAAAGAATATGGTTTGATCAACGAAGTTATTGATGATGGGAAGCCCGGACTTATTGCTCCAACTGCAGAGGCAACTCCTCCACTGAAAACCCGAGTCTGGGACCTATGGAAGGTTGAAGGGAGTCGGAAAGCCAAGAAGAATTTGCCTTCAGAAAACAAGATTTTGCAGAATGGATGTCAAGGGGGTCAAGCAAGTGACGAGGAGCACACGACCATTGAAAAAAAAAGGTATTTGATTGAACTCACCCTCCCTCCAAAAGGTCTATGCTTCGGACGCAAATCTCTTGGGAAACAGCCGTGGGTTTTTGAAGGTAAGAGTTATATGAATTTGTTGAGATTGAACTACCATTCTTCTGCATTTAAATCGTCTCTGATTCATAAACCCACCTTCAAACCCACCATTGATCTTTCAATTTTGGAGTTTCATTTGAAGCAATGTCAACACATAAACCAATTCAACCAAATTCTCTCTCAGATGGTTCTAACTGGCTTTCTAAGAGACACTTATGCTGCAAGCAGATTAATCAAATCCTCAACACATTTTCCCTTCGTTCACATCGATTACACCTGGCGAATCTTCAACTTCATTGAAAATACCAATTGCTTCATGTGGAATATGATGATGAGAGCTTATATTCAAACAGACTTGCCTGATTTTGCTTTCACTCTTTACAAATCTATGCTTTCCCAGTATCTGGGTGCTGATAATTACACCTACCCACTTCTGATTCAGGCTTGTTCCATTCGTCAGTCGGAATGGGAGGCAAAACAGGTACATAATCATGTTTTGAAGTTGGGTTTTGATTCAGATATTTATGTTCAAAATACTTTGATTCATTTCTTTTCTGTTTGCTCGAATATGACTGATGCTCGCCGGGTGTTTGATGAAAGTTCTGTTTTGGATTCGGTGTCATGGAATTCAATTTTGGCTGGGTATGTTCAAATAGGTAATGTAGAGGAGGCTAAGCATGTATATGATCAAATGCCAGAGAGGAGTATAATTGCTTCGAATTCTATGATTGTTTTGTTTGGCATCAAAGGGCTAGTGGTTGAAGCCTGTAAATTGTTTGATGAAATGCTAGAGAAAGATATGGTTACATGGAGTGCATTAATTGCTTGCTTTCAGCAGAATGAGATGTTTGAGGAGGCTATGACAACATTTGTAGGAATGCATAAAATTGGAGTAATGGTGGATGAGGTTGTATCTGTTAGTGCTCTTTCTGCTTGTGCAAACTTACTGATTATTAATATGGGGAAATTAATTCACAGCTTGGCTTTGAAAATTGGAACTGAATCTTATATAAATCTTCAAAATGCTTTGATCCATATGTACTCAAAATGTGGGGATATAGTGGTGGCACGAAAACTGTTTGATAAAGCCTACTTGTTAGACTTGATATCTTGGAACTCTATGATCTCGGGGTATTTGAAATGTGGTTTAGTTGAGAATGCCAAAGCCATTTTTGATTCCATGCCCAAGAAGGATGTTGTGTCTTGGAGTTCTATGATATCAGGTTATGCACAACATGACCTTTTTTATGAAACTCTCGCGCTTTTTCAAGAAATGCAAATGAATGGCTTCAAACCAGACGAGACCACGTTAGTGAGTGTGATATCTGCGTGCACTCGCCTGGCTGCCCTTGAGCAAGGGAAGTGGGTCCATGCTTATATAAAAAGGAAGGGTCTAACCATTAATATCATTCTAGGTACAACCCTCATAGACATGTATATGAAGTGTGGATGTGTTGTAACCGCCTTGGAGGTTTTCCATGGGATGGTTGAGAAAGGGGTTTCGACTTGGAATGCTCTAATTCTTGGGTTGGCTATGAATGGGTTGGTGGAAAGCTCGCTTGATATGTTTTCTAATATGAAAAAGTGTCATGTAACACCTAATGAGATAACATTTGTGGGAGTACTTGGTGCTTGTCGACACATGGGTTTAGTGGACGAAGGGCAGCATCATTTTCGTTCAATGATTCATGATCATAAGATAAAACCAAATGTTAAGCACTATGGGTGCATGGTTGATCTTCTAGGACGTGCAGGTAAGCTTCAAGAAGCAGAGGAACTTCTCAACCATATGCCTATGACACCAGATGTTGCTACTTGGGGTGCCTTACTTGGGGCTTGTAAGAAACATGGTGATAGTGAAATGGGAAGAAGGGTTGGGAGGAAGCTGATTGAGCTTCAACCTGACCATGATGGGTTCCACGTGTTGTTATCGAACATATATGCTTCAAAAGGAAAATGGGATGATGTTCTTGAGATTAGGGGCATGATGACAAAACATAGGGTTTTGAAGACTCCTGGTTGTAGCATGATTGAAGCAAATGGAGTTGTTCATGAATTTCTAGCTGGAGATAAAACACACCCTGACATGGATGCAATTGAGGTCATGTTAGGTGAAATGGCTATGAAATTGAAGTTAGAAGGTTATACACCAGACACAAATGAGGTTTTGCTTGATGTTGATGAAGAAGAAAAGGAAAGTACTCTGTTTAGACATAGTGAAAAGCTAGCCATTGCATTTGGCCTTATTAATGTTAGTCCACAAACACCAATCAGGATAATGAAAAACTTGAGAATATGTAATGACTGTCACACTGCTGCAAAATTAATCTCCAAGGCTTTTTGTCGTCAAATTGTGCTGAGAGATCGACATCGGTTTCATCACTTTGAGCACGGGTTTTGTTCATGCAAGGATTACTGGTAGCTGATGAGGATTCATAACACTTGACAACTTGATTCTTAGAGATTATTTTGGCTGCACTTTGCCTTATCTTCATTGGGACTGGCAATTAAGTTGCCTCCGAGGTCTTGCAAGCAGCAACTCAGAATGCTAGTTTCTCTTTATTTGGAAAGTTGCTGCAAAATGGCTTGGTGAACTTTTTTCCAGTGAGGGTGAAGAGTTTGCTACACTTACAAGTCCCTATAAAGACGTCAAGGCAATAATGGAGTGCCTCAAACTCTACCACGGATTGGTCCTGGGGTCGAAAGCTGCAGCATAA

mRNA sequence

ATGCGATTCCGCATGCCCAATGGAAGAGTGATTATCCATCAACCTATTGGAACAGCTGGAGGAAAAGCAACAGAGATGAGCATATTGGTACGAGAGATGGTGTATCAGAAGATTAGGCTAAAGAAAAGTTTTTCTAGAATCACAGGAAAACCATTGGAGCAGATTGAATTGGACACAGATCGTGATAATTTTATGAATCCTTGGGAAGCTAAAGAATATGGTTTGATCAACGAAGTTATTGATGATGGGAAGCCCGGACTTATTGCTCCAACTGCAGAGGCAACTCCTCCACTGAAAACCCGAGTCTGGGACCTATGGAAGGTTGAAGGGAGTCGGAAAGCCAAGAAGAATTTGCCTTCAGAAAACAAGATTTTGCAGAATGGATGTCAAGGGGGTCAAGCAAGTGACGAGGAGCACACGACCATTGAAAAAAAAAGGTATTTGATTGAACTCACCCTCCCTCCAAAAGGTCTATGCTTCGGACGCAAATCTCTTGGGAAACAGCCGTGGGTTTTTGAAGGTAAGAGTTATATGAATTTGTTGAGATTGAACTACCATTCTTCTGCATTTAAATCGTCTCTGATTCATAAACCCACCTTCAAACCCACCATTGATCTTTCAATTTTGGAGTTTCATTTGAAGCAATGTCAACACATAAACCAATTCAACCAAATTCTCTCTCAGATGGTTCTAACTGGCTTTCTAAGAGACACTTATGCTGCAAGCAGATTAATCAAATCCTCAACACATTTTCCCTTCGTTCACATCGATTACACCTGGCGAATCTTCAACTTCATTGAAAATACCAATTGCTTCATGTGGAATATGATGATGAGAGCTTATATTCAAACAGACTTGCCTGATTTTGCTTTCACTCTTTACAAATCTATGCTTTCCCAGTATCTGGGTGCTGATAATTACACCTACCCACTTCTGATTCAGGCTTGTTCCATTCGTCAGTCGGAATGGGAGGCAAAACAGGTACATAATCATGTTTTGAAGTTGGGTTTTGATTCAGATATTTATGTTCAAAATACTTTGATTCATTTCTTTTCTGTTTGCTCGAATATGACTGATGCTCGCCGGGTGTTTGATGAAAGTTCTGTTTTGGATTCGGTGTCATGGAATTCAATTTTGGCTGGTGAGGGTGAAGAGTTTGCTACACTTACAAGTCCCTATAAAGACGTCAAGGCAATAATGGAGTGCCTCAAACTCTACCACGGATTGGTCCTGGGGTCGAAAGCTGCAGCATAA

Coding sequence (CDS)

ATGCGATTCCGCATGCCCAATGGAAGAGTGATTATCCATCAACCTATTGGAACAGCTGGAGGAAAAGCAACAGAGATGAGCATATTGGTACGAGAGATGGTGTATCAGAAGATTAGGCTAAAGAAAAGTTTTTCTAGAATCACAGGAAAACCATTGGAGCAGATTGAATTGGACACAGATCGTGATAATTTTATGAATCCTTGGGAAGCTAAAGAATATGGTTTGATCAACGAAGTTATTGATGATGGGAAGCCCGGACTTATTGCTCCAACTGCAGAGGCAACTCCTCCACTGAAAACCCGAGTCTGGGACCTATGGAAGGTTGAAGGGAGTCGGAAAGCCAAGAAGAATTTGCCTTCAGAAAACAAGATTTTGCAGAATGGATGTCAAGGGGGTCAAGCAAGTGACGAGGAGCACACGACCATTGAAAAAAAAAGGTATTTGATTGAACTCACCCTCCCTCCAAAAGGTCTATGCTTCGGACGCAAATCTCTTGGGAAACAGCCGTGGGTTTTTGAAGGTAAGAGTTATATGAATTTGTTGAGATTGAACTACCATTCTTCTGCATTTAAATCGTCTCTGATTCATAAACCCACCTTCAAACCCACCATTGATCTTTCAATTTTGGAGTTTCATTTGAAGCAATGTCAACACATAAACCAATTCAACCAAATTCTCTCTCAGATGGTTCTAACTGGCTTTCTAAGAGACACTTATGCTGCAAGCAGATTAATCAAATCCTCAACACATTTTCCCTTCGTTCACATCGATTACACCTGGCGAATCTTCAACTTCATTGAAAATACCAATTGCTTCATGTGGAATATGATGATGAGAGCTTATATTCAAACAGACTTGCCTGATTTTGCTTTCACTCTTTACAAATCTATGCTTTCCCAGTATCTGGGTGCTGATAATTACACCTACCCACTTCTGATTCAGGCTTGTTCCATTCGTCAGTCGGAATGGGAGGCAAAACAGGTACATAATCATGTTTTGAAGTTGGGTTTTGATTCAGATATTTATGTTCAAAATACTTTGATTCATTTCTTTTCTGTTTGCTCGAATATGACTGATGCTCGCCGGGTGTTTGATGAAAGTTCTGTTTTGGATTCGGTGTCATGGAATTCAATTTTGGCTGGTGAGGGTGAAGAGTTTGCTACACTTACAAGTCCCTATAAAGACGTCAAGGCAATAATGGAGTGCCTCAAACTCTACCACGGATTGGTCCTGGGGTCGAAAGCTGCAGCATAA

Protein sequence

MRFRMPNGRVIIHQPIGTAGGKATEMSILVREMVYQKIRLKKSFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLINEVIDDGKPGLIAPTAEATPPLKTRVWDLWKVEGSRKAKKNLPSENKILQNGCQGGQASDEEHTTIEKKRYLIELTLPPKGLCFGRKSLGKQPWVFEGKSYMNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNMTDARRVFDESSVLDSVSWNSILAGEGEEFATLTSPYKDVKAIMECLKLYHGLVLGSKAAA

Homology

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BLAST of HG10011207 vs. NCBI nr
Match: XP_038904486.1 (pentatricopeptide repeat-containing protein At3g62890-like isoform X1 [Benincasa hispida])

HSP 1 Score: 401.4 bits (1030), Expect = 9.8e-108
Identity = 197/222 (88.74%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 160 FGRKSLGKQPWVFEGKSYMNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHI 219
           F RKS GKQPWV EG+ YMNLLRLN+ SSA KSSLIHKPTFKPTIDLSILEFHLKQCQHI
Sbjct: 9   FRRKSPGKQPWVSEGRRYMNLLRLNHLSSALKSSLIHKPTFKPTIDLSILEFHLKQCQHI 68

Query: 220 NQFNQILSQMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMR 279
            QFNQILSQM+LTGF+RDTYAASRLIK ST+FPF+HIDYT RIFNFIENTNCFMWNMMMR
Sbjct: 69  KQFNQILSQMLLTGFVRDTYAASRLIKFSTNFPFIHIDYTRRIFNFIENTNCFMWNMMMR 128

Query: 280 AYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDS 339
           AYIQT+ P FAFTLYKSMLSQ L ADNYTYPLL QACSIR+SEWEAKQVHNHVLKLGFDS
Sbjct: 129 AYIQTNSPHFAFTLYKSMLSQDLCADNYTYPLLFQACSIRRSEWEAKQVHNHVLKLGFDS 188

Query: 340 DIYVQNTLIHFFSVCSNMTDARRVFDESSVLDSVSWNSILAG 382
           D+YVQNTLIHFFS CSNM DARRVFDESSVLDSVSWNSILAG
Sbjct: 189 DVYVQNTLIHFFSSCSNMIDARRVFDESSVLDSVSWNSILAG 230

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BLAST of HG10011207 vs. NCBI nr
Match: XP_016902068.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 8.8e-101
Identity = 186/240 (77.50%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 168 QPWVFEGKSYMNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILS 227
           Q WV EGK Y+N L+ N+ S A  SSLIHKPTFKPTIDLSILEFHL +CQHINQFNQILS
Sbjct: 7   QRWVCEGKRYVNFLKSNHLSYARISSLIHKPTFKPTIDLSILEFHLNKCQHINQFNQILS 66

Query: 228 QMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLP 287
           QM+LTGF+R+TYAASRLIK STHFPF+HIDYT RIFNFIENTNCFMWNMM+RAYIQT+ P
Sbjct: 67  QMLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSP 126

Query: 288 DFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTL 347
            FAFTLYKSMLS YLGADNYTYPLLIQACSIR+SEWEAKQVHNHVLKLGFDSD+YV+NTL
Sbjct: 127 HFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 186

Query: 348 IHFFSVCSNMTDARRVFDESSVLDSVSWNSILAGEGEEFATLTSPYKDVKAIMECLKLYH 407
           I+ FSVCSNMTDARRVFDE+S+LDSVSWNSILAG           Y  +  + E   +YH
Sbjct: 187 INCFSVCSNMTDARRVFDENSILDSVSWNSILAG-----------YVQIGNVEEAKHIYH 235

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BLAST of HG10011207 vs. NCBI nr
Match: XP_011651205.1 (pentatricopeptide repeat-containing protein At3g62890 isoform X1 [Cucumis sativus] >XP_031738842.1 pentatricopeptide repeat-containing protein At3g62890 isoform X1 [Cucumis sativus] >XP_031738843.1 pentatricopeptide repeat-containing protein At3g62890 isoform X1 [Cucumis sativus])

HSP 1 Score: 372.9 bits (956), Expect = 3.7e-99
Identity = 185/240 (77.08%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 168 QPWVFEGKSYMNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILS 227
           Q WV EGK Y+NLL+ N+ S    SSLIHKPTFKPTI+LSILEFHL +CQHINQFNQILS
Sbjct: 7   QLWVCEGKRYVNLLKSNHLSYGRISSLIHKPTFKPTINLSILEFHLNRCQHINQFNQILS 66

Query: 228 QMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLP 287
           QM+LTGF+R+TYAASRLIK STHFPF+HIDYT RIFNFIENTNCFMWNMM+RAYIQT+ P
Sbjct: 67  QMLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSP 126

Query: 288 DFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTL 347
            FAFTLYKSMLS YLGADNYTYPLLIQACSIR+SEWEAKQVHNHVLKLGFDSD+YV+NTL
Sbjct: 127 HFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 186

Query: 348 IHFFSVCSNMTDARRVFDESSVLDSVSWNSILAGEGEEFATLTSPYKDVKAIMECLKLYH 407
           I+ FSVCSNMTDA RVF+ESSVLDSVSWNSILAG           Y ++  + E   +YH
Sbjct: 187 INCFSVCSNMTDACRVFNESSVLDSVSWNSILAG-----------YIEIGNVEEAKHIYH 235

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BLAST of HG10011207 vs. NCBI nr
Match: XP_031738844.1 (pentatricopeptide repeat-containing protein At5g66520 isoform X2 [Cucumis sativus])

HSP 1 Score: 372.9 bits (956), Expect = 3.7e-99
Identity = 185/240 (77.08%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 168 QPWVFEGKSYMNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILS 227
           Q WV EGK Y+NLL+ N+ S    SSLIHKPTFKPTI+LSILEFHL +CQHINQFNQILS
Sbjct: 7   QLWVCEGKRYVNLLKSNHLSYGRISSLIHKPTFKPTINLSILEFHLNRCQHINQFNQILS 66

Query: 228 QMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLP 287
           QM+LTGF+R+TYAASRLIK STHFPF+HIDYT RIFNFIENTNCFMWNMM+RAYIQT+ P
Sbjct: 67  QMLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSP 126

Query: 288 DFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTL 347
            FAFTLYKSMLS YLGADNYTYPLLIQACSIR+SEWEAKQVHNHVLKLGFDSD+YV+NTL
Sbjct: 127 HFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 186

Query: 348 IHFFSVCSNMTDARRVFDESSVLDSVSWNSILAGEGEEFATLTSPYKDVKAIMECLKLYH 407
           I+ FSVCSNMTDA RVF+ESSVLDSVSWNSILAG           Y ++  + E   +YH
Sbjct: 187 INCFSVCSNMTDACRVFNESSVLDSVSWNSILAG-----------YIEIGNVEEAKHIYH 235

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BLAST of HG10011207 vs. NCBI nr
Match: XP_022934101.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 1.5e-92
Identity = 169/204 (82.84%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 178 MNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRD 237
           MN  R N  +SAFKSSLIHKPTFKPTIDLSILEFH+KQCQ+I QF+Q+LSQM+LTG +RD
Sbjct: 1   MNFFRSNLLASAFKSSLIHKPTFKPTIDLSILEFHMKQCQNIKQFDQVLSQMLLTGLIRD 60

Query: 238 TYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSM 297
           TYAASRLIK ST FPF+HIDYT RIFN IENTNCFMWNMMMRAYIQ + P FA +LYKSM
Sbjct: 61  TYAASRLIKFSTEFPFIHIDYTLRIFNLIENTNCFMWNMMMRAYIQRNSPHFALSLYKSM 120

Query: 298 LSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNM 357
           L +YL ADNYTYPLLIQACSIR+SEWE KQVHNHV+KLGFDSD+YVQNTLI+FFSVCSNM
Sbjct: 121 LFKYLEADNYTYPLLIQACSIRRSEWEGKQVHNHVMKLGFDSDVYVQNTLINFFSVCSNM 180

Query: 358 TDARRVFDESSVLDSVSWNSILAG 382
           +DARRVFDES+VLDSVSWNSILAG
Sbjct: 181 SDARRVFDESTVLDSVSWNSILAG 204

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BLAST of HG10011207 vs. ExPASy Swiss-Prot
Match: Q9SXJ6 (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-50
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 2   RFRMPNGRVIIHQPIGTAGGKATEMSILVREMVYQKIRLKKSFSRITGKPLEQIELDTDR 61
           R+ MPN +V+IHQP+GTAGGKATEMSI +REM+Y KI+L K FSRITGKP  +IE DTDR
Sbjct: 178 RYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDR 237

Query: 62  DNFMNPWEAKEYGLINEVIDDGKPGLIAPTAEATPPLKTRVWDLWKVEGSRKAKKNLPSE 121
           DNF+NPWEAKEYGLI+ VIDDGKPGLIAP  + TPP KT+VWDLWKVEG++K   NLPSE
Sbjct: 238 DNFLNPWEAKEYGLIDAVIDDGKPGLIAPIGDGTPPPKTKVWDLWKVEGTKKDNTNLPSE 297

Query: 122 NKILQNG 129
             + QNG
Sbjct: 298 RSMTQNG 304

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BLAST of HG10011207 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.7e-26
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 0


Query: 183 LNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRDTYAAS 242
           +N++S+   S ++H P       LS+LE    +C+ +    QI +QM++ G + D +A+S
Sbjct: 42  INWNST--HSFVLHNPL------LSLLE----KCKLLLHLKQIQAQMIINGLILDPFASS 101

Query: 243 RLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQ-- 302
           RLI         ++DY+ +I   IEN N F WN+ +R + +++ P  +F LYK ML    
Sbjct: 102 RLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGC 161

Query: 303 -YLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNMTD 362
                D++TYP+L + C+  +       +  HVLKL  +   +V N  IH F+ C +M +
Sbjct: 162 CESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMEN 221

Query: 363 ARRVFDESSVLDSVSWNSILAG 382
           AR+VFDES V D VSWN ++ G
Sbjct: 222 ARKVFDESPVRDLVSWNCLING 231

[Close]

BLAST of HG10011207 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-23
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 213 LKQCQHINQFNQILSQMVLTGFLRDTYAASRLIK---SSTHFPFVHIDYTWRIFNFIENT 272
           L++C    +  QI ++M+ TG ++D+YA ++ +    SST   F  + Y   +F+  +  
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF--LPYAQIVFDGFDRP 80

Query: 273 NCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVH 332
           + F+WN+M+R +  +D P+ +  LY+ ML      + YT+P L++ACS   +  E  Q+H
Sbjct: 81  DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 140

Query: 333 NHVLKLGFDSDIYVQNTLIHFFSVCSNMTDARRVFDESSVLDSVSWNSILAG 382
             + KLG+++D+Y  N+LI+ ++V  N   A  +FD     D VSWNS++ G
Sbjct: 141 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190

[Close]

BLAST of HG10011207 vs. ExPASy Swiss-Prot
Match: Q9LS72 (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.5e-23
Identity = 62/171 (36.26%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 213 LKQCQHINQFNQILSQMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCF 272
           L +C ++NQ  Q+ +Q++      D + A +LI + +     ++    R+FN ++  N  
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVH 85

Query: 273 MWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHV 332
           + N ++RA+ Q   P  AF ++  M    L ADN+TYP L++ACS +      K +HNH+
Sbjct: 86  LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHI 145

Query: 333 LKLGFDSDIYVQNTLIHFFSVCSNM--TDARRVFDESSVLDSVSWNSILAG 382
            KLG  SDIYV N LI  +S C  +   DA ++F++ S  D+VSWNS+L G
Sbjct: 146 EKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGG 194

[Close]

BLAST of HG10011207 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-21
Identity = 55/174 (31.61%), Postives = 95/174 (54.60%), Query Frame = 0


Query: 213 LKQCQHINQFNQILSQMVLTGFLRDTYAASRLI-----KSSTHFPFVHIDYTWRIFNFIE 272
           L+ C   +    I   ++ T  + D + ASRL+      S+ + P   + Y + IF+ I+
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78

Query: 273 NTNCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQ 332
           N N F++N+++R +     P  AF  Y  ML   +  DN T+P LI+A S  +     +Q
Sbjct: 79  NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138

Query: 333 VHNHVLKLGFDSDIYVQNTLIHFFSVCSNMTDARRVFDESSVLDSVSWNSILAG 382
            H+ +++ GF +D+YV+N+L+H ++ C  +  A R+F +    D VSW S++AG
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

[Close]

BLAST of HG10011207 vs. ExPASy TrEMBL
Match: A0A1S4E1G8 (pentatricopeptide repeat-containing protein At3g62890-like OS=Cucumis melo OX=3656 GN=LOC103496856 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 4.3e-101
Identity = 186/240 (77.50%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 168 QPWVFEGKSYMNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILS 227
           Q WV EGK Y+N L+ N+ S A  SSLIHKPTFKPTIDLSILEFHL +CQHINQFNQILS
Sbjct: 7   QRWVCEGKRYVNFLKSNHLSYARISSLIHKPTFKPTIDLSILEFHLNKCQHINQFNQILS 66

Query: 228 QMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLP 287
           QM+LTGF+R+TYAASRLIK STHFPF+HIDYT RIFNFIENTNCFMWNMM+RAYIQT+ P
Sbjct: 67  QMLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSP 126

Query: 288 DFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTL 347
            FAFTLYKSMLS YLGADNYTYPLLIQACSIR+SEWEAKQVHNHVLKLGFDSD+YV+NTL
Sbjct: 127 HFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 186

Query: 348 IHFFSVCSNMTDARRVFDESSVLDSVSWNSILAGEGEEFATLTSPYKDVKAIMECLKLYH 407
           I+ FSVCSNMTDARRVFDE+S+LDSVSWNSILAG           Y  +  + E   +YH
Sbjct: 187 INCFSVCSNMTDARRVFDENSILDSVSWNSILAG-----------YVQIGNVEEAKHIYH 235

[Close]

BLAST of HG10011207 vs. ExPASy TrEMBL
Match: A0A6J1F0X4 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441375 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 7.3e-93
Identity = 169/204 (82.84%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 178 MNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRD 237
           MN  R N  +SAFKSSLIHKPTFKPTIDLSILEFH+KQCQ+I QF+Q+LSQM+LTG +RD
Sbjct: 1   MNFFRSNLLASAFKSSLIHKPTFKPTIDLSILEFHMKQCQNIKQFDQVLSQMLLTGLIRD 60

Query: 238 TYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSM 297
           TYAASRLIK ST FPF+HIDYT RIFN IENTNCFMWNMMMRAYIQ + P FA +LYKSM
Sbjct: 61  TYAASRLIKFSTEFPFIHIDYTLRIFNLIENTNCFMWNMMMRAYIQRNSPHFALSLYKSM 120

Query: 298 LSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNM 357
           L +YL ADNYTYPLLIQACSIR+SEWE KQVHNHV+KLGFDSD+YVQNTLI+FFSVCSNM
Sbjct: 121 LFKYLEADNYTYPLLIQACSIRRSEWEGKQVHNHVMKLGFDSDVYVQNTLINFFSVCSNM 180

Query: 358 TDARRVFDESSVLDSVSWNSILAG 382
           +DARRVFDES+VLDSVSWNSILAG
Sbjct: 181 SDARRVFDESTVLDSVSWNSILAG 204

[Close]

BLAST of HG10011207 vs. ExPASy TrEMBL
Match: A0A6J1J842 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482218 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 8.9e-91
Identity = 168/204 (82.35%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 178 MNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRD 237
           MN  R N  +SAFKSSLIHKPTFKPTIDLSILEFH+KQCQ+I QF+Q+LSQM+LTG +RD
Sbjct: 1   MNFFRSNLLASAFKSSLIHKPTFKPTIDLSILEFHMKQCQNIKQFDQVLSQMLLTGLIRD 60

Query: 238 TYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSM 297
           TYAASRLIK ST FPF HIDYT RIFN IENTNCFMWNMMMRAYIQ + P FA  LYKSM
Sbjct: 61  TYAASRLIKFSTDFPFTHIDYTLRIFNLIENTNCFMWNMMMRAYIQRNSPHFALNLYKSM 120

Query: 298 LSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNM 357
           L +YL ADNYTYPLLIQACSIR+SE E KQVHNHV+KLGFDSD+YVQNTLI+FFSVCSNM
Sbjct: 121 LFKYLEADNYTYPLLIQACSIRRSEGEGKQVHNHVMKLGFDSDVYVQNTLINFFSVCSNM 180

Query: 358 TDARRVFDESSVLDSVSWNSILAG 382
           +DARRVFDESSVLDSVSWNSIL+G
Sbjct: 181 SDARRVFDESSVLDSVSWNSILSG 204

[Close]

BLAST of HG10011207 vs. ExPASy TrEMBL
Match: A0A6J1DFB5 (pentatricopeptide repeat-containing protein At3g62890 OS=Momordica charantia OX=3673 GN=LOC111019971 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 161/205 (78.54%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 178 MNLLRLN-YHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLR 237
           MN  RLN   SSAF+SSLIHKPT K TIDLSILEF L QC  I QFNQILSQM+LTGF+R
Sbjct: 1   MNFFRLNQLFSSAFRSSLIHKPTSKSTIDLSILEFRLNQCHDIKQFNQILSQMLLTGFIR 60

Query: 238 DTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKS 297
           DTYAASRLIK ST FPF+HIDYT RIFN +ENTNCFMWN+MMR YIQ + P F+  LYK 
Sbjct: 61  DTYAASRLIKFSTDFPFIHIDYTRRIFNCVENTNCFMWNVMMRTYIQRNSPHFSLGLYKL 120

Query: 298 MLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSN 357
           MLS+Y+G DNYTYP+++QACSIRQSE+E KQVHNH+LKLGFDSD+YVQNTLI+ FSVCSN
Sbjct: 121 MLSKYVGPDNYTYPIIVQACSIRQSEFEGKQVHNHILKLGFDSDVYVQNTLINLFSVCSN 180

Query: 358 MTDARRVFDESSVLDSVSWNSILAG 382
           MTDARR+FDESSVLDSVSWNSILAG
Sbjct: 181 MTDARRMFDESSVLDSVSWNSILAG 205

[Close]

BLAST of HG10011207 vs. ExPASy TrEMBL
Match: F6I4U4 (DYW_deaminase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00880 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-68
Identity = 129/204 (63.24%), Postives = 164/204 (80.39%), Query Frame = 0


Query: 178 MNLLRLNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRD 237
           M L +LN  SSA KS+  HKPTFKPTI LSILE HL  C ++ QFN+ILSQM+LTGF+ D
Sbjct: 1   MKLSKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISD 60

Query: 238 TYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSM 297
           T+AASRL+K ST  PF+ +DY+ +IF+ IEN+N FMWN MMRAYIQ++  + A  LYK M
Sbjct: 61  TFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLM 120

Query: 298 LSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNM 357
           +   +G DNYTYPL++QAC++R  E+  K++H+HVLK+GFDSD+YVQNTLI+ ++VC NM
Sbjct: 121 VKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNM 180

Query: 358 TDARRVFDESSVLDSVSWNSILAG 382
            DAR++FDES VLDSVSWNSILAG
Sbjct: 181 RDARKLFDESPVLDSVSWNSILAG 204

[Close]

BLAST of HG10011207 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-51
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 2   RFRMPNGRVIIHQPIGTAGGKATEMSILVREMVYQKIRLKKSFSRITGKPLEQIELDTDR 61
           R+ MPN +V+IHQP+GTAGGKATEMSI +REM+Y KI+L K FSRITGKP  +IE DTDR
Sbjct: 178 RYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDR 237

Query: 62  DNFMNPWEAKEYGLINEVIDDGKPGLIAPTAEATPPLKTRVWDLWKVEGSRKAKKNLPSE 121
           DNF+NPWEAKEYGLI+ VIDDGKPGLIAP  + TPP KT+VWDLWKVEG++K   NLPSE
Sbjct: 238 DNFLNPWEAKEYGLIDAVIDDGKPGLIAPIGDGTPPPKTKVWDLWKVEGTKKDNTNLPSE 297

Query: 122 NKILQNG 129
             + QNG
Sbjct: 298 RSMTQNG 304

[Close]

BLAST of HG10011207 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-27
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 0


Query: 183 LNYHSSAFKSSLIHKPTFKPTIDLSILEFHLKQCQHINQFNQILSQMVLTGFLRDTYAAS 242
           +N++S+   S ++H P       LS+LE    +C+ +    QI +QM++ G + D +A+S
Sbjct: 42  INWNST--HSFVLHNPL------LSLLE----KCKLLLHLKQIQAQMIINGLILDPFASS 101

Query: 243 RLIKSSTHFPFVHIDYTWRIFNFIENTNCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQ-- 302
           RLI         ++DY+ +I   IEN N F WN+ +R + +++ P  +F LYK ML    
Sbjct: 102 RLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGC 161

Query: 303 -YLGADNYTYPLLIQACSIRQSEWEAKQVHNHVLKLGFDSDIYVQNTLIHFFSVCSNMTD 362
                D++TYP+L + C+  +       +  HVLKL  +   +V N  IH F+ C +M +
Sbjct: 162 CESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMEN 221

Query: 363 ARRVFDESSVLDSVSWNSILAG 382
           AR+VFDES V D VSWN ++ G
Sbjct: 222 ARKVFDESPVRDLVSWNCLING 231

[Close]

BLAST of HG10011207 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-24
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 213 LKQCQHINQFNQILSQMVLTGFLRDTYAASRLIK---SSTHFPFVHIDYTWRIFNFIENT 272
           L++C    +  QI ++M+ TG ++D+YA ++ +    SST   F  + Y   +F+  +  
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF--LPYAQIVFDGFDRP 80

Query: 273 NCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVH 332
           + F+WN+M+R +  +D P+ +  LY+ ML      + YT+P L++ACS   +  E  Q+H
Sbjct: 81  DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 140

Query: 333 NHVLKLGFDSDIYVQNTLIHFFSVCSNMTDARRVFDESSVLDSVSWNSILAG 382
             + KLG+++D+Y  N+LI+ ++V  N   A  +FD     D VSWNS++ G
Sbjct: 141 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190

[Close]

BLAST of HG10011207 vs. TAIR 10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-24
Identity = 62/171 (36.26%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 213 LKQCQHINQFNQILSQMVLTGFLRDTYAASRLIKSSTHFPFVHIDYTWRIFNFIENTNCF 272
           L +C ++NQ  Q+ +Q++      D + A +LI + +     ++    R+FN ++  N  
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVH 85

Query: 273 MWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQVHNHV 332
           + N ++RA+ Q   P  AF ++  M    L ADN+TYP L++ACS +      K +HNH+
Sbjct: 86  LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHI 145

Query: 333 LKLGFDSDIYVQNTLIHFFSVCSNM--TDARRVFDESSVLDSVSWNSILAG 382
            KLG  SDIYV N LI  +S C  +   DA ++F++ S  D+VSWNS+L G
Sbjct: 146 EKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGG 194

[Close]

BLAST of HG10011207 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 7.9e-23
Identity = 55/174 (31.61%), Postives = 95/174 (54.60%), Query Frame = 0


Query: 213 LKQCQHINQFNQILSQMVLTGFLRDTYAASRLI-----KSSTHFPFVHIDYTWRIFNFIE 272
           L+ C   +    I   ++ T  + D + ASRL+      S+ + P   + Y + IF+ I+
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78

Query: 273 NTNCFMWNMMMRAYIQTDLPDFAFTLYKSMLSQYLGADNYTYPLLIQACSIRQSEWEAKQ 332
           N N F++N+++R +     P  AF  Y  ML   +  DN T+P LI+A S  +     +Q
Sbjct: 79  NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138

Query: 333 VHNHVLKLGFDSDIYVQNTLIHFFSVCSNMTDARRVFDESSVLDSVSWNSILAG 382
            H+ +++ GF +D+YV+N+L+H ++ C  +  A R+F +    D VSW S++AG
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

The following BLAST results are available for this feature:

BLAST of HG10011207 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904486.1	9.8e-108	88.74	pentatricopeptide repeat-containing protein At3g62890-like isoform X1 [Benincasa...	[more]
XP_016902068.1	8.8e-101	77.50	PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis m...	[more]
XP_011651205.1	3.7e-99	77.08	pentatricopeptide repeat-containing protein At3g62890 isoform X1 [Cucumis sativu...	[more]
XP_031738844.1	3.7e-99	77.08	pentatricopeptide repeat-containing protein At5g66520 isoform X2 [Cucumis sativu...	[more]
XP_022934101.1	1.5e-92	82.84	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucur...	[more]

BLAST of HG10011207 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SXJ6	1.9e-50	72.44	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis t...	[more]
Q9SJZ3	5.7e-26	35.15	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
Q9FJY7	3.5e-23	33.14	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
Q9LS72	4.5e-23	36.26	Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX...	[more]
Q9FG16	1.1e-21	31.61	Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10011207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1G8	4.3e-101	77.50	pentatricopeptide repeat-containing protein At3g62890-like OS=Cucumis melo OX=36...	[more]
A0A6J1F0X4	7.3e-93	82.84	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc...	[more]
A0A6J1J842	8.9e-91	82.35	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc...	[more]
A0A6J1DFB5	3.0e-86	78.54	pentatricopeptide repeat-containing protein At3g62890 OS=Momordica charantia OX=...	[more]
F6I4U4	2.1e-68	63.24	DYW_deaminase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s006...	[more]

BLAST of HG10011207 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66670.1	1.4e-51	72.44	CLP protease proteolytic subunit 3	[more]
AT2G22410.1	4.0e-27	35.15	SLOW GROWTH 1	[more]
AT5G66520.1	2.5e-24	33.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G29230.1	3.2e-24	36.26	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G06540.1	7.9e-23	31.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 1..17 score: 40.5 coord: 58..77 score: 53.12
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 1..79 e-value: 1.32922E-28 score: 108.298
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 272..299 e-value: 7.5E-4 score: 19.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 273..299 e-value: 6.2E-4 score: 17.8
None	No IPR available	GENE3D	3.90.226.10		coord: 1..84 e-value: 1.2E-18 score: 69.3
None	No IPR available	PANTHER	PTHR10381:SF50	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 3, CHLOROPLASTIC	coord: 2..127
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 179..321 e-value: 7.3E-10 score: 40.5 coord: 322..404 e-value: 1.1E-5 score: 26.8
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 1..81 e-value: 3.0E-22 score: 79.4
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 2..127
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 2..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011207.1	HG10011207.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding