HG10007572 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007572
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein RALF-like 9
Location	Chr10: 7489903 .. 7490157 (+)
RNA-Seq Expression	HG10007572
Synteny	HG10007572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAGGTAATAAATGCAACGGATTACATTGGTTATGACCCAATAAAAGGTGATGTTAGTCCTAGCTATAGTGTAAAGCATCTGAAACTTTGTAAATTAATTCCTGCAAATCCATACCAAAGAGGTTGCAATGCAGCTAATCGTTGTAGGGGAGGAAATGATATTATAGATGGTGTAGAAGAAGTTATTGAAGAAGGGAATGCATCCACTAGCCCAGCAATGAACCCTAATGCAGAATACTACCTTCATTGA

mRNA sequence

ATGATTGAGGTAATAAATGCAACGGATTACATTGGTTATGACCCAATAAAAGGTGATGTTAGTCCTAGCTATAGTGTAAAGCATCTGAAACTTTGTAAATTAATTCCTGCAAATCCATACCAAAGAGGTTGCAATGCAGCTAATCGTTGTAGGGGAGGAAATGATATTATAGATGGTGTAGAAGAAGTTATTGAAGAAGGGAATGCATCCACTAGCCCAGCAATGAACCCTAATGCAGAATACTACCTTCATTGA

Coding sequence (CDS)

ATGATTGAGGTAATAAATGCAACGGATTACATTGGTTATGACCCAATAAAAGGTGATGTTAGTCCTAGCTATAGTGTAAAGCATCTGAAACTTTGTAAATTAATTCCTGCAAATCCATACCAAAGAGGTTGCAATGCAGCTAATCGTTGTAGGGGAGGAAATGATATTATAGATGGTGTAGAAGAAGTTATTGAAGAAGGGAATGCATCCACTAGCCCAGCAATGAACCCTAATGCAGAATACTACCTTCATTGA

Protein sequence

MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDGVEEVIEEGNASTSPAMNPNAEYYLH

Homology

[Close]

BLAST of HG10007572 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDGV 60
          MI++ NAT +I YDP++GDVSP  S  H +LCKL  ANPY+RGC + +RCRGG+DIID  
Sbjct: 21 MIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCTSIDRCRGGSDIIDDA 80

Query: 61 EEVIE 66
          E ++E
Sbjct: 81 EMIVE 85

[Close]

BLAST of HG10007572 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1   MIEVINATDYIGYDPI-KGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDG 60
           MI + NA  +I Y  I  GDVSP  S  H +LC++  ANPYQRGCN  +RCR GNDIID 
Sbjct: 21  MIMITNAKKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIIDA 80

Query: 61  VEEVIEEGNASTSPAMNPNAE 81
            EE I EG+AS SP+++PN E
Sbjct: 81  EEEHI-EGDASISPSISPNIE 100

[Close]

BLAST of HG10007572 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 46/95 (48.42%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1   MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRG--GNDIID 60
           MIE+ NAT YI YDP+K +     S  H  LCK  PANPYQRGCN  +RCRG   +DIID
Sbjct: 19  MIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCNPIDRCRGAESDDIID 78

Query: 61  GVEEVI------------EEGNASTS-PAMNPNAE 81
             EE I            +EG  + S PA++PN E
Sbjct: 79  NDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGE 113

[Close]

BLAST of HG10007572 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRG--GNDIID 60
           MIE+ NAT YI YDP+K +     S  H  LCK IPANPYQRGCN  +RCRG   +DIID
Sbjct: 14  MIEITNATHYINYDPLKKNRDLVCSPTHPDLCKKIPANPYQRGCNPIDRCRGAESDDIID 73

Query: 61  GVEE-----------VI--EEG-NASTSPAMNPNAEY 82
             EE           +I  +EG + ++ PA++PN E+
Sbjct: 74  NDEEDDITNNDEEDDIIDNDEGYDDASCPAISPNGEF 110

[Close]

BLAST of HG10007572 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDGV 60
          MIE+ NA  YI Y  +K DVSP  S KH  LCKL  AN YQRGC+A NRCR  +D ID  
Sbjct: 21 MIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCSAINRCR-RDDYIDSE 80

Query: 61 EEV 64
          E++
Sbjct: 81 EKI 82

[Close]

BLAST of HG10007572 vs. ExPASy Swiss-Prot
Match: Q3ECL0 (Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-06
Identity = 25/50 (50.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 5  INATDYIGYDPI-KGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGG 54
          + AT YI Y  I +GD +      H   CK   ANPYQRGC   NRCRGG
Sbjct: 26 VEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]

BLAST of HG10007572 vs. ExPASy Swiss-Prot
Match: A8MQM2 (Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.4e-05
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 10 YIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCR 52
          YI Y+ +KGD+ P  S K+ K C  IPA  Y RGC  + RC+
Sbjct: 32 YINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEISTRCQ 73

[Close]

BLAST of HG10007572 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.1e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDGV 60
          MI++ NAT +I YDP++GDVSP  S  H +LCKL  ANPY+RGC + +RCRGG+DIID  
Sbjct: 21 MIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCTSIDRCRGGSDIIDDA 80

Query: 61 EEVIE 66
          E ++E
Sbjct: 81 EMIVE 85

[Close]

BLAST of HG10007572 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1   MIEVINATDYIGYDPI-KGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDG 60
           MI + NA  +I Y  I  GDVSP  S  H +LC++  ANPYQRGCN  +RCR GNDIID 
Sbjct: 21  MIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIIDA 80

Query: 61  VEEVIEEGNASTSPAMNPNAE 81
            EE I EG+AS SP+++PN E
Sbjct: 81  EEEHI-EGDASISPSISPNIE 100

[Close]

BLAST of HG10007572 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-12
Identity = 46/95 (48.42%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1   MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRG--GNDIID 60
           MIE+ NAT YI YDP+K +     S  H  LCK  PANPYQRGCN  +RCRG   +DIID
Sbjct: 19  MIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCNPIDRCRGAESDDIID 78

Query: 61  GVEEVI------------EEGNASTS-PAMNPNAE 81
             EE I            +EG  + S PA++PN E
Sbjct: 79  NDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGE 113

[Close]

BLAST of HG10007572 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MIEVINATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDGV 60
          MIE+ NA  YI Y  +K DVSP  S KH  LCKL  AN YQRGC+A NRCR  +D ID  
Sbjct: 21 MIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCSAINRCR-RDDYIDSE 80

Query: 61 EEV 64
          E++
Sbjct: 81 EKI 82

[Close]

BLAST of HG10007572 vs. ExPASy TrEMBL
Match: A0A6J1JNY3 (auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111486187 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 5   INATDYIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGGNDIIDGVEEV 64
           I   ++I YD IK DVSP  S KH  LCK   AN YQRGCNA N+CR G+DII+ VE++
Sbjct: 220 ITTKNFINYDAIKADVSPGCSPKHPNLCKTHEANSYQRGCNAINQCR-GDDIINAVEKI 277

[Close]

BLAST of HG10007572 vs. TAIR 10
Match: AT1G61566.1 (ralf-like 9 )

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-07
Identity = 25/50 (50.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 5  INATDYIGYDPI-KGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCRGG 54
          + AT YI Y  I +GD +      H   CK   ANPYQRGC   NRCRGG
Sbjct: 26 VEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]

BLAST of HG10007572 vs. TAIR 10
Match: AT1G60625.1 (RALF-like 6 )

HSP 1 Score: 47.4 bits (111), Expect = 6.7e-06
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 10 YIGYDPIKGDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCR 52
          YI Y+ +KGD+ P  S K+ K C  IPA  Y RGC  + RC+
Sbjct: 32 YINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEISTRCQ 73

[Close]

BLAST of HG10007572 vs. TAIR 10
Match: AT2G32885.1 (Rapid alkalinization factor (RALF) family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.3e-04
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 0


Query: 32 CKLIPANPYQRGCNAANRCRGG 54
          CK+ PANPY+ GC A+ RCRGG
Sbjct: 51 CKMQPANPYKPGCEASQRCRGG 72

[Close]

BLAST of HG10007572 vs. TAIR 10
Match: AT2G22055.1 (RALF-like 15 )

HSP 1 Score: 40.4 bits (93), Expect = 8.2e-04
Identity = 20/48 (41.67%), Postives = 24/48 (50.00%), Query Frame = 0


Query: 5  INATDYIGYDPIK-GDVSPSYSVKHLKLCKLIPANPYQRGCNAANRCR 52
          + AT YI Y  +  GD +      H   CK   ANPY+RGC    RCR
Sbjct: 26 VEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGTIERCR 73

The following BLAST results are available for this feature:

BLAST of HG10007572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159360.1	1.3e-14	58.46	uncharacterized protein LOC111025777 [Momordica charantia]	[more]
KAE8650705.1	3.7e-14	56.79	hypothetical protein Csa_010421 [Cucumis sativus]	[more]
XP_022961577.1	1.7e-11	48.42	protein RALF-like 9 [Cucurbita moschata]	[more]
XP_023546462.1	1.7e-11	47.42	protein RALF-like 9 [Cucurbita pepo subsp. pepo]	[more]
XP_022136918.1	1.6e-09	57.14	uncharacterized protein LOC111008495 [Momordica charantia]	[more]

BLAST of HG10007572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ECL0	8.5e-06	50.00	Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1	[more]
A8MQM2	9.4e-05	47.62	Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1	[more]

BLAST of HG10007572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYH7	6.1e-15	58.46	uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A0A0L8B1	1.8e-14	56.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1	[more]
A0A6J1HAJ8	8.3e-12	48.42	protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1	[more]
A0A6J1C8U5	7.8e-10	57.14	uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1JNY3	1.3e-09	57.63	auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of HG10007572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61566.1	6.1e-07	50.00	ralf-like 9	[more]
AT1G60625.1	6.7e-06	47.62	RALF-like 6	[more]
AT2G32885.1	6.3e-04	68.18	Rapid alkalinization factor (RALF) family protein	[more]
AT2G22055.1	8.2e-04	41.67	RALF-like 15	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 83..84
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..69
None	No IPR available	PANTHER	PTHR34270:SF10	SUBFAMILY NOT NAMED	coord: 1..69
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 7..52 e-value: 6.4E-7 score: 30.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007572.1	HG10007572.1	mRNA