HG10006975 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006975
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	methyl-CpG-binding domain protein 4-like protein
Location	Chr07: 23844182 .. 23844331 (-)
RNA-Seq Expression	HG10006975
Synteny	HG10006975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTATTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA

mRNA sequence

ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTATTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA

Coding sequence (CDS)

ATGCGTGTTAAGCTAAAATTGATTGGAGACAGGTATGGAGCTGATGCACATGCAATATTCTGCACTGGATATTGGAATGAAGTAGAACCTAAAGATCACATGCTTAATTATTACTCGGATTTTCTCCACAGCATCAAACACCTGCTCTGA

Protein sequence

MRVKLKLIGDRYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL

Homology

[Close]

BLAST of HG10006975 vs. NCBI nr
Match: XP_008460559.1 (PREDICTED: methyl-CpG-binding domain protein 4-like protein [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW+EVEPKDHMLNYY DFLHSIKHLL
Sbjct: 450 KYGADAHAIFCTGYWSEVEPKDHMLNYYWDFLHSIKHLL 488

[Close]

BLAST of HG10006975 vs. NCBI nr
Match: XP_004142362.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucumis sativus] >KAE8648887.1 hypothetical protein Csa_007768 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW+EVEPKDHMLNYY DFLHSIKHLL
Sbjct: 450 KYGADAHAIFCTGYWSEVEPKDHMLNYYWDFLHSIKHLL 488

[Close]

BLAST of HG10006975 vs. NCBI nr
Match: XP_038892490.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYWNEV+PKDHMLNYY +FLHSI+HLL
Sbjct: 433 KYGADAHAIFCTGYWNEVDPKDHMLNYYWEFLHSIRHLL 471

[Close]

BLAST of HG10006975 vs. NCBI nr
Match: XP_022969557.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Sbjct: 437 KYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 475

[Close]

BLAST of HG10006975 vs. NCBI nr
Match: XP_023529473.1 (methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Sbjct: 495 KYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 533

[Close]

BLAST of HG10006975 vs. ExPASy Swiss-Prot
Match: Q0IGK1 (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702 GN=MBD4L PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL 43
           +Y ADA+AIFC G W+ V+P DHMLNYY D+L
Sbjct: 408 KYAADAYAIFCNGNWDRVKPNDHMLNYYWDYL 439

[Close]

BLAST of HG10006975 vs. ExPASy Swiss-Prot
Match: O95243 (Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-04
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL 43
           +YG D++ IFC   W +V P+DH LN Y D+L
Sbjct: 539 KYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 570

[Close]

BLAST of HG10006975 vs. ExPASy Swiss-Prot
Match: Q9Z2D7 (Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-04
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL 43
           +YG D++ IFC   W +V P+DH LN Y D+L
Sbjct: 513 KYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 544

[Close]

BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A1S3CCU6 (methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC103499353 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW+EVEPKDHMLNYY DFLHSIKHLL
Sbjct: 450 KYGADAHAIFCTGYWSEVEPKDHMLNYYWDFLHSIKHLL 488

[Close]

BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A6J1HWM5 (methyl-CpG-binding domain protein 4-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468538 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Sbjct: 437 KYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 475

[Close]

BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A6J1EZJ4 (methyl-CpG-binding domain protein 4-like protein OS=Cucurbita moschata OX=3662 GN=LOC111437878 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW EV PKDHMLNYY +FLHSIKHLL
Sbjct: 504 KYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 542

[Close]

BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A6J1DRX8 (methyl-CpG-binding domain protein 4-like protein OS=Momordica charantia OX=3673 GN=LOC111023823 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
           +YGADAHAIFCTGYW++V PKDHMLNYY +FL SIK  L
Sbjct: 413 KYGADAHAIFCTGYWDQVLPKDHMLNYYWEFLQSIKEHL 451

[Close]

BLAST of HG10006975 vs. ExPASy TrEMBL
Match: A0A2Z6P5J2 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_135190 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 11 RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFLHSIKHLL 50
          +Y ADA+AIFCTG W+EVEP DHMLN Y DFL SIKH+L
Sbjct: 25 QYAADAYAIFCTGKWDEVEPDDHMLNKYWDFLRSIKHML 63

[Close]

BLAST of HG10006975 vs. TAIR 10
Match: AT3G07930.3 (DNA glycosylase superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-08
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 11  RYGADAHAIFCTGYWNEVEPKDHMLNYYSDFL 43
           +Y ADA+AIFC G W+ V+P DHMLNYY D+L
Sbjct: 408 KYAADAYAIFCNGNWDRVKPNDHMLNYYWDYL 439

The following BLAST results are available for this feature:

BLAST of HG10006975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460559.1	1.1e-13	92.31	PREDICTED: methyl-CpG-binding domain protein 4-like protein [Cucumis melo]	[more]
XP_004142362.1	1.1e-13	92.31	methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucumis sativus] >K...	[more]
XP_038892490.1	4.1e-13	87.18	methyl-CpG-binding domain protein 4-like protein isoform X1 [Benincasa hispida]	[more]
XP_022969557.1	3.4e-12	87.18	methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima]	[more]
XP_023529473.1	3.4e-12	87.18	methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10006975 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0IGK1	2.0e-07	65.63	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702...	[more]
O95243	3.6e-04	50.00	Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1	[more]
Q9Z2D7	3.6e-04	50.00	Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1	[more]

BLAST of HG10006975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CCU6	5.2e-14	92.31	methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1HWM5	1.7e-12	87.18	methyl-CpG-binding domain protein 4-like protein isoform X1 OS=Cucurbita maxima ...	[more]
A0A6J1EZJ4	1.7e-12	87.18	methyl-CpG-binding domain protein 4-like protein OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1DRX8	1.3e-09	76.92	methyl-CpG-binding domain protein 4-like protein OS=Momordica charantia OX=3673 ...	[more]
A0A2Z6P5J2	1.5e-08	74.36	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_135190 PE=4 SV...	[more]

BLAST of HG10006975 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07930.3	1.4e-08	65.63	DNA glycosylase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.30	Hypothetical protein; domain 2	coord: 2..49 e-value: 6.5E-8 score: 34.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006975.1	HG10006975.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding