HG10008708 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008708
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Amine oxidase
Location	Chr10: 25466674 .. 25467030 (-)
RNA-Seq Expression	HG10008708
Synteny	HG10008708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCAACTTCGAAAAAAGCGACGTTCTTTTCAAGTGATGCTTGTTGTCATGCCACTGCTGCCGGTTCCACTACCGTTCCTCGAGAAGCTGCGCCTGTTGCTTCCGCCAATGTCGTCCAAGATTGGAATCTCACCACGAACGATCGCGCCGACGATCGCCGTACATCCAAGAATGTTGCCATCCCGTCGTTAGTTCGTTCTGTCGAACCGATTCCTGAACCTTCAACTAATGCTTCTTCCAAAGGCACTTTCCTTCTTCCCTCTTCTCTTTTTTTTCTTCTTCTTTCGTTTATCTCTCTAATCGATGACCTGGAATCTAGACATAAAGCTGTGCTTGATATTGACGTTCTATGA

mRNA sequence

ATGGCCCCAACTTCGAAAAAAGCGACGTTCTTTTCAAGTGATGCTTGTTGTCATGCCACTGCTGCCGGTTCCACTACCGTTCCTCGAGAAGCTGCGCCTGTTGCTTCCGCCAATGTCGTCCAAGATTGGAATCTCACCACGAACGATCGCGCCGACGATCGCCGTACATCCAAGAATGTTGCCATCCCGTCGTTAGTTCGTTCTGTCGAACCGATTCCTGAACCTTCAACTAATGCTTCTTCCAAAGGCACTTTCCTTCTTCCCTCTTCTCTTTTTTTTCTTCTTCTTTCGTTTATCTCTCTAATCGATGACCTGGAATCTAGACATAAAGCTGTGCTTGATATTGACGTTCTATGA

Coding sequence (CDS)

ATGGCCCCAACTTCGAAAAAAGCGACGTTCTTTTCAAGTGATGCTTGTTGTCATGCCACTGCTGCCGGTTCCACTACCGTTCCTCGAGAAGCTGCGCCTGTTGCTTCCGCCAATGTCGTCCAAGATTGGAATCTCACCACGAACGATCGCGCCGACGATCGCCGTACATCCAAGAATGTTGCCATCCCGTCGTTAGTTCGTTCTGTCGAACCGATTCCTGAACCTTCAACTAATGCTTCTTCCAAAGGCACTTTCCTTCTTCCCTCTTCTCTTTTTTTTCTTCTTCTTTCGTTTATCTCTCTAATCGATGACCTGGAATCTAGACATAAAGCTGTGCTTGATATTGACGTTCTATGA

Protein sequence

MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNVAIPSLVRSVEPIPEPSTNASSKGTFLLPSSLFFLLLSFISLIDDLESRHKAVLDIDVL

Homology

[Close]

BLAST of HG10008708 vs. NCBI nr
Match: KAG7023101.1 (hypothetical protein SDJN02_14125, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 98/119 (82.35%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
           MAPTSK+AT FSSDACCHAT AGST++PREAAPVASAN VQDWNL++ DRADDRRT KNV
Sbjct: 1   MAPTSKEAT-FSSDACCHATGAGSTSLPREAAPVASANAVQDWNLSSTDRADDRRT-KNV 60

Query: 61  AIPSLVRSVEPIPEPSTNASSKGTFLLPSSL-FFLLLSFISLIDDLESRHKAVLDIDVL 119
           A+PSLVR V+ IPEPSTNASSKGTF LPS L FF  LS ISLIDDLESR KAVLDIDVL
Sbjct: 61  AMPSLVRPVDEIPEPSTNASSKGTFPLPSLLIFFFRLSLISLIDDLESRFKAVLDIDVL 117

[Close]

BLAST of HG10008708 vs. NCBI nr
Match: XP_038879175.1 (copper methylamine oxidase isoform X1 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MAPTSKKAT FS+DACCHA AAGS +VPREAAPVASANVVQDWNLTTNDRADDRRTSKN+
Sbjct: 1  MAPTSKKATLFSTDACCHAAAAGSISVPREAAPVASANVVQDWNLTTNDRADDRRTSKNL 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          AIPSLVR+VEPIPEPSTNASSKG
Sbjct: 61 AIPSLVRAVEPIPEPSTNASSKG 83

[Close]

BLAST of HG10008708 vs. NCBI nr
Match: XP_004138093.2 (uncharacterized protein LOC101204200 isoform X1 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MAP SKKAT FSSD CCH++AAGSTTVPREAA VASANVVQDWNLTTNDRADDRRTSKNV
Sbjct: 1  MAPASKKATLFSSDVCCHSSAAGSTTVPREAASVASANVVQDWNLTTNDRADDRRTSKNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          AIPSLVRSVEPIPEPSTNASSKG
Sbjct: 61 AIPSLVRSVEPIPEPSTNASSKG 83

[Close]

BLAST of HG10008708 vs. NCBI nr
Match: XP_008464519.1 (PREDICTED: copper methylamine oxidase isoform X1 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 4.2e-32
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MA  SKK T FSSD CCH+TAAGSTTVPREAA VASANVVQDWNLTTNDRADDRRTSKNV
Sbjct: 1  MASASKKTTLFSSDVCCHSTAAGSTTVPREAASVASANVVQDWNLTTNDRADDRRTSKNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          AIPSLVRSVEPIPEPSTNASSKG
Sbjct: 61 AIPSLVRSVEPIPEPSTNASSKG 83

[Close]

BLAST of HG10008708 vs. NCBI nr
Match: XP_022921859.1 (uncharacterized protein LOC111429999 [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MAPTSK+AT FSSDACCHAT AGST++PREAAPVASAN VQDWNL++NDRADDRRT KNV
Sbjct: 1  MAPTSKEAT-FSSDACCHATGAGSTSLPREAAPVASANAVQDWNLSSNDRADDRRT-KNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          A+PSLVR V+ IPEPSTNASSKG
Sbjct: 61 AMPSLVRPVDEIPEPSTNASSKG 81

[Close]

BLAST of HG10008708 vs. ExPASy TrEMBL
Match: A0A0A0LRE3 (Amine oxidase OS=Cucumis sativus OX=3659 GN=Csa_1G004100 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.4e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MAP SKKAT FSSD CCH++AAGSTTVPREAA VASANVVQDWNLTTNDRADDRRTSKNV
Sbjct: 1  MAPASKKATLFSSDVCCHSSAAGSTTVPREAASVASANVVQDWNLTTNDRADDRRTSKNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          AIPSLVRSVEPIPEPSTNASSKG
Sbjct: 61 AIPSLVRSVEPIPEPSTNASSKG 83

[Close]

BLAST of HG10008708 vs. ExPASy TrEMBL
Match: A0A1S3CM55 (Amine oxidase OS=Cucumis melo OX=3656 GN=LOC103502378 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.0e-32
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MA  SKK T FSSD CCH+TAAGSTTVPREAA VASANVVQDWNLTTNDRADDRRTSKNV
Sbjct: 1  MASASKKTTLFSSDVCCHSTAAGSTTVPREAASVASANVVQDWNLTTNDRADDRRTSKNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          AIPSLVRSVEPIPEPSTNASSKG
Sbjct: 61 AIPSLVRSVEPIPEPSTNASSKG 83

[Close]

BLAST of HG10008708 vs. ExPASy TrEMBL
Match: A0A6J1JHS4 (Amine oxidase OS=Cucurbita maxima OX=3661 GN=LOC111485824 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MAPTSK+AT FSSDACCHAT AGST++PREAAPVASAN VQDWNL++NDRADDRRT KNV
Sbjct: 1  MAPTSKEAT-FSSDACCHATGAGSTSLPREAAPVASANAVQDWNLSSNDRADDRRT-KNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          A+PSLVR V+ IPEPSTNASSKG
Sbjct: 61 AMPSLVRPVDEIPEPSTNASSKG 81

[Close]

BLAST of HG10008708 vs. ExPASy TrEMBL
Match: A0A6J1E1Q7 (Amine oxidase OS=Cucurbita moschata OX=3662 GN=LOC111429999 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAPVASANVVQDWNLTTNDRADDRRTSKNV 60
          MAPTSK+AT FSSDACCHAT AGST++PREAAPVASAN VQDWNL++NDRADDRRT KNV
Sbjct: 1  MAPTSKEAT-FSSDACCHATGAGSTSLPREAAPVASANAVQDWNLSSNDRADDRRT-KNV 60

Query: 61 AIPSLVRSVEPIPEPSTNASSKG 84
          A+PSLVR V+ IPEPSTNASSKG
Sbjct: 61 AMPSLVRPVDEIPEPSTNASSKG 81

[Close]

BLAST of HG10008708 vs. ExPASy TrEMBL
Match: A0A6J1KVW2 (Amine oxidase OS=Cucurbita maxima OX=3661 GN=LOC111497663 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MAPTSKKATFFSSDACCHATAAGSTTVPREAAP-VASANVVQDWNLTTNDRADDRRTSKN 60
          MA  SKKAT FS+DACCHA+ AGST+VPREAAP VASAN VQDWN+ +NDRADDRRT KN
Sbjct: 1  MASASKKAT-FSTDACCHASGAGSTSVPREAAPLVASANAVQDWNVPSNDRADDRRT-KN 60

Query: 61 VAIPSLVRSVEPIPEPSTNASSK 83
          VA+PSL+R V+ IPE STNAS+K
Sbjct: 61 VAMPSLIRPVDAIPESSTNASTK 81

The following BLAST results are available for this feature:

BLAST of HG10008708 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023101.1	2.7e-39	82.35	hypothetical protein SDJN02_14125, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038879175.1	5.0e-33	91.57	copper methylamine oxidase isoform X1 [Benincasa hispida]	[more]
XP_004138093.2	5.0e-33	92.77	uncharacterized protein LOC101204200 isoform X1 [Cucumis sativus]	[more]
XP_008464519.1	4.2e-32	91.57	PREDICTED: copper methylamine oxidase isoform X1 [Cucumis melo]	[more]
XP_022921859.1	3.1e-27	84.34	uncharacterized protein LOC111429999 [Cucurbita moschata]	[more]

BLAST of HG10008708 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRE3	2.4e-33	92.77	Amine oxidase OS=Cucumis sativus OX=3659 GN=Csa_1G004100 PE=3 SV=1	[more]
A0A1S3CM55	2.0e-32	91.57	Amine oxidase OS=Cucumis melo OX=3656 GN=LOC103502378 PE=3 SV=1	[more]
A0A6J1JHS4	1.5e-27	84.34	Amine oxidase OS=Cucurbita maxima OX=3661 GN=LOC111485824 PE=3 SV=1	[more]
A0A6J1E1Q7	1.5e-27	84.34	Amine oxidase OS=Cucurbita moschata OX=3662 GN=LOC111429999 PE=3 SV=1	[more]
A0A6J1KVW2	7.3e-22	75.90	Amine oxidase OS=Cucurbita maxima OX=3661 GN=LOC111497663 PE=3 SV=1	[more]

BLAST of HG10008708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008708.1	HG10008708.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009308	amine metabolic process
molecular_function	GO:0052595	aliphatic-amine oxidase activity
molecular_function	GO:0052594	aminoacetone:oxygen oxidoreductase(deaminating) activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0052596	phenethylamine:oxygen oxidoreductase (deaminating) activity
molecular_function	GO:0008131	primary amine oxidase activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0052593	tryptamine:oxygen oxidoreductase (deaminating) activity