HG10006479 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAAGCAAAGTATCTCAAAAGAGGAGCATATCGAAAAGGGAGAAGAGACTTTCTACTAGCCATAAACACAATTCTAAGTCTAAAAGTAGCATCAAAGAAGGGAAGATCATGGAGAAGGCTGGTTCTTCAGATAAGAGCACAAAGAATCAGAAAAAGAAAGAAAATGATAGAGAGAAAAAGAGTCGAAGAGAAGATATAATAAGTAAAGAAAACCTTGGTGGACTGATTTTCATGTGTAGTGCGAAAACGAAGCTAGATTGTTTTCACTATAACGTAATGAGTGTTTCTGCTGGCAAAAAGGATGTAGTCTTGGCAATCAAACCTGGGTTGAAACTCTTTCTCTACGATTTTGATCTCAGGCTTCTGTATGGGATTTATAAAGTATCCTCTTCCGGTGGCATGAAACTTGAGCCAAAGGCTTTTGTGGGGCTTTTCTTGCTCAGGTTCAAGTTTTGTTAGTTATTATAAACTACTCTAGAAGCTATTTTTTCATCTGCCAAGGATATCGTCTCAATTTCAAAATTGAAATTTCAGGTATAGTACAATATTACAAGGATTGTATCCACAACCTAAAAGTATTTTCAAGAAGGCTATCCAAGAAAGCTATCATGAGAAGCACAACTTTAAAGCTAAACTCATAGTTAAATAGGTGGATGTGTCAAGTTTCTTCTGCTAGCTTGGCTTTTCAATAGCTTTTTTAATTATTATTTTTTTCCTATGATGACATTCTAGGATTTCATTTTTCAAATTAGGAAGCTCTCATATTTTTTCCGACCAGTTGGACTCCACTTGATTTTTGCTCTTTTTCGGTCCCATAGGGAGGTACCAATTAGGGATAGAAATGCTCATAGGCAAGTTAAAGACATTCGGTTAGGAACTCTAAGTCCAAGGGTGATTCCAGGATATACCATATGTCATCTCATGGAAGGGATCGACATCGAGAAGAGGCACCTAGACATGTAA ATGTTAAGCAAAGTATCTCAAAAGAGGAGCATATCGAAAAGGGAGAAGAGACTTTCTACTAGCCATAAACACAATTCTAAGTCTAAAAGTAGCATCAAAGAAGGGAAGATCATGGAGAAGGCTGGTTCTTCAGATAAGAGCACAAAGAATCAGAAAAAGAAAGAAAATGATAGAGAGAAAAAGAGTCGAAGAGAAGATATAATAAGTAAAGAAAACCTTGGTGGACTGATTTTCATGTGTAGTGCGAAAACGAAGCTAGATTGTTTTCACTATAACGTAATGAGTGTTTCTGCTGGCAAAAAGGATGTAGTCTTGGCAATCAAACCTGGGTTGAAACTCTTTCTCTACGATTTTGATCTCAGGCTTCTGTATGGGATTTATAAAGTATCCTCTTCCGGTGGCATGAAACTTGAGCCAAAGGCTTTTGTGGGGCTTTTCTTGCTCAGGGAGGTACCAATTAGGGATAGAAATGCTCATAGGCAAGTTAAAGACATTCGGTTAGGAACTCTAAGTCCAAGGGTGATTCCAGGATATACCATATGTCATCTCATGGAAGGGATCGACATCGAGAAGAGGCACCTAGACATGTAA ATGTTAAGCAAAGTATCTCAAAAGAGGAGCATATCGAAAAGGGAGAAGAGACTTTCTACTAGCCATAAACACAATTCTAAGTCTAAAAGTAGCATCAAAGAAGGGAAGATCATGGAGAAGGCTGGTTCTTCAGATAAGAGCACAAAGAATCAGAAAAAGAAAGAAAATGATAGAGAGAAAAAGAGTCGAAGAGAAGATATAATAAGTAAAGAAAACCTTGGTGGACTGATTTTCATGTGTAGTGCGAAAACGAAGCTAGATTGTTTTCACTATAACGTAATGAGTGTTTCTGCTGGCAAAAAGGATGTAGTCTTGGCAATCAAACCTGGGTTGAAACTCTTTCTCTACGATTTTGATCTCAGGCTTCTGTATGGGATTTATAAAGTATCCTCTTCCGGTGGCATGAAACTTGAGCCAAAGGCTTTTGTGGGGCTTTTCTTGCTCAGGGAGGTACCAATTAGGGATAGAAATGCTCATAGGCAAGTTAAAGACATTCGGTTAGGAACTCTAAGTCCAAGGGTGATTCCAGGATATACCATATGTCATCTCATGGAAGGGATCGACATCGAGAAGAGGCACCTAGACATGTAA MLSKVSQKRSISKREKRLSTSHKHNSKSKSSIKEGKIMEKAGSSDKSTKNQKKKENDREKKSRREDIISKENLGGLIFMCSAKTKLDCFHYNVMSVSAGKKDVVLAIKPGLKLFLYDFDLRLLYGIYKVSSSGGMKLEPKAFVGLFLLREVPIRDRNAHRQVKDIRLGTLSPRVIPGYTICHLMEGIDIEKRHLDM Homology
BLAST of HG10006479 vs. NCBI nr
Match: XP_038890152.1 (uncharacterized protein LOC120079814 [Benincasa hispida] >XP_038890153.1 uncharacterized protein LOC120079814 [Benincasa hispida] >XP_038890154.1 uncharacterized protein LOC120079814 [Benincasa hispida]) HSP 1 Score: 198.7 bits (504), Expect = 4.5e-47 Identity = 117/148 (79.05%), Postives = 125/148 (84.46%), Query Frame = 0
BLAST of HG10006479 vs. NCBI nr
Match: KAA0063648.1 (uncharacterized protein E6C27_scaffold329G001620 [Cucumis melo var. makuwa] >TYK18377.1 uncharacterized protein E5676_scaffold456G001000 [Cucumis melo var. makuwa]) HSP 1 Score: 193.0 bits (489), Expect = 2.5e-45 Identity = 111/148 (75.00%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of HG10006479 vs. NCBI nr
Match: XP_031736679.1 (uncharacterized protein LOC116402060 [Cucumis sativus]) HSP 1 Score: 192.2 bits (487), Expect = 4.2e-45 Identity = 110/148 (74.32%), Postives = 123/148 (83.11%), Query Frame = 0
BLAST of HG10006479 vs. NCBI nr
Match: KAE8651574.1 (hypothetical protein Csa_023448 [Cucumis sativus]) HSP 1 Score: 192.2 bits (487), Expect = 4.2e-45 Identity = 110/148 (74.32%), Postives = 123/148 (83.11%), Query Frame = 0
BLAST of HG10006479 vs. NCBI nr
Match: XP_022999112.1 (uncharacterized protein LOC111493592 [Cucurbita maxima]) HSP 1 Score: 186.4 bits (472), Expect = 2.3e-43 Identity = 108/154 (70.13%), Postives = 124/154 (80.52%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy Swiss-Prot
Match: P37707 (B2 protein OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07 Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy Swiss-Prot
Match: C6TAQ0 (DCD domain-containing protein NRP-B OS=Glycine max OX=3847 GN=NRP-B PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.7e-07 Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy Swiss-Prot
Match: Q8RXN8 (DCD domain-containing protein NRP OS=Arabidopsis thaliana OX=3702 GN=NRP PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.7e-07 Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy Swiss-Prot
Match: Q5JZR1 (DCD domain-containing protein NRP-A OS=Glycine max OX=3847 GN=NRP-A PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04 Identity = 35/125 (28.00%), Postives = 58/125 (46.40%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy TrEMBL
Match: A0A5A7V7U7 (DCD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001000 PE=4 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45 Identity = 111/148 (75.00%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy TrEMBL
Match: A0A6J1K9Y2 (uncharacterized protein LOC111493592 OS=Cucurbita maxima OX=3661 GN=LOC111493592 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43 Identity = 108/154 (70.13%), Postives = 124/154 (80.52%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy TrEMBL
Match: A0A6J1G3C2 (uncharacterized protein LOC111450407 OS=Cucurbita moschata OX=3662 GN=LOC111450407 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 5.6e-43 Identity = 107/148 (72.30%), Postives = 118/148 (79.73%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy TrEMBL
Match: A0A6J1D9F1 (uncharacterized protein LOC111018835 OS=Momordica charantia OX=3673 GN=LOC111018835 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 4.0e-41 Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 0
BLAST of HG10006479 vs. ExPASy TrEMBL
Match: A0A6J1FI13 (uncharacterized protein LOC111444319 OS=Cucurbita moschata OX=3662 GN=LOC111444319 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39 Identity = 102/148 (68.92%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of HG10006479 vs. TAIR 10
Match: AT2G32910.1 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21 Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 0
BLAST of HG10006479 vs. TAIR 10
Match: AT5G61910.1 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0
BLAST of HG10006479 vs. TAIR 10
Match: AT5G61910.2 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0
BLAST of HG10006479 vs. TAIR 10
Match: AT5G61910.3 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0
BLAST of HG10006479 vs. TAIR 10
Match: AT5G61910.4 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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