HG10007337 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007337
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TATA-box-binding protein
Location	Chr10: 3869857 .. 3870601 (+)
RNA-Seq Expression	HG10007337
Synteny	HG10007337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTACAAAGCATCCTTCTGGGATTGTGCCTACCCTCCAGTGAGTTATCACTTTTCCAACCGCTTGTGCCTTCTGATTGTGTATAATAGCTGTTTTTTGCAAGACAAATTATAGTGTTTCATCAGTATTAAGTGGTGGTTATATATATAGTAAATCTCAACGATAAATTGGTATCATGGACGTTTTTAATGATTTACATCCAGAAATTGGGTTGCTCTGGAAGAGATAGTAGTTTAACTTTTCAGCCTATGCTCCATATGAGCCTCTAATATTGACTTGGTGTGATTCTTTCAAACTCTCGAGCTTTGAAATATTCAAGAAAATACACTCAATCTCTTTCTCCTCCCATGTCTCTCTCTCTCTCTCTCTCTCTCTCGTGCACACTCAAAGTAACACAGATATCAAATAAAAAAAAATAAAAAAACAAGGTTGGGTTGGGTTCTCTATTTGCTGTTTCATTCCCATTTTGTGAAGTACAATGTAGGCATCAAATTTCTATTTGTTTTGGCTTTACATGTTTAGATACTCCATGTATGTACTATCTTTTTATTTTTTATTTTTTTATGTTTCTTGATGGACGTACAATGAATTATGTTTCTAGGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTGAAGGCGATTGCTCTTCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

mRNA sequence

ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTACAAAGCATCCTTCTGGGATTGTGCCTACCCTCCAGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTGAAGGCGATTGCTCTTCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

Coding sequence (CDS)

ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTACAAAGCATCCTTCTGGGATTGTGCCTACCCTCCAGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTGAAGGCGATTGCTCTTCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

Protein sequence

MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL

Homology

[Close]

BLAST of HG10007337 vs. NCBI nr
Match: KAG7022001.1 (TATA-box-binding protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 3.1e-23
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL 60
          MADQGLEGAQPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG L
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGVL 60

[Close]

BLAST of HG10007337 vs. NCBI nr
Match: KAA0055733.1 (TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 6.9e-23
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 59
          MADQGLEGAQPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 58

[Close]

BLAST of HG10007337 vs. NCBI nr
Match: KAF7822450.1 (TATA-box-binding protein [Senna tora])

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKAS 58
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKAS
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKAS 57

[Close]

BLAST of HG10007337 vs. NCBI nr
Match: KAF3325145.1 (TATA-box-binding protein [Carex littledalei])

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. NCBI nr
Match: NP_001275090.1 (TATA-box-binding protein [Solanum tuberosum] >XP_004228951.1 TATA-box-binding protein isoform X1 [Solanum lycopersicum] >XP_015062133.1 TATA-box-binding protein [Solanum pennellii] >XP_019234928.1 PREDICTED: TATA-box-binding protein [Nicotiana attenuata] >XP_025885915.1 TATA-box-binding protein isoform X1 [Solanum lycopersicum] >P26357.1 RecName: Full=TATA-box-binding protein; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=TATA-binding factor; AltName: Full=TATA-box factor; AltName: Full=Transcription initiation factor TFIID TBP subunit [Solanum tuberosum] >KAG5631373.1 hypothetical protein H5410_003090 [Solanum commersonii] >CAA44360.1 TATA-binding protein [Solanum tuberosum])

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy Swiss-Prot
Match: P26357 (TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-24
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy Swiss-Prot
Match: P28148 (TATA-box-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TBP2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.5e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy Swiss-Prot
Match: Q42808 (TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-23
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy Swiss-Prot
Match: P28147 (TATA-box-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=TBP1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.5e-23
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy Swiss-Prot
Match: P50159 (TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-23
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MA+ GLEG+QPVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MAEPGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy TrEMBL
Match: A0A5A7UIK5 (TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001180 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 59
          MADQGLEGAQPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 58

[Close]

BLAST of HG10007337 vs. ExPASy TrEMBL
Match: A0A0V0HPN8 (Putative TATA-box-binding protein-like OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy TrEMBL
Match: A0A3Q7EDH7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy TrEMBL
Match: A0A6N2BRF8 (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_004519 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. ExPASy TrEMBL
Match: A0A6A4QAH8 (TATA-box-binding protein OS=Lupinus albus OX=3870 GN=Lalb_Chr07g0190671 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKAS 58
          MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKAS
Sbjct: 1  MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKAS 57

[Close]

BLAST of HG10007337 vs. TAIR 10
Match: AT1G55520.1 (TATA binding protein 2 )

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. TAIR 10
Match: AT1G55520.2 (TATA binding protein 2 )

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. TAIR 10
Match: AT3G13445.1 (TATA binding protein 1 )

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. TAIR 10
Match: AT3G13445.2 (TATA binding protein 1 )

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of HG10007337 vs. TAIR 10
Match: AT3G13440.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 1  MADQGLEGAQPVDLTKHPSGIVPT 25
          MADQGLE + P+DL+KHPSGIVPT
Sbjct: 1  MADQGLEESNPMDLSKHPSGIVPT 24

The following BLAST results are available for this feature:

BLAST of HG10007337 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022001.1	3.1e-23	96.67	TATA-box-binding protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0055733.1	6.9e-23	98.28	TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa]	[more]
KAF7822450.1	1.5e-22	98.25	TATA-box-binding protein [Senna tora]	[more]
KAF3325145.1	1.3e-21	98.18	TATA-box-binding protein [Carex littledalei]	[more]
NP_001275090.1	1.3e-21	98.18	TATA-box-binding protein [Solanum tuberosum] >XP_004228951.1 TATA-box-binding pr...	[more]

BLAST of HG10007337 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26357	1.7e-24	98.18	TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1	[more]
P28148	6.5e-24	96.36	TATA-box-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TBP2 PE=1 SV=1	[more]
Q42808	2.5e-23	94.55	TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1	[more]
P28147	5.5e-23	92.73	TATA-box-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=TBP1 PE=1 SV=1	[more]
P50159	7.2e-23	92.73	TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1	[more]

BLAST of HG10007337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIK5	3.3e-23	98.28	TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A0V0HPN8	6.3e-22	98.18	Putative TATA-box-binding protein-like OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
A0A3Q7EDH7	6.3e-22	98.18	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
A0A6N2BRF8	6.3e-22	98.18	Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_004519 PE=3 SV=1	[more]
A0A6A4QAH8	1.1e-21	94.74	TATA-box-binding protein OS=Lupinus albus OX=3870 GN=Lalb_Chr07g0190671 PE=3 SV=...	[more]

BLAST of HG10007337 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55520.1	4.6e-25	96.36	TATA binding protein 2	[more]
AT1G55520.2	4.6e-25	96.36	TATA binding protein 2	[more]
AT3G13445.1	3.9e-24	92.73	TATA binding protein 1	[more]
AT3G13445.2	3.9e-24	92.73	TATA binding protein 1	[more]
AT3G13440.1	3.1e-05	79.17	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000814	TATA-box binding protein	PRINTS	PR00686	TIFACTORIID	coord: 25..40 score: 78.59 coord: 49..60 score: 32.13
IPR000814	TATA-box binding protein	PFAM	PF00352	TBP	coord: 24..56 e-value: 1.3E-8 score: 34.7
IPR000814	TATA-box binding protein	PANTHER	PTHR10126	TATA-BOX BINDING PROTEIN	coord: 1..55
IPR012295	TBP domain superfamily	GENE3D	3.30.310.10		coord: 11..59 e-value: 1.3E-13 score: 52.4
None	No IPR available	PANTHER	PTHR10126:SF48	TATA-BOX-BINDING PROTEIN 1	coord: 1..55
None	No IPR available	SUPERFAMILY	55945	TATA-box binding protein-like	coord: 20..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007337.1	HG10007337.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006413	translational initiation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity