HG10006975 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTATTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTATTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTATTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA MRVKLKLIGDRYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL Homology
BLAST of HG10006975 vs. NCBI nr
Match: XP_008460559.1 (PREDICTED: methyl-CpG-binding domain protein 4-like protein [Cucumis melo]) HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of HG10006975 vs. NCBI nr
Match: XP_004142362.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucumis sativus] >KAE8648887.1 hypothetical protein Csa_007768 [Cucumis sativus]) HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of HG10006975 vs. NCBI nr
Match: XP_038892490.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Benincasa hispida]) HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13 Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of HG10006975 vs. NCBI nr
Match: XP_022969557.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima]) HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0
BLAST of HG10006975 vs. NCBI nr
Match: XP_023529473.1 (methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy Swiss-Prot
Match: Q0IGK1 (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702 GN=MBD4L PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-07 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy Swiss-Prot
Match: O95243 (Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 3.6e-04 Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy Swiss-Prot
Match: Q9Z2D7 (Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 3.6e-04 Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A1S3CCU6 (methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC103499353 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A6J1HWM5 (methyl-CpG-binding domain protein 4-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468538 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A6J1EZJ4 (methyl-CpG-binding domain protein 4-like protein OS=Cucurbita moschata OX=3662 GN=LOC111437878 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A6J1DRX8 (methyl-CpG-binding domain protein 4-like protein OS=Momordica charantia OX=3673 GN=LOC111023823 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A2Z6P5J2 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_135190 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08 Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
BLAST of HG10006975 vs. TAIR 10
Match: AT3G07930.3 (DNA glycosylase superfamily protein ) HSP 1 Score: 55.5 bits (132), Expect = 1.4e-08 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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