HG10009099 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009099
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	heavy metal-associated isoprenylated plant protein 3
Location	Chr06: 2485734 .. 2486009 (-)
RNA-Seq Expression	HG10009099
Synteny	HG10009099

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAATTGAATCAATTGCCATGGACATGAAAGATAAAAAGTTGACAGTGATTGGAGATGTAGACCCTATTGATGTTGTTGCTAAGGTTCGAAAGCATTGGCCGAACGCCGACATCGTCAGCATTGGCCCGGCAAAGGAAGATAAGAAGGACCAAAATGAAAAGATGGACGAGCAACTTAAATTGTACAAAGGCTATGATCATCAAGATTATGCCCTTAATTATGATGTGTATAGTGAAGAGGAGAGTCAAAACTCTTGTGTCATAAGTTAG

mRNA sequence

ATGGCAAGAATTGAATCAATTGCCATGGACATGAAAGATAAAAAGTTGACAGTGATTGGAGATGTAGACCCTATTGATGTTGTTGCTAAGGTTCGAAAGCATTGGCCGAACGCCGACATCGTCAGCATTGGCCCGGCAAAGGAAGATAAGAAGGACCAAAATGAAAAGATGGACGAGCAACTTAAATTGTACAAAGGCTATGATCATCAAGATTATGCCCTTAATTATGATGTGTATAGTGAAGAGGAGAGTCAAAACTCTTGTGTCATAAGTTAG

Coding sequence (CDS)

ATGGCAAGAATTGAATCAATTGCCATGGACATGAAAGATAAAAAGTTGACAGTGATTGGAGATGTAGACCCTATTGATGTTGTTGCTAAGGTTCGAAAGCATTGGCCGAACGCCGACATCGTCAGCATTGGCCCGGCAAAGGAAGATAAGAAGGACCAAAATGAAAAGATGGACGAGCAACTTAAATTGTACAAAGGCTATGATCATCAAGATTATGCCCTTAATTATGATGTGTATAGTGAAGAGGAGAGTCAAAACTCTTGTGTCATAAGTTAG

Protein sequence

MARIESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQNEKMDEQLKLYKGYDHQDYALNYDVYSEEESQNSCVIS

Homology

[Close]

BLAST of HG10009099 vs. NCBI nr
Match: XP_038875364.1 (heavy metal-associated isoprenylated plant protein 39-like [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 9.5e-32
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKD----QNEKMDE 63
           IESIAMDMKDKKLTVIGDVDP+DV+ K+RKHWPNAD+VSIGPAKE+KK+    QNEKM+E
Sbjct: 29  IESIAMDMKDKKLTVIGDVDPVDVITKIRKHWPNADVVSIGPAKEEKKEELKNQNEKMEE 88

Query: 64  QLKLYKGYDHQDYALNYDVYSEEESQNSCVIS 92
            LKLYK YDH  YA NYDVY EEE+ NSCVIS
Sbjct: 89  LLKLYKNYDHHSYAHNYDVYGEEENPNSCVIS 120

[Close]

BLAST of HG10009099 vs. NCBI nr
Match: XP_008437332.1 (PREDICTED: heavy metal-associated isoprenylated plant protein 3 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-26
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ------NEKM 63
           IE IAMDMKDKKLTVIGDVDP+DVVAKVRKHWP+ADIVSIGPAKE+KK +      ++KM
Sbjct: 29  IELIAMDMKDKKLTVIGDVDPVDVVAKVRKHWPDADIVSIGPAKEEKKKEEQKNQNDQKM 88

Query: 64  DEQLKLYKGYDHQ-DYALNYDVYS-EEESQNSCVIS 92
           +E LKLYK YDHQ  +A+NYD+Y  EE S N CVIS
Sbjct: 89  EELLKLYKSYDHQHGFAVNYDLYGVEENSNNPCVIS 124

[Close]

BLAST of HG10009099 vs. NCBI nr
Match: XP_004143971.1 (heavy metal-associated isoprenylated plant protein 39 [Cucumis sativus] >KGN50061.1 hypothetical protein Csa_000154 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-26
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ------NEKM 63
           IE IAMDMKDKKLTVIGDVDP+DVV KVRKHWP+ADIVSIGPAKE+KK++      ++KM
Sbjct: 29  IELIAMDMKDKKLTVIGDVDPVDVVGKVRKHWPDADIVSIGPAKEEKKEEQKNQNNDQKM 88

Query: 64  DEQLKLYKGYD-HQDYALNYDVYSE--EESQNSCVIS 92
           +E LKLYK YD H   A+NYDVYS+  EE+ NSCVIS
Sbjct: 89  EELLKLYKSYDNHHASAVNYDVYSDHLEENSNSCVIS 125

[Close]

BLAST of HG10009099 vs. NCBI nr
Match: KAA0042724.1 (heavy metal-associated isoprenylated plant protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 7.3e-24
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 9  MDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ------NEKMDEQLK 68
          MDMKDKKLTVIGDVDP+DVVAKVRKHWP+ADIVSIGPAKE+KK +      ++KM+E LK
Sbjct: 1  MDMKDKKLTVIGDVDPVDVVAKVRKHWPDADIVSIGPAKEEKKKEEQKNQNDQKMEELLK 60

Query: 69 LYKGYDHQ-DYALNYDVYS-EEESQNSCVIS 92
          LYK YDHQ  +A+NYD+Y  EE S N C IS
Sbjct: 61 LYKSYDHQHGFAVNYDLYGVEENSNNPCAIS 91

[Close]

BLAST of HG10009099 vs. NCBI nr
Match: XP_004143886.1 (heavy metal-associated isoprenylated plant protein 39 isoform X1 [Cucumis sativus] >KGN50060.1 hypothetical protein Csa_000088 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 4.0e-22
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDK-----------KD 63
           IESIAMDMKDKKLTVIGDVDP+DV  KVRKHWPNADI+S+GPAKE+K           K 
Sbjct: 29  IESIAMDMKDKKLTVIGDVDPVDVADKVRKHWPNADIISVGPAKEEKAAPPKVTKPKEKS 88

Query: 64  QNEKMDEQLKLYKGYDHQDY-ALNYDVYSEEESQNSCVIS 92
           ++EK+++ L  YK + H  Y A NY VY  EE+ NSCVIS
Sbjct: 89  ESEKIEDLLNWYKSHGHIQYGAPNYRVYGIEENPNSCVIS 128

[Close]

BLAST of HG10009099 vs. ExPASy Swiss-Prot
Match: O03982 (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 4  IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQNEK 57
          I+SIAMDMK+KKLTVIG VDP++VV+K+RK+WP  DIV +GPAKE +K++ E+
Sbjct: 29 IDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEE 81

[Close]

BLAST of HG10009099 vs. ExPASy TrEMBL
Match: A0A1S3ATW9 (heavy metal-associated isoprenylated plant protein 3 OS=Cucumis melo OX=3656 GN=LOC103482784 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ------NEKM 63
           IE IAMDMKDKKLTVIGDVDP+DVVAKVRKHWP+ADIVSIGPAKE+KK +      ++KM
Sbjct: 29  IELIAMDMKDKKLTVIGDVDPVDVVAKVRKHWPDADIVSIGPAKEEKKKEEQKNQNDQKM 88

Query: 64  DEQLKLYKGYDHQ-DYALNYDVYS-EEESQNSCVIS 92
           +E LKLYK YDHQ  +A+NYD+Y  EE S N CVIS
Sbjct: 89  EELLKLYKSYDHQHGFAVNYDLYGVEENSNNPCVIS 124

[Close]

BLAST of HG10009099 vs. ExPASy TrEMBL
Match: A0A0A0KQU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152260 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ------NEKM 63
           IE IAMDMKDKKLTVIGDVDP+DVV KVRKHWP+ADIVSIGPAKE+KK++      ++KM
Sbjct: 29  IELIAMDMKDKKLTVIGDVDPVDVVGKVRKHWPDADIVSIGPAKEEKKEEQKNQNNDQKM 88

Query: 64  DEQLKLYKGYD-HQDYALNYDVYSE--EESQNSCVIS 92
           +E LKLYK YD H   A+NYDVYS+  EE+ NSCVIS
Sbjct: 89  EELLKLYKSYDNHHASAVNYDVYSDHLEENSNSCVIS 125

[Close]

BLAST of HG10009099 vs. ExPASy TrEMBL
Match: A0A5A7THB2 (Heavy metal-associated isoprenylated plant protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002230 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-24
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 9  MDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ------NEKMDEQLK 68
          MDMKDKKLTVIGDVDP+DVVAKVRKHWP+ADIVSIGPAKE+KK +      ++KM+E LK
Sbjct: 1  MDMKDKKLTVIGDVDPVDVVAKVRKHWPDADIVSIGPAKEEKKKEEQKNQNDQKMEELLK 60

Query: 69 LYKGYDHQ-DYALNYDVYS-EEESQNSCVIS 92
          LYK YDHQ  +A+NYD+Y  EE S N C IS
Sbjct: 61 LYKSYDHQHGFAVNYDLYGVEENSNNPCAIS 91

[Close]

BLAST of HG10009099 vs. ExPASy TrEMBL
Match: A0A0A0KK61 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152250 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDK-----------KD 63
           IESIAMDMKDKKLTVIGDVDP+DV  KVRKHWPNADI+S+GPAKE+K           K 
Sbjct: 29  IESIAMDMKDKKLTVIGDVDPVDVADKVRKHWPNADIISVGPAKEEKAAPPKVTKPKEKS 88

Query: 64  QNEKMDEQLKLYKGYDHQDY-ALNYDVYSEEESQNSCVIS 92
           ++EK+++ L  YK + H  Y A NY VY  EE+ NSCVIS
Sbjct: 89  ESEKIEDLLNWYKSHGHIQYGAPNYRVYGIEENPNSCVIS 128

[Close]

BLAST of HG10009099 vs. ExPASy TrEMBL
Match: A0A5A7THG6 (Heavy metal-associated isoprenylated plant protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002220 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 4   IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDK-----------KD 63
           IESIAMDMKDKKLTVIGDVDP+DVV KVRKHW NADIVS+GPAKE+K           K 
Sbjct: 29  IESIAMDMKDKKLTVIGDVDPVDVVEKVRKHWRNADIVSVGPAKEEKKAPPKETKPKEKS 88

Query: 64  QNEKMDEQLKLYKGYDHQDY--ALNYDVYSEEESQNSCVIS 92
           ++EK+++ L  YK + +  Y  A NY VYS EE+ NSCVIS
Sbjct: 89  ESEKLEDLLIWYKSHGYIPYGSAPNYRVYSVEENPNSCVIS 129

[Close]

BLAST of HG10009099 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-14
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 4  IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQNEK 57
          I+SIAMDMK+KKLTVIG VDP++VV+K+RK+WP  DIV +GPAKE +K++ E+
Sbjct: 29 IDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEE 81

[Close]

BLAST of HG10009099 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-14
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 4  IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQNEK 57
          I+SIAMDMK+KKLTVIG VDP++VV+K+RK+WP  DIV +GPAKE +K++ E+
Sbjct: 29 IDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEE 81

[Close]

BLAST of HG10009099 vs. TAIR 10
Match: AT5G23760.1 (Copper transport protein family )

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-08
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 4  IESIAMDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGPAKEDKKDQ--NEKMDEQ 61
          ++SIA DMKD+KLTVIG +D + VV K++K     D++S+GPAKE+KK++   EK +E+
Sbjct: 31 VDSIAADMKDQKLTVIGLMDAVAVVKKLKK-VGKVDLISVGPAKEEKKEEKKEEKKEEK 88

[Close]

BLAST of HG10009099 vs. TAIR 10
Match: AT1G63960.1 (Copper transport protein family )

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-05
Identity = 26/78 (33.33%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 9  MDMKDKKLTVIGDVDPIDVVAKVRKHWPNADIVSIGP------------AKEDKKDQNEK 68
          MD K+ KLTVIG+ D + ++ K++K W +A + + GP            A++ KK++NE+
Sbjct: 1  MDSKEGKLTVIGEFDEMQILKKLKKRWESAKMATFGPFDPKKEAETAAAAEKKKKEENER 60

Query: 69 MDEQLK---LYKGYDHQD 72
            E+ +   LY+   H D
Sbjct: 61 EREREREEALYRSQSHHD 78

The following BLAST results are available for this feature:

BLAST of HG10009099 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875364.1	9.5e-32	78.26	heavy metal-associated isoprenylated plant protein 39-like [Benincasa hispida]	[more]
XP_008437332.1	4.5e-26	71.88	PREDICTED: heavy metal-associated isoprenylated plant protein 3 [Cucumis melo]	[more]
XP_004143971.1	7.7e-26	71.13	heavy metal-associated isoprenylated plant protein 39 [Cucumis sativus] >KGN5006...	[more]
KAA0042724.1	7.3e-24	70.33	heavy metal-associated isoprenylated plant protein 3 [Cucumis melo var. makuwa]	[more]
XP_004143886.1	4.0e-22	62.00	heavy metal-associated isoprenylated plant protein 39 isoform X1 [Cucumis sativu...	[more]

BLAST of HG10009099 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O03982	1.6e-13	66.04	Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10009099 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3ATW9	2.2e-26	71.88	heavy metal-associated isoprenylated plant protein 3 OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KQU3	3.8e-26	71.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152260 PE=4 SV=1	[more]
A0A5A7THB2	3.5e-24	70.33	Heavy metal-associated isoprenylated plant protein 3 OS=Cucumis melo var. makuwa...	[more]
A0A0A0KK61	1.9e-22	62.00	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152250 PE=4 SV...	[more]
A0A5A7THG6	1.6e-21	62.38	Heavy metal-associated isoprenylated plant protein 3-like OS=Cucumis melo var. m...	[more]

BLAST of HG10009099 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01490.1	1.1e-14	66.04	Heavy metal transport/detoxification superfamily protein	[more]
AT1G01490.2	1.1e-14	66.04	Heavy metal transport/detoxification superfamily protein	[more]
AT5G23760.1	4.6e-08	50.85	Copper transport protein family	[more]
AT1G63960.1	2.8e-05	33.33	Copper transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 1..49 e-value: 7.5E-13 score: 50.4
None	No IPR available	PANTHER	PTHR45811:SF49	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 4..90
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009099.1	HG10009099.1	mRNA