HG10010911 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010911
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
LocationChr01: 260038 .. 260424 (-)
RNA-Seq ExpressionHG10010911
SyntenyHG10010911
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCAGAGGATCTAATAGAAGACTGGAAGAAATTACAGCTTTCGGAAGAGGAAAAGGAAATAAAAGTTGGTAGAGATCCATCGCTAATTACTCAAATTCACGGTCAACTAGACCATTGCCTGGTGGGGAAGTTATTAACCACTCGAACTATTTCTCCTGTGATCATAAGGAATACCTTCGCAAATGCTTGGATAACAACTTTGGGTTTTAGCGTGGAAAGTCTGGGAAAAAATCTTTTTCTTTTCAAGTTTGATGCCCGCAGGGATAAAGAGTTGGTCTTATGGCTGGGTCCTTGGATCTTTGATAATTCTTTACTAGCTTTAGAAGTCTCTCGAGACAATAAAAGATTATCCCAACTTTCCTTTGATAAAGCTGCTTTTTAG

mRNA sequence

ATGGAACCAGAGGATCTAATAGAAGACTGGAAGAAATTACAGCTTTCGGAAGAGGAAAAGGAAATAAAAGTTGGTAGAGATCCATCGCTAATTACTCAAATTCACGGTCAACTAGACCATTGCCTGGTGGGGAAGTTATTAACCACTCGAACTATTTCTCCTGTGATCATAAGGAATACCTTCGCAAATGCTTGGATAACAACTTTGGGTTTTAGCGTGGAAAGTCTGGGAAAAAATCTTTTTCTTTTCAAGTTTGATGCCCGCAGGGATAAAGAGTTGGTCTTATGGCTGGGTCCTTGGATCTTTGATAATTCTTTACTAGCTTTAGAAGTCTCTCGAGACAATAAAAGATTATCCCAACTTTCCTTTGATAAAGCTGCTTTTTAG

Coding sequence (CDS)

ATGGAACCAGAGGATCTAATAGAAGACTGGAAGAAATTACAGCTTTCGGAAGAGGAAAAGGAAATAAAAGTTGGTAGAGATCCATCGCTAATTACTCAAATTCACGGTCAACTAGACCATTGCCTGGTGGGGAAGTTATTAACCACTCGAACTATTTCTCCTGTGATCATAAGGAATACCTTCGCAAATGCTTGGATAACAACTTTGGGTTTTAGCGTGGAAAGTCTGGGAAAAAATCTTTTTCTTTTCAAGTTTGATGCCCGCAGGGATAAAGAGTTGGTCTTATGGCTGGGTCCTTGGATCTTTGATAATTCTTTACTAGCTTTAGAAGTCTCTCGAGACAATAAAAGATTATCCCAACTTTCCTTTGATAAAGCTGCTTTTTAG

Protein sequence

MEPEDLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNTFANAWITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQLSFDKAAF
Homology
BLAST of HG10010911 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-16
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 0

Query: 1   MEPEDLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNT 60
           M+ E+L+ DW+K +L+ EE EI +  D   +      L + LVGKLL  R IS  ++   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  FANAWITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQ 120
              AW      +VES+GKNLFLF F    D   V+  GPW FD +L+ L+    +K +S+
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 LSFDKAAF 129
           L F++ AF
Sbjct: 121 LEFNRVAF 128

BLAST of HG10010911 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 6.9e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 5   DLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNTFANA 64
           DL+E+WK  +L+ EE+E  +  D S       +L+  LVGKL   R I+  +++NT   A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 65  W-ITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQLSF 124
           W +    F V+SLG NLFLF F    D+  +   GPW FD +L+ +         S+L F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 125 DK 126
            K
Sbjct: 125 TK 126

BLAST of HG10010911 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 1   MEPEDLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNT 60
           M   +L+E+WK  +L+ EE +I V  D S +      L+  L+ KLL+ R+IS  +++NT
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  FANAW-ITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALE 111
              AW +    FSV+ +G N+FLF F+   D+  +L +GPW FD +L+ ++
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIID 111

BLAST of HG10010911 vs. NCBI nr
Match: XP_006485824.1 (uncharacterized protein LOC102613298 [Citrus sinensis])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-11
Identity = 46/112 (41.07%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 1   MEPEDLIEDWKKLQL-SEEEKEIKVGRDPSLITQIHGQ--LDHCLVGKLLTTRTISPVII 60
           M+ E+LI   + + L SEE+  I  GR+     ++ G+  + HCLVGK+L TR++    +
Sbjct: 1   MDAEELIRKCEAITLQSEEDNMISFGRN----MKVRGERLVAHCLVGKILQTRSVPREGL 60

Query: 61  RNTFANAWITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLAL 110
           R     AW TT    VESLG N+FLFKF ++ +K+ +L+ GPW FD SL+ +
Sbjct: 61  RAAMQQAWRTTKETKVESLGDNIFLFKFASKSEKKRILFGGPWHFDRSLMVV 108

BLAST of HG10010911 vs. NCBI nr
Match: XP_015388532.1 (uncharacterized protein LOC107178176 [Citrus sinensis])

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-11
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 1   MEPEDLIEDWKKLQL-SEEEKEIKVGRDPSLITQIHGQ--LDHCLVGKLLTTRTISPVII 60
           M+ E+LI   + + L SEE+  I  GR+     ++ G+  + HCLVGK+L TR++    +
Sbjct: 1   MDAEELIRKCEAITLQSEEDNMISFGRN----MKVRGERLVAHCLVGKILQTRSVPREGL 60

Query: 61  RNTFANAWITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLAL 110
           R     AW TT    VESLG N+F+FKF ++ +K+ +L+ GPW FD SL+ +
Sbjct: 61  RAAMQQAWRTTKETKVESLGDNIFIFKFASKSEKKRILFGGPWHFDRSLMVV 108

BLAST of HG10010911 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 0

Query: 1   MEPEDLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNT 60
           M+ E+L+ DW+K +L+ EE EI +  D   +      L + LVGKLL  R IS  ++   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  FANAWITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQ 120
              AW      +VES+GKNLFLF F    D   V+  GPW FD +L+ L+    +K +S+
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 LSFDKAAF 129
           L F++ AF
Sbjct: 121 LEFNRVAF 128

BLAST of HG10010911 vs. ExPASy TrEMBL
Match: A0A2N9F689 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10176 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 11  KKLQLSEEEKE-IKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNTFANAW--IT 70
           KKL L+E E E IK+  +    +Q  G+   CL+ KLLT R  +   +++T  N W  +T
Sbjct: 10  KKLSLTESENEDIKIQEESFKNSQ--GKTKFCLLAKLLTQRPFNKGTLKSTMTNLWKPMT 69

Query: 71  TLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQLSFDKAA 129
           T G     +G NLFLF+F  + DKE VL   PW FD  LL L+    + +L+ +S D+A 
Sbjct: 70  TRGVKARDIGDNLFLFEFHDQYDKETVLIASPWCFDRQLLVLKDFNGDSQLANISLDEAL 128

BLAST of HG10010911 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.3e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 5   DLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNTFANA 64
           DL+E+WK  +L+ EE+E  +  D S       +L+  LVGKL   R I+  +++NT   A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 65  W-ITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQLSF 124
           W +    F V+SLG NLFLF F    D+  +   GPW FD +L+ +         S+L F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 125 DK 126
            K
Sbjct: 125 TK 126

BLAST of HG10010911 vs. ExPASy TrEMBL
Match: A0A2N9FJK9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14993 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.3e-12
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0

Query: 4   EDLIEDWKKLQLSEEEKE-IKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNTFA 63
           ++L+EDW++  L+E+E     +  +    +++ G   HCL+GKLLT +  +   ++ T  
Sbjct: 3   DELVEDWRRFSLTEDEAPGFIIAEEAMGDSEVIG--SHCLLGKLLTAKFCNKAALKATML 62

Query: 64  NAWITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALEVSRDNKRLSQLS 123
             W    G   + +G+NLFLF+F    D + VL   PW+FDN+LL L V   +   +Q+S
Sbjct: 63  RIWGAASGVVAQDMGRNLFLFQFQNDADCKRVLHGSPWLFDNNLLVLNVFDGSCPANQIS 122

Query: 124 FDKAAF 129
           F+   F
Sbjct: 123 FNHCCF 126

BLAST of HG10010911 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.7e-12
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 1   MEPEDLIEDWKKLQLSEEEKEIKVGRDPSLITQIHGQLDHCLVGKLLTTRTISPVIIRNT 60
           M   +L+E+WK  +L+ EE +I V  D S +      L+  L+ KLL+ R+IS  +++NT
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  FANAW-ITTLGFSVESLGKNLFLFKFDARRDKELVLWLGPWIFDNSLLALE 111
              AW +    FSV+ +G N+FLF F+   D+  +L +GPW FD +L+ ++
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIID 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.12.7e-1639.06uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022158377.16.9e-1236.89uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022132681.11.2e-1136.94uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_006485824.12.0e-1141.07uncharacterized protein LOC102613298 [Citrus sinensis][more]
XP_015388532.13.4e-1140.18uncharacterized protein LOC107178176 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU551.3e-1639.06uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A2N9F6891.5e-1239.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10176 PE=4 SV=1[more]
A0A6J1DX303.3e-1236.89uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9FJK93.3e-1233.33CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1499... [more]
A0A6J1BSZ15.7e-1236.94uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 35..111
e-value: 2.2E-11
score: 43.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010911.1HG10010911.1mRNA